RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 DCP1AQ9NPI6 582 aaPredicted RBP16.1■□□□□ 0.17
VPS28-201ENST00000292510 PI4KBQ9UBF8 816 aa16.1■□□□□ 0.17
VPS28-201ENST00000292510 SIPA1L1O43166 1804 aa16.1■□□□□ 0.17
VPS28-201ENST00000292510 HLA-DOAP06340 250 aa16.09■□□□□ 0.17
VPS28-201ENST00000292510 RILPL2Q969X0 211 aa16.09■□□□□ 0.17
VPS28-201ENST00000292510 OTUD5Q96G74 571 aa16.09■□□□□ 0.17
VPS28-201ENST00000292510 DNAJC18Q9H819 358 aa16.09■□□□□ 0.17
VPS28-201ENST00000292510 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.09■□□□□ 0.17
VPS28-201ENST00000292510 SLC4A4Q9Y6R1 1079 aa16.09■□□□□ 0.17
VPS28-201ENST00000292510 SPDYE5A6NIY4 337 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 FOXN1O15353 648 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 GPAA1O43292 621 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 POLR3DP05423 398 aaPredicted RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 ZBTB48P10074 688 aaPredicted RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 CYP2D6P10635 497 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 PLCD1P51178 756 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 LRRFIP1Q32MZ4 808 aaKnown RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 ZMYM1Q5SVZ6 1142 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 NOL9Q5SY16 702 aaKnown RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 SKAP1Q86WV1 359 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 ERO1BQ86YB8 467 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 CRACR2BQ8N4Y2 399 aaPredicted RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 STRBPQ96SI9 672 aaKnown RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 MCM9Q9NXL9 1143 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 HERC5Q9UII4 1024 aaKnown RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 TSKSQ9UJT2 592 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 DDX60LQ5H9U9 1706 aaKnown RBP16.08■□□□□ 0.16
VPS28-201ENST00000292510 NAV1Q8NEY1 1877 aa16.08■□□□□ 0.16
VPS28-201ENST00000292510 MYH1P12882 1939 aa16.07■□□□□ 0.16
VPS28-201ENST00000292510 CCDC84Q86UT8 332 aaPredicted RBP16.07■□□□□ 0.16
VPS28-201ENST00000292510 FOXP4Q8IVH2 680 aaPredicted RBP16.07■□□□□ 0.16
VPS28-201ENST00000292510 SCYL3Q8IZE3 742 aa16.07■□□□□ 0.16
VPS28-201ENST00000292510 CYP2D7A0A087X1C5 515 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 SMIM22K7EJ46 135 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 IRF6O14896 467 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 CTNND1O60716 968 aaKnown RBP16.06■□□□□ 0.16
VPS28-201ENST00000292510 SHROOM1Q2M3G4 852 aaPredicted RBP16.06■□□□□ 0.16
VPS28-201ENST00000292510 CCDC129Q6ZRS4 1044 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 CENPQQ7L2Z9 268 aaPredicted RBP16.06■□□□□ 0.16
VPS28-201ENST00000292510 TTC6Q86TZ1 520 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 METTL16Q86W50 562 aaKnown RBP16.06■□□□□ 0.16
VPS28-201ENST00000292510 CCDC136Q96JN2 1154 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 FAM227BQ96M60 508 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 BEGAINQ9BUH8 593 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 TRIM34Q9BYJ4 488 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 ATP8A2Q9NTI2 1148 aa16.06■□□□□ 0.16
VPS28-201ENST00000292510 A0A0D9SFI3 127 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 GSG1L2A8MUP6 293 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 GSPT1P15170 499 aaKnown RBP16.05■□□□□ 0.16
VPS28-201ENST00000292510 TM4SF4P48230 202 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 JAG1P78504 1218 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 PPATQ06203 517 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 PPIL2Q13356 520 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 TTC22Q5TAA0 569 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 MS4A4AQ96JQ5 239 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 PICK1Q9NRD5 415 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 RNF186Q9NXI6 227 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 SERPINB13Q9UIV8 391 aa16.05■□□□□ 0.16
VPS28-201ENST00000292510 MANSC4A6NHS7 340 aaPredicted RBP16.04■□□□□ 0.16
VPS28-201ENST00000292510 USP17L12C9JPN9 530 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 USP17L21D6R901 530 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 TRPA1O75762 1119 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 GDF11O95390 407 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 PTPRAP18433 802 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 CAP2P40123 477 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 SREBF2Q12772 1141 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 NMIQ13287 307 aaPredicted RBP16.04■□□□□ 0.16
VPS28-201ENST00000292510 DYNLL2Q96FJ2 89 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 PTPN18Q99952 460 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 EHD4Q9H223 541 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 EPB41L4AQ9HCS5 686 aaPredicted RBP16.04■□□□□ 0.16
VPS28-201ENST00000292510 ZHX2Q9Y6X8 837 aa16.04■□□□□ 0.16
VPS28-201ENST00000292510 BAZ2AQ9UIF9 1905 aaKnown RBP16.04■□□□□ 0.16
VPS28-201ENST00000292510 IGF2BP3O00425 579 aaKnown RBP eCLIP16.03■□□□□ 0.16
VPS28-201ENST00000292510 HSPA8P11142 646 aaKnown RBP16.03■□□□□ 0.16
VPS28-201ENST00000292510 SDSP20132 328 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 GTF2A2P52657 109 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 GABPAQ06546 454 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 CTR9Q6PD62 1173 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 REM2Q8IYK8 340 aaPredicted RBP16.03■□□□□ 0.16
VPS28-201ENST00000292510 SLC44A5Q8NCS7 719 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 BRI3BPQ8WY22 251 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 DDRGK1Q96HY6 314 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 DOCK1Q14185 1865 aa16.03■□□□□ 0.16
VPS28-201ENST00000292510 CCL15-CCL14A0A0B4J2E2 113 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 APPP05067 770 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 SHMT1P34896 483 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 LBX1P52954 281 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 CCL15Q16663 113 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 C12orf60Q5U649 245 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 TATDN1Q6P1N9 297 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 IFNL1Q8IU54 200 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 HELLSQ9NRZ9 838 aa16.02■□□□□ 0.16
VPS28-201ENST00000292510 TESPA1A2RU30 521 aaPredicted RBP16.01■□□□□ 0.15
VPS28-201ENST00000292510 PATL2C9JE40 543 aaKnown RBP16.01■□□□□ 0.15
VPS28-201ENST00000292510 FOXP2O15409 715 aa16.01■□□□□ 0.15
VPS28-201ENST00000292510 GNAT2P19087 354 aa16.01■□□□□ 0.15
VPS28-201ENST00000292510 TDO2P48775 406 aa16.01■□□□□ 0.15
VPS28-201ENST00000292510 CTCFP49711 727 aaPredicted RBP16.01■□□□□ 0.15
VPS28-201ENST00000292510 SNAPC2Q13487 334 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms