RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 ANK2Q01484 3957 aa2.79□□□□□ -1.96
TPM1-222ENST00000560131 TENM1Q9UKZ4 2725 aa2.78□□□□□ -1.96
TPM1-222ENST00000560131 KRTAP13-2Q52LG2 175 aa2.78□□□□□ -1.96
TPM1-222ENST00000560131 DNAH17Q9UFH2 4485 aa2.78□□□□□ -1.97
TPM1-222ENST00000560131 DNAH9Q9NYC9 4486 aa2.77□□□□□ -1.97
TPM1-222ENST00000560131 SRRM2Q9UQ35 2752 aaKnown RBP2.77□□□□□ -1.97
TPM1-222ENST00000560131 SPINK1P00995 79 aa2.77□□□□□ -1.97
TPM1-222ENST00000560131 HELZ2Q9BYK8 2649 aaKnown RBP2.77□□□□□ -1.97
TPM1-222ENST00000560131 LCE3CQ5T5A8 94 aa2.76□□□□□ -1.97
TPM1-222ENST00000560131 MAST4O15021 2626 aa2.76□□□□□ -1.97
TPM1-222ENST00000560131 VPS13DQ5THJ4 4388 aa2.75□□□□□ -1.97
TPM1-222ENST00000560131 CMYA5Q8N3K9 4069 aa2.75□□□□□ -1.97
TPM1-222ENST00000560131 A0A1B0GVY2 172 aa2.75□□□□□ -1.97
TPM1-222ENST00000560131 C20orf166-AS1Q96NR2 134 aa2.75□□□□□ -1.97
TPM1-222ENST00000560131 TRRAPQ9Y4A5 3859 aa2.75□□□□□ -1.97
TPM1-222ENST00000560131 RPL37P61927 97 aaKnown RBP2.74□□□□□ -1.97
TPM1-222ENST00000560131 LYSTQ99698 3801 aa2.74□□□□□ -1.97
TPM1-222ENST00000560131 FLNBO75369 2602 aaKnown RBP2.74□□□□□ -1.97
TPM1-222ENST00000560131 ITPR2Q14571 2701 aa2.73□□□□□ -1.97
TPM1-222ENST00000560131 FASNP49327 2511 aaKnown RBP2.73□□□□□ -1.97
TPM1-222ENST00000560131 PRKDCP78527 4128 aaKnown RBP2.7□□□□□ -1.98
TPM1-222ENST00000560131 TPRXLQ17RH7 258 aa2.7□□□□□ -1.98
TPM1-222ENST00000560131 SPINT4Q6UDR6 99 aa2.69□□□□□ -1.98
TPM1-222ENST00000560131 FBN1P35555 2871 aaKnown RBP2.68□□□□□ -1.98
TPM1-222ENST00000560131 DNAH7Q8WXX0 4024 aa2.67□□□□□ -1.98
TPM1-222ENST00000560131 HECTD4Q9Y4D8 3996 aa2.67□□□□□ -1.98
TPM1-222ENST00000560131 PLECQ15149 4684 aaKnown RBP2.66□□□□□ -1.98
TPM1-222ENST00000560131 SACSQ9NZJ4 4579 aa2.66□□□□□ -1.98
TPM1-222ENST00000560131 CRIPTQ9P021 101 aa2.66□□□□□ -1.98
TPM1-222ENST00000560131 DNAH2Q9P225 4427 aa2.66□□□□□ -1.98
TPM1-222ENST00000560131 STAB2Q8WWQ8 2551 aa2.66□□□□□ -1.98
TPM1-222ENST00000560131 NBEAL1Q6ZS30 2694 aa2.65□□□□□ -1.98
TPM1-222ENST00000560131 DNAH11Q96DT5 4516 aa2.65□□□□□ -1.98
TPM1-222ENST00000560131 NOTCH1P46531 2555 aa2.65□□□□□ -1.99
TPM1-222ENST00000560131 DNAH6Q9C0G6 4158 aa2.65□□□□□ -1.99
TPM1-222ENST00000560131 FRAS1Q86XX4 4008 aa2.63□□□□□ -1.99
TPM1-222ENST00000560131 LCE3AQ5TA76 89 aa2.63□□□□□ -1.99
TPM1-222ENST00000560131 MEGF8Q7Z7M0 2845 aa2.63□□□□□ -1.99
TPM1-222ENST00000560131 TGP01266 2768 aa2.62□□□□□ -1.99
TPM1-222ENST00000560131 KRTAP13-4Q3LI77 160 aa2.62□□□□□ -1.99
TPM1-222ENST00000560131 FLG2Q5D862 2391 aaPredicted RBP2.61□□□□□ -1.99
TPM1-222ENST00000560131 STAB1Q9NY15 2570 aa2.61□□□□□ -1.99
TPM1-222ENST00000560131 S4R3F8 94 aa2.61□□□□□ -1.99
TPM1-222ENST00000560131 COL6A5A8TX70 2615 aa2.61□□□□□ -1.99
TPM1-222ENST00000560131 CSMD3Q7Z407 3707 aa2.6□□□□□ -1.99
TPM1-222ENST00000560131 DNAH5Q8TE73 4624 aa2.6□□□□□ -1.99
TPM1-222ENST00000560131 KRTAP10-1P60331 282 aa2.59□□□□□ -1.99
TPM1-222ENST00000560131 M0QZ58 72 aa2.58□□□□□ -2
TPM1-222ENST00000560131 C10orf95Q9H7T3 257 aa2.58□□□□□ -2
TPM1-222ENST00000560131 MGAM2Q2M2H8 2515 aa2.57□□□□□ -2
TPM1-222ENST00000560131 KRTAP12-1P59990 96 aa2.57□□□□□ -2
TPM1-222ENST00000560131 KRTAP12-2P59991 146 aa2.56□□□□□ -2
TPM1-222ENST00000560131 PKHD1L1Q86WI1 4243 aa2.56□□□□□ -2
TPM1-222ENST00000560131 COL7A1Q02388 2944 aa2.56□□□□□ -2
TPM1-222ENST00000560131 A0A0D9SG42 100 aa2.55□□□□□ -2
TPM1-222ENST00000560131 C9orf92A6NGG3 77 aa2.55□□□□□ -2
TPM1-222ENST00000560131 KRTAP5-8O75690 187 aa2.55□□□□□ -2
TPM1-222ENST00000560131 STARD9Q9P2P6 4700 aa2.54□□□□□ -2
TPM1-222ENST00000560131 LRP1BQ9NZR2 4599 aa2.54□□□□□ -2
TPM1-222ENST00000560131 FBN3Q75N90 2809 aa2.52□□□□□ -2.01
TPM1-222ENST00000560131 LCE3EQ5T5B0 92 aa2.51□□□□□ -2.01
TPM1-222ENST00000560131 R4GN34 69 aa2.51□□□□□ -2.01
TPM1-222ENST00000560131 KRTAP10-8P60410 259 aa2.5□□□□□ -2.01
TPM1-222ENST00000560131 PLAC4Q8WY50 150 aa2.5□□□□□ -2.01
TPM1-222ENST00000560131 KRTAP10-4P60372 401 aaPredicted RBP2.49□□□□□ -2.01
TPM1-222ENST00000560131 PP632Q6XCG6 107 aa2.49□□□□□ -2.01
TPM1-222ENST00000560131 PKD1P98161 4303 aa2.49□□□□□ -2.01
TPM1-222ENST00000560131 KMT2AQ03164 3969 aa2.48□□□□□ -2.01
TPM1-222ENST00000560131 APOBP04114 4563 aaKnown RBP2.47□□□□□ -2.01
TPM1-222ENST00000560131 VPS13BQ7Z7G8 4022 aa2.47□□□□□ -2.01
TPM1-222ENST00000560131 FAT2Q9NYQ8 4349 aa2.46□□□□□ -2.02
TPM1-222ENST00000560131 PKHD1P08F94 4074 aa2.45□□□□□ -2.02
TPM1-222ENST00000560131 LRP1Q07954 4544 aaKnown RBP2.45□□□□□ -2.02
TPM1-222ENST00000560131 DMBT1Q9UGM3 2413 aaPredicted RBP2.43□□□□□ -2.02
TPM1-222ENST00000560131 SPRR5A0A1B0GTR4 108 aa2.42□□□□□ -2.02
TPM1-222ENST00000560131 TNXBP22105 4242 aa2.42□□□□□ -2.02
TPM1-222ENST00000560131 FAT3Q8TDW7 4589 aa2.41□□□□□ -2.02
TPM1-222ENST00000560131 DYNC1H1Q14204 4646 aaKnown RBP2.4□□□□□ -2.03
TPM1-222ENST00000560131 KRTAP5-5Q701N2 237 aaPredicted RBP2.4□□□□□ -2.03
TPM1-222ENST00000560131 HSPG2P98160 4391 aa2.4□□□□□ -2.03
TPM1-222ENST00000560131 FAT1Q14517 4588 aa2.39□□□□□ -2.03
TPM1-222ENST00000560131 SMR3BP02814 79 aaPredicted RBP2.35□□□□□ -2.03
TPM1-222ENST00000560131 LCE1CQ5T751 118 aa2.35□□□□□ -2.03
TPM1-222ENST00000560131 LCE1BQ5T7P3 118 aa2.35□□□□□ -2.03
TPM1-222ENST00000560131 MYCBP2O75592 4640 aa2.34□□□□□ -2.03
TPM1-222ENST00000560131 PRO2289Q9P1D8 64 aa2.32□□□□□ -2.04
TPM1-222ENST00000560131 HYDINQ4G0P3 5121 aa2.31□□□□□ -2.04
TPM1-222ENST00000560131 INE1O15225 51 aa2.29□□□□□ -2.04
TPM1-222ENST00000560131 DNHD1Q96M86 4753 aa2.27□□□□□ -2.05
TPM1-222ENST00000560131 TNP1P09430 55 aa2.26□□□□□ -2.05
TPM1-222ENST00000560131 MT1HL1P0DM35 61 aa2.25□□□□□ -2.05
TPM1-222ENST00000560131 Q5VSD8 79 aa2.25□□□□□ -2.05
TPM1-222ENST00000560131 KRTAP10-10P60014 251 aa2.19□□□□□ -2.06
TPM1-222ENST00000560131 KRTAP21-3Q3LHN1 58 aa2.18□□□□□ -2.06
TPM1-222ENST00000560131 KRTAP19-2Q3LHN2 52 aa2.18□□□□□ -2.06
TPM1-222ENST00000560131 LCE3DQ9BYE3 92 aa2.18□□□□□ -2.06
TPM1-222ENST00000560131 RYR2Q92736 4967 aa2.17□□□□□ -2.06
TPM1-222ENST00000560131 HERC1Q15751 4861 aa2.16□□□□□ -2.06
TPM1-222ENST00000560131 FLGP20930 4061 aaPredicted RBP2.14□□□□□ -2.07
TPM1-222ENST00000560131 RYR1P21817 5038 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms