RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 COL7A1Q02388 2944 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 H0YGX0 51 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 DEFB136Q30KP8 78 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 Q8IZM0 81 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 SMIM11BQ8TCY0 68 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 PRKDCP78527 4128 aaKnown RBP1.66□□□□□ -2.14
NUP54-209ENST00000510569 DNAH8Q96JB1 4490 aa1.66□□□□□ -2.14
NUP54-209ENST00000510569 RYR3Q15413 4870 aa1.65□□□□□ -2.15
NUP54-209ENST00000510569 GVQW2A0A096LPI5 108 aaPredicted RBP1.65□□□□□ -2.15
NUP54-209ENST00000510569 A0A1B0GU69 56 aa1.65□□□□□ -2.15
NUP54-209ENST00000510569 LINC00959A0A1B0GUT2 108 aa1.65□□□□□ -2.15
NUP54-209ENST00000510569 NCR3O14931 201 aa1.65□□□□□ -2.15
NUP54-209ENST00000510569 DNAH11Q96DT5 4516 aa1.64□□□□□ -2.15
NUP54-209ENST00000510569 KMT2CQ8NEZ4 4911 aaKnown RBP1.64□□□□□ -2.15
NUP54-209ENST00000510569 COX7BP24311 80 aa1.63□□□□□ -2.15
NUP54-209ENST00000510569 LINC00575Q6W349 94 aa1.63□□□□□ -2.15
NUP54-209ENST00000510569 NOP10Q9NPE3 64 aaKnown RBP1.63□□□□□ -2.15
NUP54-209ENST00000510569 Q6ZRX8 168 aa1.62□□□□□ -2.15
NUP54-209ENST00000510569 PLAC4Q8WY50 150 aa1.62□□□□□ -2.15
NUP54-209ENST00000510569 KCNQ1DNQ9H478 68 aa1.62□□□□□ -2.15
NUP54-209ENST00000510569 PRO0255Q9UI72 69 aa1.62□□□□□ -2.15
NUP54-209ENST00000510569 NOTCH1P46531 2555 aa1.62□□□□□ -2.15
NUP54-209ENST00000510569 DNAH5Q8TE73 4624 aa1.62□□□□□ -2.15
NUP54-209ENST00000510569 SACSQ9NZJ4 4579 aa1.62□□□□□ -2.15
NUP54-209ENST00000510569 STARD9Q9P2P6 4700 aa1.61□□□□□ -2.15
NUP54-209ENST00000510569 H3BNG1 76 aa1.61□□□□□ -2.15
NUP54-209ENST00000510569 HTN1P15515 57 aa1.61□□□□□ -2.15
NUP54-209ENST00000510569 CSMD3Q7Z407 3707 aa1.61□□□□□ -2.15
NUP54-209ENST00000510569 ALMS1Q8TCU4 4167 aa1.6□□□□□ -2.15
NUP54-209ENST00000510569 LY6G6CO95867 125 aa1.6□□□□□ -2.15
NUP54-209ENST00000510569 LINC00158P58513 81 aa1.6□□□□□ -2.15
NUP54-209ENST00000510569 LELP1Q5T871 98 aa1.6□□□□□ -2.15
NUP54-209ENST00000510569 FRAS1Q86XX4 4008 aa1.6□□□□□ -2.15
NUP54-209ENST00000510569 STAB2Q8WWQ8 2551 aa1.6□□□□□ -2.15
NUP54-209ENST00000510569 EPPK1P58107 5090 aaKnown RBP1.59□□□□□ -2.15
NUP54-209ENST00000510569 IGLV5-48A0A075B6I7 105 aa1.59□□□□□ -2.15
NUP54-209ENST00000510569 A0A096LPF7 62 aa1.59□□□□□ -2.15
NUP54-209ENST00000510569 SPRR1AP35321 89 aa1.59□□□□□ -2.15
NUP54-209ENST00000510569 HAMPP81172 84 aa1.59□□□□□ -2.15
NUP54-209ENST00000510569 UNQ6190/PRO20217Q6UXQ8 127 aa1.59□□□□□ -2.15
NUP54-209ENST00000510569 C6orf48Q9UBA6 75 aa1.59□□□□□ -2.15
NUP54-209ENST00000510569 RYR2Q92736 4967 aa1.58□□□□□ -2.16
NUP54-209ENST00000510569 SRRM2Q9UQ35 2752 aaKnown RBP1.58□□□□□ -2.16
NUP54-209ENST00000510569 ETDCA0A1B0GVM5 59 aa1.58□□□□□ -2.16
NUP54-209ENST00000510569 TOMM7Q9P0U1 55 aa1.58□□□□□ -2.16
NUP54-209ENST00000510569 LINC01556Q5JQF7 62 aa1.57□□□□□ -2.16
NUP54-209ENST00000510569 SSBP3-AS1Q7Z2R9 100 aa1.57□□□□□ -2.16
NUP54-209ENST00000510569 KMT2AQ03164 3969 aa1.56□□□□□ -2.16
NUP54-209ENST00000510569 ANGP03950 147 aaKnown RBP1.56□□□□□ -2.16
NUP54-209ENST00000510569 DEFB130BP0DP73 79 aa1.56□□□□□ -2.16
NUP54-209ENST00000510569 DEFB130AP0DP74 79 aa1.56□□□□□ -2.16
NUP54-209ENST00000510569 LRP1BQ9NZR2 4599 aa1.56□□□□□ -2.16
NUP54-209ENST00000510569 TENM2Q9NT68 2774 aa1.56□□□□□ -2.16
NUP54-209ENST00000510569 FAT2Q9NYQ8 4349 aa1.56□□□□□ -2.16
NUP54-209ENST00000510569 BIRC6Q9NR09 4857 aa1.55□□□□□ -2.16
NUP54-209ENST00000510569 K7EIL1 84 aa1.55□□□□□ -2.16
NUP54-209ENST00000510569 SPART-AS1P0CW21 52 aa1.55□□□□□ -2.16
NUP54-209ENST00000510569 RPL37P61927 97 aaKnown RBP1.55□□□□□ -2.16
NUP54-209ENST00000510569 DEFB135Q30KP9 77 aa1.55□□□□□ -2.16
NUP54-209ENST00000510569 CLPSL2Q6UWE3 100 aa1.55□□□□□ -2.16
NUP54-209ENST00000510569 PKHD1L1Q86WI1 4243 aa1.55□□□□□ -2.16
NUP54-209ENST00000510569 DEFB131BA0A096LNP1 70 aa1.54□□□□□ -2.16
NUP54-209ENST00000510569 SPRR1BP22528 89 aa1.54□□□□□ -2.16
NUP54-209ENST00000510569 WFDC10BQ8IUB3 73 aa1.54□□□□□ -2.16
NUP54-209ENST00000510569 PKD1P98161 4303 aa1.54□□□□□ -2.16
NUP54-209ENST00000510569 HYDINQ4G0P3 5121 aa1.53□□□□□ -2.16
NUP54-209ENST00000510569 VPS13BQ7Z7G8 4022 aa1.53□□□□□ -2.17
NUP54-209ENST00000510569 HERC2O95714 4834 aa1.52□□□□□ -2.17
NUP54-209ENST00000510569 APOBP04114 4563 aaKnown RBP1.52□□□□□ -2.17
NUP54-209ENST00000510569 DEFB4AO15263 64 aa1.52□□□□□ -2.17
NUP54-209ENST00000510569 KRTAP12-1P59990 96 aa1.52□□□□□ -2.17
NUP54-209ENST00000510569 DYNC1H1Q14204 4646 aaKnown RBP1.52□□□□□ -2.17
NUP54-209ENST00000510569 UBE2DNLQ8IWF7 75 aa1.51□□□□□ -2.17
NUP54-209ENST00000510569 K7EQZ3 153 aa1.5□□□□□ -2.17
NUP54-209ENST00000510569 TNXBP22105 4242 aa1.48□□□□□ -2.17
NUP54-209ENST00000510569 PKHD1P08F94 4074 aa1.48□□□□□ -2.17
NUP54-209ENST00000510569 KIAA1109Q2LD37 5005 aa1.48□□□□□ -2.17
NUP54-209ENST00000510569 HSPG2P98160 4391 aa1.48□□□□□ -2.17
NUP54-209ENST00000510569 MMP24-AS1A0A0U1RRL7 71 aa1.48□□□□□ -2.17
NUP54-209ENST00000510569 A0A096LNI7 61 aa1.47□□□□□ -2.17
NUP54-209ENST00000510569 HTN3P15516 51 aa1.47□□□□□ -2.17
NUP54-209ENST00000510569 PCOTHQ58A44 107 aa1.47□□□□□ -2.17
NUP54-209ENST00000510569 FAT1Q14517 4588 aa1.47□□□□□ -2.17
NUP54-209ENST00000510569 FAT3Q8TDW7 4589 aa1.47□□□□□ -2.17
NUP54-209ENST00000510569 PCLOQ9Y6V0 5065 aa1.46□□□□□ -2.17
NUP54-209ENST00000510569 COX6B2Q6YFQ2 88 aa1.46□□□□□ -2.18
NUP54-209ENST00000510569 TP53AIP1Q9HCN2 124 aa1.46□□□□□ -2.18
NUP54-209ENST00000510569 CRIPTQ9P021 101 aa1.46□□□□□ -2.18
NUP54-209ENST00000510569 APLNQ9ULZ1 77 aa1.46□□□□□ -2.18
NUP54-209ENST00000510569 ABCA13Q86UQ4 5058 aa1.45□□□□□ -2.18
NUP54-209ENST00000510569 LRP1Q07954 4544 aaKnown RBP1.44□□□□□ -2.18
NUP54-209ENST00000510569 PRLHP81277 87 aa1.44□□□□□ -2.18
NUP54-209ENST00000510569 DEFB105AQ8NG35 78 aa1.44□□□□□ -2.18
NUP54-209ENST00000510569 RYR1P21817 5038 aa1.43□□□□□ -2.18
NUP54-209ENST00000510569 MRPL34Q9BQ48 92 aaKnown RBP1.43□□□□□ -2.18
NUP54-209ENST00000510569 WFDC13Q8IUB5 93 aa1.42□□□□□ -2.18
NUP54-209ENST00000510569 MYCBP2O75592 4640 aa1.42□□□□□ -2.18
NUP54-209ENST00000510569 FLG2Q5D862 2391 aaPredicted RBP1.41□□□□□ -2.18
NUP54-209ENST00000510569 Q6ZSA8 131 aa1.4□□□□□ -2.19
NUP54-209ENST00000510569 HERC1Q15751 4861 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms