RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LINC01556Q5JQF7 62 aa6.62□□□□□ -1.35
CLK3-226ENST00000569406 CRIPTQ9P021 101 aa6.62□□□□□ -1.35
CLK3-226ENST00000569406 CASC10Q5T4H9 136 aa6.61□□□□□ -1.35
CLK3-226ENST00000569406 NDUFAF8A1L188 74 aa6.6□□□□□ -1.35
CLK3-226ENST00000569406 KRTAP7-1Q8IUC3 87 aa6.6□□□□□ -1.35
CLK3-226ENST00000569406 A8MUU9 505 aa6.59□□□□□ -1.35
CLK3-226ENST00000569406 KMT2AQ03164 3969 aa6.59□□□□□ -1.35
CLK3-226ENST00000569406 ACYP2P14621 99 aa6.59□□□□□ -1.35
CLK3-226ENST00000569406 HECTD4Q9Y4D8 3996 aa6.58□□□□□ -1.36
CLK3-226ENST00000569406 MMP24-AS1A0A0U1RRL7 71 aa6.58□□□□□ -1.36
CLK3-226ENST00000569406 K7EIL1 84 aa6.58□□□□□ -1.36
CLK3-226ENST00000569406 SRRM2Q9UQ35 2752 aaKnown RBP6.58□□□□□ -1.36
CLK3-226ENST00000569406 LINC00483Q53H64 154 aa6.57□□□□□ -1.36
CLK3-226ENST00000569406 CDK2AP2O75956 126 aa6.57□□□□□ -1.36
CLK3-226ENST00000569406 TP53AIP1Q9HCN2 124 aa6.57□□□□□ -1.36
CLK3-226ENST00000569406 DNHD1Q96M86 4753 aa6.56□□□□□ -1.36
CLK3-226ENST00000569406 IGLV5-52A0A0A0MRZ9 124 aa6.56□□□□□ -1.36
CLK3-226ENST00000569406 IGLV9-49A0A0B4J1Y8 123 aa6.56□□□□□ -1.36
CLK3-226ENST00000569406 VPS13DQ5THJ4 4388 aa6.55□□□□□ -1.36
CLK3-226ENST00000569406 DNAH2Q9P225 4427 aa6.54□□□□□ -1.36
CLK3-226ENST00000569406 SPINT4Q6UDR6 99 aa6.54□□□□□ -1.36
CLK3-226ENST00000569406 CHTF8P0CG12 524 aa6.54□□□□□ -1.36
CLK3-226ENST00000569406 FRAS1Q86XX4 4008 aa6.53□□□□□ -1.36
CLK3-226ENST00000569406 FBN3Q75N90 2809 aa6.53□□□□□ -1.36
CLK3-226ENST00000569406 KRTAP1-5Q9BYS1 174 aa6.52□□□□□ -1.37
CLK3-226ENST00000569406 KRTAP4-16G5E9R7 235 aaPredicted RBP6.52□□□□□ -1.37
CLK3-226ENST00000569406 SPINK6Q6UWN8 80 aa6.52□□□□□ -1.37
CLK3-226ENST00000569406 MEGF8Q7Z7M0 2845 aa6.51□□□□□ -1.37
CLK3-226ENST00000569406 TLX1NBP0CAT3 122 aa6.5□□□□□ -1.37
CLK3-226ENST00000569406 LINC00472Q9H8W2 130 aa6.5□□□□□ -1.37
CLK3-226ENST00000569406 SSBP3-AS1Q7Z2R9 100 aa6.5□□□□□ -1.37
CLK3-226ENST00000569406 C20orf166-AS1Q96NR2 134 aa6.49□□□□□ -1.37
CLK3-226ENST00000569406 PLA2G2DQ9UNK4 145 aa6.47□□□□□ -1.37
CLK3-226ENST00000569406 SPRR1AP35321 89 aa6.46□□□□□ -1.37
CLK3-226ENST00000569406 DMAC1Q96GE9 116 aa6.45□□□□□ -1.38
CLK3-226ENST00000569406 DNAH8Q96JB1 4490 aa6.44□□□□□ -1.38
CLK3-226ENST00000569406 C8orf17Q9NRJ1 99 aa6.44□□□□□ -1.38
CLK3-226ENST00000569406 LINC00304Q8N9R0 145 aa6.43□□□□□ -1.38
CLK3-226ENST00000569406 NOTCH2NLQ7Z3S9 236 aa6.43□□□□□ -1.38
CLK3-226ENST00000569406 DNAH6Q9C0G6 4158 aa6.42□□□□□ -1.38
CLK3-226ENST00000569406 DNAH17Q9UFH2 4485 aa6.41□□□□□ -1.38
CLK3-226ENST00000569406 IGLV7-43P04211 117 aa6.41□□□□□ -1.38
CLK3-226ENST00000569406 LUZP6Q538Z0 58 aa6.41□□□□□ -1.38
CLK3-226ENST00000569406 KRTAP11-1Q8IUC1 163 aa6.4□□□□□ -1.39
CLK3-226ENST00000569406 MRPL34Q9BQ48 92 aaKnown RBP6.39□□□□□ -1.39
CLK3-226ENST00000569406 APLNQ9ULZ1 77 aa6.39□□□□□ -1.39
CLK3-226ENST00000569406 ANAPC11Q9NYG5 84 aa6.37□□□□□ -1.39
CLK3-226ENST00000569406 Q5W150 140 aa6.36□□□□□ -1.39
CLK3-226ENST00000569406 ALMS1Q8TCU4 4167 aa6.36□□□□□ -1.39
CLK3-226ENST00000569406 SPINK1P00995 79 aa6.35□□□□□ -1.39
CLK3-226ENST00000569406 C14orf177Q52M58 125 aa6.34□□□□□ -1.39
CLK3-226ENST00000569406 Q6ZRN7 208 aaPredicted RBP6.34□□□□□ -1.39
CLK3-226ENST00000569406 DNAH11Q96DT5 4516 aa6.34□□□□□ -1.39
CLK3-226ENST00000569406 NUPR2A6NF83 97 aa6.34□□□□□ -1.39
CLK3-226ENST00000569406 CIRBP-AS1Q8TBR5 109 aa6.33□□□□□ -1.4
CLK3-226ENST00000569406 TGP01266 2768 aa6.33□□□□□ -1.4
CLK3-226ENST00000569406 DNAH5Q8TE73 4624 aa6.33□□□□□ -1.4
CLK3-226ENST00000569406 HYDINQ4G0P3 5121 aa6.33□□□□□ -1.4
CLK3-226ENST00000569406 PANO1I0J062 215 aa6.32□□□□□ -1.4
CLK3-226ENST00000569406 A0A1B0GVX0 72 aa6.32□□□□□ -1.4
CLK3-226ENST00000569406 PKD1P98161 4303 aa6.32□□□□□ -1.4
CLK3-226ENST00000569406 A0A087WTM6 91 aa6.3□□□□□ -1.4
CLK3-226ENST00000569406 FAT2Q9NYQ8 4349 aa6.29□□□□□ -1.4
CLK3-226ENST00000569406 K7ERS5 55 aa6.29□□□□□ -1.4
CLK3-226ENST00000569406 PSORS1C2Q9UIG4 136 aa6.26□□□□□ -1.41
CLK3-226ENST00000569406 H0YAA0 97 aa6.26□□□□□ -1.41
CLK3-226ENST00000569406 Q96NJ1 140 aa6.26□□□□□ -1.41
CLK3-226ENST00000569406 KRTAP13-1Q8IUC0 172 aa6.24□□□□□ -1.41
CLK3-226ENST00000569406 NBDYA0A0U1RRE5 68 aa6.24□□□□□ -1.41
CLK3-226ENST00000569406 KRTAP15-1Q3LI76 137 aa6.21□□□□□ -1.41
CLK3-226ENST00000569406 Q6ZSA8 131 aa6.21□□□□□ -1.41
CLK3-226ENST00000569406 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.21□□□□□ -1.42
CLK3-226ENST00000569406 DMBT1Q9UGM3 2413 aaPredicted RBP6.21□□□□□ -1.42
CLK3-226ENST00000569406 LRP1BQ9NZR2 4599 aa6.2□□□□□ -1.42
CLK3-226ENST00000569406 LY6G6CO95867 125 aa6.2□□□□□ -1.42
CLK3-226ENST00000569406 IGKV2D-30A0A075B6S6 120 aa6.19□□□□□ -1.42
CLK3-226ENST00000569406 IGKV2-30P06310 120 aa6.19□□□□□ -1.42
CLK3-226ENST00000569406 SPRR1BP22528 89 aa6.19□□□□□ -1.42
CLK3-226ENST00000569406 PKHD1P08F94 4074 aa6.18□□□□□ -1.42
CLK3-226ENST00000569406 SPACA4Q8TDM5 124 aa6.18□□□□□ -1.42
CLK3-226ENST00000569406 VPS13BQ7Z7G8 4022 aa6.17□□□□□ -1.42
CLK3-226ENST00000569406 KRTAP13-3Q3SY46 172 aa6.17□□□□□ -1.42
CLK3-226ENST00000569406 KRTAP21-3Q3LHN1 58 aa6.16□□□□□ -1.42
CLK3-226ENST00000569406 SEC61BP60468 96 aaKnown RBP6.15□□□□□ -1.43
CLK3-226ENST00000569406 A0A1B0GU33 70 aa6.14□□□□□ -1.43
CLK3-226ENST00000569406 C10orf95Q9H7T3 257 aa6.13□□□□□ -1.43
CLK3-226ENST00000569406 TPRXLQ17RH7 258 aa6.12□□□□□ -1.43
CLK3-226ENST00000569406 SACSQ9NZJ4 4579 aa6.09□□□□□ -1.43
CLK3-226ENST00000569406 FAM229AH3BQW9 127 aa6.09□□□□□ -1.43
CLK3-226ENST00000569406 Q8N1X5 172 aa6.07□□□□□ -1.44
CLK3-226ENST00000569406 TYMSOSQ8TAI1 123 aa6.07□□□□□ -1.44
CLK3-226ENST00000569406 WWC2-AS2Q96NR7 200 aa6.05□□□□□ -1.44
CLK3-226ENST00000569406 H1FX-AS1Q4G0G2 97 aa6.03□□□□□ -1.44
CLK3-226ENST00000569406 KRTAP10-2P60368 255 aa6.01□□□□□ -1.45
CLK3-226ENST00000569406 KMT2CQ8NEZ4 4911 aaKnown RBP5.93□□□□□ -1.46
CLK3-226ENST00000569406 A0A0D9SG42 100 aa5.93□□□□□ -1.46
CLK3-226ENST00000569406 DYNC1H1Q14204 4646 aaKnown RBP5.93□□□□□ -1.46
CLK3-226ENST00000569406 APOBP04114 4563 aaKnown RBP5.91□□□□□ -1.46
CLK3-226ENST00000569406 PKHD1L1Q86WI1 4243 aa5.91□□□□□ -1.46
CLK3-226ENST00000569406 KRTAP10-1P60331 282 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms