RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 UBE2DNLQ8IWF7 75 aa6.21□□□□□ -1.42
VPS39-214ENST00000614932 PLA2G2DQ9UNK4 145 aa6.21□□□□□ -1.42
VPS39-214ENST00000614932 ALMS1Q8TCU4 4167 aa6.19□□□□□ -1.42
VPS39-214ENST00000614932 KRTAP7-1Q8IUC3 87 aa6.18□□□□□ -1.42
VPS39-214ENST00000614932 P0C880 135 aa6.17□□□□□ -1.42
VPS39-214ENST00000614932 PLECQ15149 4684 aaKnown RBP6.17□□□□□ -1.42
VPS39-214ENST00000614932 NOTCH2NLQ7Z3S9 236 aa6.15□□□□□ -1.43
VPS39-214ENST00000614932 CHTF8P0CG12 524 aa6.14□□□□□ -1.43
VPS39-214ENST00000614932 SRRM2Q9UQ35 2752 aaKnown RBP6.14□□□□□ -1.43
VPS39-214ENST00000614932 DNHD1Q96M86 4753 aa6.13□□□□□ -1.43
VPS39-214ENST00000614932 PRKDCP78527 4128 aaKnown RBP6.13□□□□□ -1.43
VPS39-214ENST00000614932 APLNQ9ULZ1 77 aa6.13□□□□□ -1.43
VPS39-214ENST00000614932 A0A096LNI7 61 aa6.13□□□□□ -1.43
VPS39-214ENST00000614932 C8orf17Q9NRJ1 99 aa6.13□□□□□ -1.43
VPS39-214ENST00000614932 TLX1NBP0CAT3 122 aa6.12□□□□□ -1.43
VPS39-214ENST00000614932 DMAC1Q96GE9 116 aa6.12□□□□□ -1.43
VPS39-214ENST00000614932 STARD9Q9P2P6 4700 aa6.12□□□□□ -1.43
VPS39-214ENST00000614932 IGLV5-52A0A0A0MRZ9 124 aa6.1□□□□□ -1.43
VPS39-214ENST00000614932 MEGF8Q7Z7M0 2845 aa6.1□□□□□ -1.43
VPS39-214ENST00000614932 PRLHP81277 87 aa6.1□□□□□ -1.43
VPS39-214ENST00000614932 A8MUU9 505 aa6.08□□□□□ -1.44
VPS39-214ENST00000614932 LINC00483Q53H64 154 aa6.08□□□□□ -1.44
VPS39-214ENST00000614932 MRPL34Q9BQ48 92 aaKnown RBP6.08□□□□□ -1.44
VPS39-214ENST00000614932 KRTAP11-1Q8IUC1 163 aa6.07□□□□□ -1.44
VPS39-214ENST00000614932 KMT2AQ03164 3969 aa6.06□□□□□ -1.44
VPS39-214ENST00000614932 TGP01266 2768 aa6.06□□□□□ -1.44
VPS39-214ENST00000614932 PANO1I0J062 215 aa6.05□□□□□ -1.44
VPS39-214ENST00000614932 IGLV7-43P04211 117 aa6.05□□□□□ -1.44
VPS39-214ENST00000614932 NBDYA0A0U1RRE5 68 aa6.04□□□□□ -1.44
VPS39-214ENST00000614932 Q96NJ1 140 aa6.04□□□□□ -1.44
VPS39-214ENST00000614932 A0A1B0GVX0 72 aa6.03□□□□□ -1.44
VPS39-214ENST00000614932 SPRR1BP22528 89 aa6.03□□□□□ -1.44
VPS39-214ENST00000614932 NUPR2A6NF83 97 aa6.01□□□□□ -1.45
VPS39-214ENST00000614932 KRTAP16-1A8MUX0 517 aa6.01□□□□□ -1.45
VPS39-214ENST00000614932 LINC00304Q8N9R0 145 aa6.01□□□□□ -1.45
VPS39-214ENST00000614932 DYNC2H1Q8NCM8 4307 aaKnown RBP6.01□□□□□ -1.45
VPS39-214ENST00000614932 Q5W150 140 aa6.01□□□□□ -1.45
VPS39-214ENST00000614932 J3QL48 77 aa6□□□□□ -1.45
VPS39-214ENST00000614932 KRTAP13-3Q3SY46 172 aa6□□□□□ -1.45
VPS39-214ENST00000614932 CDK2AP2O75956 126 aa5.98□□□□□ -1.45
VPS39-214ENST00000614932 Q6ZRN7 208 aaPredicted RBP5.98□□□□□ -1.45
VPS39-214ENST00000614932 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.98□□□□□ -1.45
VPS39-214ENST00000614932 DNAH2Q9P225 4427 aa5.97□□□□□ -1.45
VPS39-214ENST00000614932 C14orf177Q52M58 125 aa5.97□□□□□ -1.45
VPS39-214ENST00000614932 VPS13DQ5THJ4 4388 aa5.96□□□□□ -1.46
VPS39-214ENST00000614932 FBN3Q75N90 2809 aa5.96□□□□□ -1.46
VPS39-214ENST00000614932 FRAS1Q86XX4 4008 aa5.96□□□□□ -1.46
VPS39-214ENST00000614932 C20orf166-AS1Q96NR2 134 aa5.95□□□□□ -1.46
VPS39-214ENST00000614932 NDUFAF8A1L188 74 aa5.95□□□□□ -1.46
VPS39-214ENST00000614932 LY6G6CO95867 125 aa5.94□□□□□ -1.46
VPS39-214ENST00000614932 A0A087WTM6 91 aa5.93□□□□□ -1.46
VPS39-214ENST00000614932 HECTD4Q9Y4D8 3996 aa5.91□□□□□ -1.46
VPS39-214ENST00000614932 SPINT4Q6UDR6 99 aa5.9□□□□□ -1.46
VPS39-214ENST00000614932 ANAPC11Q9NYG5 84 aa5.9□□□□□ -1.46
VPS39-214ENST00000614932 CRIPTQ9P021 101 aa5.9□□□□□ -1.46
VPS39-214ENST00000614932 IGLV9-49A0A0B4J1Y8 123 aa5.89□□□□□ -1.47
VPS39-214ENST00000614932 H0YAA0 97 aa5.88□□□□□ -1.47
VPS39-214ENST00000614932 SPACA4Q8TDM5 124 aa5.88□□□□□ -1.47
VPS39-214ENST00000614932 DNAH6Q9C0G6 4158 aa5.88□□□□□ -1.47
VPS39-214ENST00000614932 SSBP3-AS1Q7Z2R9 100 aa5.88□□□□□ -1.47
VPS39-214ENST00000614932 DNAH17Q9UFH2 4485 aa5.85□□□□□ -1.47
VPS39-214ENST00000614932 HYDINQ4G0P3 5121 aa5.85□□□□□ -1.47
VPS39-214ENST00000614932 PSORS1C2Q9UIG4 136 aa5.85□□□□□ -1.47
VPS39-214ENST00000614932 DNAH8Q96JB1 4490 aa5.85□□□□□ -1.47
VPS39-214ENST00000614932 Q6ZSA8 131 aa5.84□□□□□ -1.47
VPS39-214ENST00000614932 IGKV2-30P06310 120 aa5.84□□□□□ -1.47
VPS39-214ENST00000614932 KRTAP15-1Q3LI76 137 aa5.82□□□□□ -1.48
VPS39-214ENST00000614932 FLG2Q5D862 2391 aaPredicted RBP5.82□□□□□ -1.48
VPS39-214ENST00000614932 FAM229AH3BQW9 127 aa5.82□□□□□ -1.48
VPS39-214ENST00000614932 KRTAP10-2P60368 255 aa5.82□□□□□ -1.48
VPS39-214ENST00000614932 KRTAP13-1Q8IUC0 172 aa5.81□□□□□ -1.48
VPS39-214ENST00000614932 DNAH11Q96DT5 4516 aa5.8□□□□□ -1.48
VPS39-214ENST00000614932 DNAH5Q8TE73 4624 aa5.78□□□□□ -1.48
VPS39-214ENST00000614932 K7ERS5 55 aa5.78□□□□□ -1.48
VPS39-214ENST00000614932 SPINK1P00995 79 aa5.76□□□□□ -1.49
VPS39-214ENST00000614932 LUZP6Q538Z0 58 aa5.76□□□□□ -1.49
VPS39-214ENST00000614932 SPINK6Q6UWN8 80 aa5.76□□□□□ -1.49
VPS39-214ENST00000614932 CIRBP-AS1Q8TBR5 109 aa5.75□□□□□ -1.49
VPS39-214ENST00000614932 IGKV2D-30A0A075B6S6 120 aa5.75□□□□□ -1.49
VPS39-214ENST00000614932 A0A1B0GU33 70 aa5.75□□□□□ -1.49
VPS39-214ENST00000614932 WWC2-AS2Q96NR7 200 aa5.73□□□□□ -1.49
VPS39-214ENST00000614932 LRP1BQ9NZR2 4599 aa5.72□□□□□ -1.49
VPS39-214ENST00000614932 KRTAP10-1P60331 282 aa5.71□□□□□ -1.49
VPS39-214ENST00000614932 H1FX-AS1Q4G0G2 97 aa5.7□□□□□ -1.5
VPS39-214ENST00000614932 TPRXLQ17RH7 258 aa5.7□□□□□ -1.5
VPS39-214ENST00000614932 FAT2Q9NYQ8 4349 aa5.69□□□□□ -1.5
VPS39-214ENST00000614932 PKD1P98161 4303 aa5.68□□□□□ -1.5
VPS39-214ENST00000614932 PKHD1P08F94 4074 aa5.67□□□□□ -1.5
VPS39-214ENST00000614932 TYMSOSQ8TAI1 123 aa5.67□□□□□ -1.5
VPS39-214ENST00000614932 VPS13BQ7Z7G8 4022 aa5.64□□□□□ -1.51
VPS39-214ENST00000614932 SACSQ9NZJ4 4579 aa5.61□□□□□ -1.51
VPS39-214ENST00000614932 SMR3BP02814 79 aaPredicted RBP5.61□□□□□ -1.51
VPS39-214ENST00000614932 Q8N1X5 172 aa5.6□□□□□ -1.51
VPS39-214ENST00000614932 KRTAP13-2Q52LG2 175 aa5.59□□□□□ -1.51
VPS39-214ENST00000614932 SEC61BP60468 96 aaKnown RBP5.58□□□□□ -1.52
VPS39-214ENST00000614932 C10orf95Q9H7T3 257 aa5.57□□□□□ -1.52
VPS39-214ENST00000614932 FAT1Q14517 4588 aa5.54□□□□□ -1.52
VPS39-214ENST00000614932 COX6B2Q6YFQ2 88 aa5.53□□□□□ -1.52
VPS39-214ENST00000614932 KMT2CQ8NEZ4 4911 aaKnown RBP5.53□□□□□ -1.52
VPS39-214ENST00000614932 KRTAP1-4P0C5Y4 121 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms