RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ENHOQ6UWT2 76 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 COX6B2Q6YFQ2 88 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 SMCO4Q9NRQ5 59 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 FLGP20930 4061 aaPredicted RBP-0.02□□□□□ -2.41
USP3-209ENST00000558925 ADCY10Q96PN6 1610 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 LMTK2Q8IWU2 1503 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 DNAH3Q8TD57 4116 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 RPL38P63173 70 aaKnown RBP-0.02□□□□□ -2.41
USP3-209ENST00000558925 MT1HP80294 61 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 KRTAP6-2Q3LI66 62 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 SMIM5Q71RC9 77 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 DEFB124Q8NES8 71 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 KCNQ1DNQ9H478 68 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 DNAH6Q9C0G6 4158 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 NRXN3Q9Y4C0 1643 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 PLXNC1O60486 1568 aa-0.02□□□□□ -2.41
USP3-209ENST00000558925 VPS13BQ7Z7G8 4022 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 ANKRD50Q9ULJ7 1429 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 DEFB131BA0A096LNP1 70 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 K7EMI3 77 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 C3orf79P0CE67 100 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 IAPPP10997 89 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 KRTAP8-1Q8IUC2 63 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 DEPDC5O75140 1603 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 ABCA6Q8N139 1617 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 MROH1Q8NDA8 1641 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 GLI2P10070 1586 aa-0.03□□□□□ -2.41
USP3-209ENST00000558925 ANKRD36CQ5JPF3 1778 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 DNAH11Q96DT5 4516 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 DNAH17Q9UFH2 4485 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 NHSQ6T4R5 1651 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 ETDCA0A1B0GVM5 59 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 LINC01549A6NIU2 74 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 RPS27P42677 84 aaKnown RBP-0.04□□□□□ -2.42
USP3-209ENST00000558925 ATXN8Q156A1 80 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 KRTAP6-1Q3LI64 71 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 NCBP2-AS2Q69YL0 99 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 RPS27LQ71UM5 84 aaKnown RBP-0.04□□□□□ -2.42
USP3-209ENST00000558925 UBL5Q9BZL1 73 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 GNG13Q9P2W3 67 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 MAST1Q9Y2H9 1570 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 VPS13DQ5THJ4 4388 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 LY75O60449 1722 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 HFM1A2PYH4 1435 aa-0.04□□□□□ -2.42
USP3-209ENST00000558925 CROCC2H7BZ55 1655 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 C3P01024 1663 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 ITSN2Q9NZM3 1697 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 INO80Q9ULG1 1556 aaPredicted RBP-0.05□□□□□ -2.42
USP3-209ENST00000558925 MT1HL1P0DM35 61 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 DEFB104AQ8WTQ1 72 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 S4R3F8 94 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 EFCAB5A4FU69 1503 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 ABCC6O95255 1503 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 DNAH2Q9P225 4427 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 KIF1AQ12756 1690 aa-0.05□□□□□ -2.42
USP3-209ENST00000558925 TOGARAM1Q9Y4F4 1720 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 DNAH8Q96JB1 4490 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 A0A087WWC5 75 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 H0YGG7 62 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 H3BNG1 76 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 M0R1W7 72 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 MT1FP04733 61 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 SFTA3P0C7M3 94 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 PRLHP81277 87 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 KRTAP19-7Q3SYF9 63 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 CCDC180Q9P1Z9 1646 aa-0.06□□□□□ -2.42
USP3-209ENST00000558925 NFAT5O94916 1531 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 IQGAP1P46940 1657 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 ALS2Q96Q42 1657 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 SMIM31A0A1B0GVY4 71 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 IGIPA6NJ69 53 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 MRPL33O75394 65 aaKnown RBP-0.07□□□□□ -2.42
USP3-209ENST00000558925 MT2AP02795 61 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 MT1AP04731 61 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 MT1BP07438 61 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 FCER1GP30273 86 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 WT1-ASQ06250 92 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 DEFB114Q30KQ6 69 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 KRTAP19-2Q3LHN2 52 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 KRTAP19-8Q3LI54 63 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 MINOS1Q5TGZ0 78 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 DEFB106AQ8N104 65 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 S100ZQ8WXG8 99 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 TIAM1Q13009 1591 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 CDC42BPAQ5VT25 1732 aa-0.07□□□□□ -2.42
USP3-209ENST00000558925 MROH2AA6NES4 1674 aa-0.08□□□□□ -2.42
USP3-209ENST00000558925 C6orf48Q9UBA6 75 aa-0.08□□□□□ -2.42
USP3-209ENST00000558925 MROH2BQ7Z745 1585 aa-0.08□□□□□ -2.42
USP3-209ENST00000558925 AGLP35573 1532 aa-0.08□□□□□ -2.42
USP3-209ENST00000558925 ERICH3Q5RHP9 1530 aa-0.08□□□□□ -2.42
USP3-209ENST00000558925 IGLV5-48A0A075B6I7 105 aa-0.09□□□□□ -2.42
USP3-209ENST00000558925 C9orf92A6NGG3 77 aa-0.09□□□□□ -2.42
USP3-209ENST00000558925 ABCA10Q8WWZ4 1543 aa-0.09□□□□□ -2.42
USP3-209ENST00000558925 A0A1B0GUL6 1792 aa-0.09□□□□□ -2.42
USP3-209ENST00000558925 CLTCL1P53675 1640 aa-0.09□□□□□ -2.42
USP3-209ENST00000558925 PRXQ9BXM0 1461 aa-0.1□□□□□ -2.42
USP3-209ENST00000558925 SAMD9LQ8IVG5 1584 aa-0.1□□□□□ -2.42
USP3-209ENST00000558925 LMO7Q8WWI1 1683 aa-0.1□□□□□ -2.43
USP3-209ENST00000558925 DEFB110Q30KQ9 67 aa-0.1□□□□□ -2.43
USP3-209ENST00000558925 KRTAP19-5Q3LI72 72 aa-0.1□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms