RNA–Protein interactions for RNA: ENST00000584328.1

NF1-223, Transcript of neurofibromin 1, human

TSL 2

Gene NF1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-223	ENST00000584328	OXT	P01178	125 aa		3.2	□□□□□ -1.9
NF1-223	ENST00000584328	FUS	P35637	526 aa	Known RBP eCLIP	3.2	□□□□□ -1.9
NF1-223	ENST00000584328	KRTAP10-1	P60331	282 aa		3.2	□□□□□ -1.9
NF1-223	ENST00000584328	C9orf163	Q8N9P6	203 aa		3.2	□□□□□ -1.9
NF1-223	ENST00000584328	DIRC1	Q969H9	104 aa		3.2	□□□□□ -1.9
NF1-223	ENST00000584328	C16orf90	A8MZG2	172 aa		3.19	□□□□□ -1.9
NF1-223	ENST00000584328		F8WEM9	126 aa		3.19	□□□□□ -1.9
NF1-223	ENST00000584328	COX7B	P24311	80 aa		3.19	□□□□□ -1.9
NF1-223	ENST00000584328	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	3.18	□□□□□ -1.9
NF1-223	ENST00000584328	BPY2	O14599	106 aa		3.18	□□□□□ -1.9
NF1-223	ENST00000584328	KRTAP4-3	Q9BYR4	195 aa		3.18	□□□□□ -1.9
NF1-223	ENST00000584328	PANO1	I0J062	215 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328		M0R378	163 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328	TLX1NB	P0CAT3	122 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328	ELOF1	P60002	83 aa	Known RBP	3.17	□□□□□ -1.9
NF1-223	ENST00000584328	SPAG11B	Q08648	103 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328	NREP	Q16612	68 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328		Q6ZQY7	126 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328		Q6ZRU5	148 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328	TMEM254	Q8TBM7	123 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328	PKHD1L1	Q86WI1	4243 aa		3.17	□□□□□ -1.9
NF1-223	ENST00000584328		H0Y9J4	135 aa		3.16	□□□□□ -1.9
NF1-223	ENST00000584328	ZNF73	O43830	326 aa	Predicted RBP	3.16	□□□□□ -1.9
NF1-223	ENST00000584328	PRR3	P79522	188 aa	Known RBP	3.16	□□□□□ -1.9
NF1-223	ENST00000584328	SYCN	Q0VAF6	134 aa		3.16	□□□□□ -1.9
NF1-223	ENST00000584328	SPACA4	Q8TDM5	124 aa		3.16	□□□□□ -1.9
NF1-223	ENST00000584328	C6orf48	Q9UBA6	75 aa		3.16	□□□□□ -1.9
NF1-223	ENST00000584328	MYCBP2	O75592	4640 aa		3.16	□□□□□ -1.9
NF1-223	ENST00000584328		A0A0U1RQV1	116 aa		3.15	□□□□□ -1.91
NF1-223	ENST00000584328	KRTAP10-4	P60372	401 aa	Predicted RBP	3.15	□□□□□ -1.91
NF1-223	ENST00000584328	UNQ6190/PRO20217	Q6UXQ8	127 aa		3.15	□□□□□ -1.91
NF1-223	ENST00000584328	FP248	Q71RG6	208 aa	Predicted RBP	3.15	□□□□□ -1.91
NF1-223	ENST00000584328	CAMK2N2	Q96S95	79 aa		3.15	□□□□□ -1.91
NF1-223	ENST00000584328	SNURF	Q9Y675	71 aa		3.15	□□□□□ -1.91
NF1-223	ENST00000584328	FAT3	Q8TDW7	4589 aa		3.14	□□□□□ -1.91
NF1-223	ENST00000584328		A0A096LNI7	61 aa		3.14	□□□□□ -1.91
NF1-223	ENST00000584328	SCX	Q7RTU7	201 aa		3.14	□□□□□ -1.91
NF1-223	ENST00000584328	CIRBP-AS1	Q8TBR5	109 aa		3.14	□□□□□ -1.91
NF1-223	ENST00000584328		V9GYY9	64 aa		3.14	□□□□□ -1.91
NF1-223	ENST00000584328	NDUFB1	O75438	58 aa		3.13	□□□□□ -1.91
NF1-223	ENST00000584328	IGKV4-1	P06312	121 aa		3.13	□□□□□ -1.91
NF1-223	ENST00000584328	CHTF8	P0CG12	524 aa		3.13	□□□□□ -1.91
NF1-223	ENST00000584328	PLAC8	Q9NZF1	115 aa		3.13	□□□□□ -1.91
NF1-223	ENST00000584328	PKIG	Q9Y2B9	76 aa		3.13	□□□□□ -1.91
NF1-223	ENST00000584328	IGLV5-48	A0A075B6I7	105 aa		3.12	□□□□□ -1.91
NF1-223	ENST00000584328		Q1T7F1	81 aa		3.12	□□□□□ -1.91
NF1-223	ENST00000584328	C9orf116	Q5BN46	136 aa	Predicted RBP	3.12	□□□□□ -1.91
NF1-223	ENST00000584328	C1orf195	Q5TG92	126 aa		3.12	□□□□□ -1.91
NF1-223	ENST00000584328	LINC00474	Q9P2X8	69 aa		3.12	□□□□□ -1.91
NF1-223	ENST00000584328	SRRM2	Q9UQ35	2752 aa	Known RBP	3.12	□□□□□ -1.91
NF1-223	ENST00000584328		Q8NDZ9	215 aa		3.11	□□□□□ -1.91
NF1-223	ENST00000584328	BRK1	Q8WUW1	75 aa		3.11	□□□□□ -1.91
NF1-223	ENST00000584328	CYP4F30P	Q9H0H9	118 aa		3.11	□□□□□ -1.91
NF1-223	ENST00000584328	HERC1	Q15751	4861 aa		3.11	□□□□□ -1.91
NF1-223	ENST00000584328	LRP1	Q07954	4544 aa	Known RBP	3.11	□□□□□ -1.91
NF1-223	ENST00000584328	ETDC	A0A1B0GVM5	59 aa		3.1	□□□□□ -1.91
NF1-223	ENST00000584328		A0A1W2PNN7	141 aa		3.1	□□□□□ -1.91
NF1-223	ENST00000584328		H3BPC8	53 aa		3.1	□□□□□ -1.91
NF1-223	ENST00000584328	PRR15	Q8IV56	129 aa		3.1	□□□□□ -1.91
NF1-223	ENST00000584328	KCNQ1DN	Q9H478	68 aa		3.1	□□□□□ -1.91
NF1-223	ENST00000584328	IGKV2-24	A0A0C4DH68	120 aa		3.09	□□□□□ -1.91
NF1-223	ENST00000584328	hDV103S1	A0JD37	113 aa		3.09	□□□□□ -1.91
NF1-223	ENST00000584328		Q5VSD8	79 aa		3.09	□□□□□ -1.91
NF1-223	ENST00000584328	NKAPP1	Q8N9T2	125 aa		3.09	□□□□□ -1.91
NF1-223	ENST00000584328	HMCN2	Q8NDA2	5059 aa		3.09	□□□□□ -1.92
NF1-223	ENST00000584328	TNXB	P22105	4242 aa		3.08	□□□□□ -1.92
NF1-223	ENST00000584328	SMR3B	P02814	79 aa	Predicted RBP	3.08	□□□□□ -1.92
NF1-223	ENST00000584328	ZCCHC13	Q8WW36	166 aa	Known RBP	3.08	□□□□□ -1.92
NF1-223	ENST00000584328	SPRR4	Q96PI1	79 aa		3.08	□□□□□ -1.92
NF1-223	ENST00000584328	XAGE1A	Q9HD64	81 aa		3.08	□□□□□ -1.92
NF1-223	ENST00000584328	MP68	P56378	58 aa		3.07	□□□□□ -1.92
NF1-223	ENST00000584328	SPANXA2-OT1	Q8N9U9	137 aa		3.07	□□□□□ -1.92
NF1-223	ENST00000584328	HIGD2A	Q9BW72	106 aa		3.07	□□□□□ -1.92
NF1-223	ENST00000584328	HCG22	E2RYF7	251 aa		3.06	□□□□□ -1.92
NF1-223	ENST00000584328	C1orf137	Q5JT78	98 aa		3.06	□□□□□ -1.92
NF1-223	ENST00000584328		Q6ZRX8	168 aa		3.06	□□□□□ -1.92
NF1-223	ENST00000584328	PHF5A	Q7RTV0	110 aa	Known RBP	3.06	□□□□□ -1.92
NF1-223	ENST00000584328	MRPL55	Q7Z7F7	128 aa	Known RBP	3.06	□□□□□ -1.92
NF1-223	ENST00000584328	LIMD2	Q9BT23	127 aa		3.06	□□□□□ -1.92
NF1-223	ENST00000584328	SPRR1A	P35321	89 aa		3.05	□□□□□ -1.92
NF1-223	ENST00000584328	PMAIP1	Q13794	54 aa		3.05	□□□□□ -1.92
NF1-223	ENST00000584328	C1orf64	Q8NEQ6	169 aa		3.05	□□□□□ -1.92
NF1-223	ENST00000584328	IGLV1-50	A0A075B6I6	118 aa		3.04	□□□□□ -1.92
NF1-223	ENST00000584328	RPL37A	P61513	92 aa	Known RBP	3.04	□□□□□ -1.92
NF1-223	ENST00000584328	FAM229B	Q4G0N7	80 aa		3.04	□□□□□ -1.92
NF1-223	ENST00000584328	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.04	□□□□□ -1.92
NF1-223	ENST00000584328	KRTAP13-1	Q8IUC0	172 aa		3.04	□□□□□ -1.92
NF1-223	ENST00000584328	C7orf33	Q8WU49	177 aa		3.04	□□□□□ -1.92
NF1-223	ENST00000584328	PSORS1C2	Q9UIG4	136 aa		3.04	□□□□□ -1.92
NF1-223	ENST00000584328	IGLV8-61	A0A075B6I0	122 aa		3.03	□□□□□ -1.92
NF1-223	ENST00000584328		A0A1W2PNM2	257 aa		3.03	□□□□□ -1.92
NF1-223	ENST00000584328	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	3.03	□□□□□ -1.92
NF1-223	ENST00000584328	UBE2A	P49459	152 aa		3.03	□□□□□ -1.92
NF1-223	ENST00000584328	UBE2B	P63146	152 aa		3.03	□□□□□ -1.92
NF1-223	ENST00000584328		Q8N9L7	120 aa		3.03	□□□□□ -1.92
NF1-223	ENST00000584328	DEFB105A	Q8NG35	78 aa		3.03	□□□□□ -1.92
NF1-223	ENST00000584328		Q9BRP9	147 aa		3.03	□□□□□ -1.92
NF1-223	ENST00000584328	TRAV22	A0A0B4J277	110 aa		3.02	□□□□□ -1.93
NF1-223	ENST00000584328	IGLV7-43	P04211	117 aa		3.02	□□□□□ -1.93
NF1-223	ENST00000584328	CD164	Q04900	197 aa		3.01	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms