RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.63□□□□□ -1.51
SF3B4-202ENST00000457312 HIST1H2BHQ93079 126 aa5.63□□□□□ -1.51
SF3B4-202ENST00000457312 HIST1H2BNQ99877 126 aa5.63□□□□□ -1.51
SF3B4-202ENST00000457312 HIST1H2BMQ99879 126 aa5.63□□□□□ -1.51
SF3B4-202ENST00000457312 A0A1B0GW54 56 aa5.6□□□□□ -1.51
SF3B4-202ENST00000457312 P0C880 135 aa5.6□□□□□ -1.51
SF3B4-202ENST00000457312 CEND1Q8N111 149 aa5.6□□□□□ -1.51
SF3B4-202ENST00000457312 PRO1854Q9UHT4 67 aa5.59□□□□□ -1.51
SF3B4-202ENST00000457312 CASC2Q6XLA1 102 aa5.58□□□□□ -1.52
SF3B4-202ENST00000457312 NREPQ16612 68 aa5.57□□□□□ -1.52
SF3B4-202ENST00000457312 MT1LQ93083 61 aa5.57□□□□□ -1.52
SF3B4-202ENST00000457312 TMEM238LA0A1B0GVL6 79 aa5.56□□□□□ -1.52
SF3B4-202ENST00000457312 A6NJY4 79 aa5.56□□□□□ -1.52
SF3B4-202ENST00000457312 KRTAP12-4P60329 112 aa5.55□□□□□ -1.52
SF3B4-202ENST00000457312 KRTAP19-5Q3LI72 72 aa5.55□□□□□ -1.52
SF3B4-202ENST00000457312 PAM16Q9Y3D7 125 aa5.54□□□□□ -1.52
SF3B4-202ENST00000457312 HSBP1L1C9JCN9 74 aa5.51□□□□□ -1.53
SF3B4-202ENST00000457312 LOC110117498A0A087WWA1 95 aa5.5□□□□□ -1.53
SF3B4-202ENST00000457312 COA6Q5JTJ3 125 aaKnown RBP5.5□□□□□ -1.53
SF3B4-202ENST00000457312 KRTAP5-5Q701N2 237 aaPredicted RBP5.48□□□□□ -1.53
SF3B4-202ENST00000457312 SYNE1Q8NF91 8797 aaKnown RBP5.47□□□□□ -1.53
SF3B4-202ENST00000457312 C20orf197Q8N268 126 aa5.47□□□□□ -1.53
SF3B4-202ENST00000457312 PSMB2P49721 201 aa5.46□□□□□ -1.54
SF3B4-202ENST00000457312 KRTAP9-9Q9BYP9 154 aa5.46□□□□□ -1.54
SF3B4-202ENST00000457312 HIST3H2BBQ8N257 126 aa5.45□□□□□ -1.54
SF3B4-202ENST00000457312 Q8N9L7 120 aa5.45□□□□□ -1.54
SF3B4-202ENST00000457312 COX8AP10176 69 aa5.43□□□□□ -1.54
SF3B4-202ENST00000457312 K7EP34 96 aa5.4□□□□□ -1.54
SF3B4-202ENST00000457312 COX6CP09669 75 aa5.4□□□□□ -1.54
SF3B4-202ENST00000457312 BAALC-AS2P0C853 105 aa5.4□□□□□ -1.54
SF3B4-202ENST00000457312 FXYD2P54710 66 aa5.39□□□□□ -1.55
SF3B4-202ENST00000457312 BPY2O14599 106 aa5.38□□□□□ -1.55
SF3B4-202ENST00000457312 DLEU1O43261 78 aa5.38□□□□□ -1.55
SF3B4-202ENST00000457312 HIGD1BQ9P298 99 aa5.37□□□□□ -1.55
SF3B4-202ENST00000457312 JMJD7-PLA2G4BH0Y9G9 81 aa5.36□□□□□ -1.55
SF3B4-202ENST00000457312 BATFQ16520 125 aa5.36□□□□□ -1.55
SF3B4-202ENST00000457312 KRTAP5-2Q701N4 177 aa5.36□□□□□ -1.55
SF3B4-202ENST00000457312 CYP4F30PQ9H0H9 118 aa5.36□□□□□ -1.55
SF3B4-202ENST00000457312 C14orf132Q9NPU4 83 aa5.36□□□□□ -1.55
SF3B4-202ENST00000457312 A0A1W2PPM0 123 aa5.34□□□□□ -1.55
SF3B4-202ENST00000457312 HIST1H2BLQ99880 126 aa5.34□□□□□ -1.55
SF3B4-202ENST00000457312 KRTAP3-2Q9BYR7 98 aa5.34□□□□□ -1.55
SF3B4-202ENST00000457312 K7ERJ3 54 aa5.33□□□□□ -1.56
SF3B4-202ENST00000457312 NAA38Q9BRA0 125 aaKnown RBP5.32□□□□□ -1.56
SF3B4-202ENST00000457312 LOC100996750A0A140TA64 210 aa5.3□□□□□ -1.56
SF3B4-202ENST00000457312 MT-ATP8P03928 68 aa5.27□□□□□ -1.57
SF3B4-202ENST00000457312 C14orf144Q96I85 54 aa5.26□□□□□ -1.57
SF3B4-202ENST00000457312 A0A0D9SG42 100 aa5.24□□□□□ -1.57
SF3B4-202ENST00000457312 OBSCNQ5VST9 7968 aa5.22□□□□□ -1.57
SF3B4-202ENST00000457312 TP53AIP1Q9HCN2 124 aa5.2□□□□□ -1.58
SF3B4-202ENST00000457312 ACYP1P07311 99 aa5.19□□□□□ -1.58
SF3B4-202ENST00000457312 SCGB1C2P0DMR2 95 aa5.17□□□□□ -1.58
SF3B4-202ENST00000457312 TRAV22A0A0B4J277 110 aa5.12□□□□□ -1.59
SF3B4-202ENST00000457312 LOC101927531A0A1B0GV80 90 aa5.12□□□□□ -1.59
SF3B4-202ENST00000457312 CAMK2N1Q7Z7J9 78 aa5.12□□□□□ -1.59
SF3B4-202ENST00000457312 ATXN8Q156A1 80 aa5.09□□□□□ -1.59
SF3B4-202ENST00000457312 VAMP8Q9BV40 100 aa5.05□□□□□ -1.6
SF3B4-202ENST00000457312 SPATA45Q537H7 98 aa5.04□□□□□ -1.6
SF3B4-202ENST00000457312 S100A2P29034 98 aa5.02□□□□□ -1.61
SF3B4-202ENST00000457312 HSD52Q0P140 79 aa5.01□□□□□ -1.61
SF3B4-202ENST00000457312 C10orf95Q9H7T3 257 aa4.99□□□□□ -1.61
SF3B4-202ENST00000457312 KRTAP5-1Q6L8H4 278 aa4.96□□□□□ -1.62
SF3B4-202ENST00000457312 LCE3AQ5TA76 89 aa4.9□□□□□ -1.63
SF3B4-202ENST00000457312 KRTAP9-4Q9BYQ2 154 aa4.88□□□□□ -1.63
SF3B4-202ENST00000457312 SPCS1Q9Y6A9 102 aa4.82□□□□□ -1.64
SF3B4-202ENST00000457312 KRTAP6-1Q3LI64 71 aa4.78□□□□□ -1.64
SF3B4-202ENST00000457312 KRTAP6-2Q3LI66 62 aa4.78□□□□□ -1.64
SF3B4-202ENST00000457312 KRTAP13-4Q3LI77 160 aa4.78□□□□□ -1.64
SF3B4-202ENST00000457312 H0Y9P7 68 aa4.75□□□□□ -1.65
SF3B4-202ENST00000457312 UBL5Q9BZL1 73 aa4.74□□□□□ -1.65
SF3B4-202ENST00000457312 ATOX1O00244 68 aa4.73□□□□□ -1.65
SF3B4-202ENST00000457312 MT1AP04731 61 aa4.71□□□□□ -1.66
SF3B4-202ENST00000457312 TSTD3H0UI37 97 aa4.69□□□□□ -1.66
SF3B4-202ENST00000457312 H3BT86 120 aa4.66□□□□□ -1.66
SF3B4-202ENST00000457312 S100A6P06703 90 aa4.64□□□□□ -1.67
SF3B4-202ENST00000457312 UQCRQO14949 82 aa4.63□□□□□ -1.67
SF3B4-202ENST00000457312 DMAC1Q96GE9 116 aa4.63□□□□□ -1.67
SF3B4-202ENST00000457312 S100A1P23297 94 aa4.62□□□□□ -1.67
SF3B4-202ENST00000457312 KRTAP12-3P60328 96 aa4.62□□□□□ -1.67
SF3B4-202ENST00000457312 LINC00208Q96KT6 92 aa4.55□□□□□ -1.68
SF3B4-202ENST00000457312 UQCR10Q9UDW1 63 aa4.5□□□□□ -1.69
SF3B4-202ENST00000457312 TAX1BP3O14907 124 aa4.46□□□□□ -1.7
SF3B4-202ENST00000457312 TRAV7A0A075B6U4 112 aa4.44□□□□□ -1.7
SF3B4-202ENST00000457312 SPINT4Q6UDR6 99 aa4.43□□□□□ -1.7
SF3B4-202ENST00000457312 TNP1P09430 55 aa4.39□□□□□ -1.71
SF3B4-202ENST00000457312 SPTSSBQ8NFR3 76 aa4.38□□□□□ -1.71
SF3B4-202ENST00000457312 KRTAP12-1P59990 96 aa4.33□□□□□ -1.72
SF3B4-202ENST00000457312 MT3P25713 68 aa4.32□□□□□ -1.72
SF3B4-202ENST00000457312 PYY3Q5JQD4 70 aa4.32□□□□□ -1.72
SF3B4-202ENST00000457312 M0R143 59 aa4.31□□□□□ -1.72
SF3B4-202ENST00000457312 MP68P56378 58 aa4.3□□□□□ -1.72
SF3B4-202ENST00000457312 TMA7Q9Y2S6 64 aaKnown RBP4.29□□□□□ -1.72
SF3B4-202ENST00000457312 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
SF3B4-202ENST00000457312 ACYP2P14621 99 aa4.21□□□□□ -1.74
SF3B4-202ENST00000457312 KRTAP4-12Q9BQ66 201 aa4.21□□□□□ -1.74
SF3B4-202ENST00000457312 KRTAP4-2Q9BYR5 136 aa4.21□□□□□ -1.74
SF3B4-202ENST00000457312 KRTAP19-4Q3LI73 84 aa4.19□□□□□ -1.74
SF3B4-202ENST00000457312 SPATA8Q6RVD6 105 aa4.19□□□□□ -1.74
SF3B4-202ENST00000457312 HIST1H4AP62805 103 aaKnown RBP4.15□□□□□ -1.75
SF3B4-202ENST00000457312 OCR1Q9BZK8 76 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms