RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 UQCR10Q9UDW1 63 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 TRAV30A0A087WSZ9 112 aa0.42□□□□□ -2.34
SCFD1-221ENST00000556534 TMEM218A2RU14 115 aa0.42□□□□□ -2.34
SCFD1-221ENST00000556534 NAP1L6A6NFF2 107 aa0.42□□□□□ -2.34
SCFD1-221ENST00000556534 LCN9Q8WX39 176 aa0.42□□□□□ -2.34
SCFD1-221ENST00000556534 A0A0D9SFI3 127 aa0.41□□□□□ -2.34
SCFD1-221ENST00000556534 hADV29S1A0JD25 119 aa0.41□□□□□ -2.34
SCFD1-221ENST00000556534 FAM223AQ8IWN6 122 aa0.41□□□□□ -2.34
SCFD1-221ENST00000556534 NXT2Q9NPJ8 142 aaKnown RBP0.41□□□□□ -2.34
SCFD1-221ENST00000556534 PRO0255Q9UI72 69 aa0.41□□□□□ -2.34
SCFD1-221ENST00000556534 H3BSH0 61 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 H3BUX3 64 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 BCE1O60756 84 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 IGLC1P0CG04 106 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 S100A3P33764 101 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 SFTA2Q6UW10 78 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 SPRR4Q96PI1 79 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 CNFNQ9BYD5 112 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 PRO1854Q9UHT4 67 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 ARL2-SNX15V9GYD0 113 aa0.4□□□□□ -2.35
SCFD1-221ENST00000556534 SPINK1P00995 79 aa0.39□□□□□ -2.35
SCFD1-221ENST00000556534 MT2AP02795 61 aa0.39□□□□□ -2.35
SCFD1-221ENST00000556534 MT1FP04733 61 aa0.39□□□□□ -2.35
SCFD1-221ENST00000556534 DEFB136Q30KP8 78 aa0.39□□□□□ -2.35
SCFD1-221ENST00000556534 Q6JHZ5 121 aa0.39□□□□□ -2.35
SCFD1-221ENST00000556534 SYNE1Q8NF91 8797 aaKnown RBP0.39□□□□□ -2.35
SCFD1-221ENST00000556534 UQCRHLA0A096LP55 91 aa0.38□□□□□ -2.35
SCFD1-221ENST00000556534 CRYM-AS1A6NIL9 109 aa0.38□□□□□ -2.35
SCFD1-221ENST00000556534 H0YGG7 62 aa0.38□□□□□ -2.35
SCFD1-221ENST00000556534 M0R3E3 92 aa0.38□□□□□ -2.35
SCFD1-221ENST00000556534 S100A10P60903 97 aa0.38□□□□□ -2.35
SCFD1-221ENST00000556534 Q5BKY6 102 aa0.38□□□□□ -2.35
SCFD1-221ENST00000556534 SPCS1Q9Y6A9 102 aa0.38□□□□□ -2.35
SCFD1-221ENST00000556534 DEFB131BA0A096LNP1 70 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 MPC2O95563 127 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 MT-ATP8P03928 68 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 MGPP08493 103 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 COX6CP09669 75 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 TRAPPC2P0DI81 140 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 TRAPPC2BP0DI82 140 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 DEFB135Q30KP9 77 aa0.37□□□□□ -2.35
SCFD1-221ENST00000556534 FAM223BA6NKX1 122 aa0.36□□□□□ -2.35
SCFD1-221ENST00000556534 KRTDAPP60985 99 aa0.36□□□□□ -2.35
SCFD1-221ENST00000556534 SEC11AP67812 179 aa0.36□□□□□ -2.35
SCFD1-221ENST00000556534 KRTAP20-2Q3LI61 65 aa0.36□□□□□ -2.35
SCFD1-221ENST00000556534 I3L2K1 104 aa0.35□□□□□ -2.35
SCFD1-221ENST00000556534 GNGT2O14610 69 aa0.35□□□□□ -2.35
SCFD1-221ENST00000556534 DEFB4AO15263 64 aa0.35□□□□□ -2.35
SCFD1-221ENST00000556534 ZNF720Q7Z2F6 126 aa0.35□□□□□ -2.35
SCFD1-221ENST00000556534 ACBD7Q8N6N7 88 aa0.35□□□□□ -2.35
SCFD1-221ENST00000556534 FXYD6-FXYD2A0A087WZ82 144 aa0.34□□□□□ -2.36
SCFD1-221ENST00000556534 CFDP00746 253 aaPredicted RBP0.34□□□□□ -2.36
SCFD1-221ENST00000556534 TMEM263Q8WUH6 116 aaKnown RBP0.34□□□□□ -2.36
SCFD1-221ENST00000556534 M0R1W7 72 aa0.33□□□□□ -2.36
SCFD1-221ENST00000556534 C10orf113Q5VZT2 155 aa0.33□□□□□ -2.36
SCFD1-221ENST00000556534 COX6B2Q6YFQ2 88 aa0.33□□□□□ -2.36
SCFD1-221ENST00000556534 KRTAP8-1Q8IUC2 63 aa0.33□□□□□ -2.36
SCFD1-221ENST00000556534 DEFB106AQ8N104 65 aa0.33□□□□□ -2.36
SCFD1-221ENST00000556534 TP53AIP1Q9HCN2 124 aa0.33□□□□□ -2.36
SCFD1-221ENST00000556534 DEFB114Q30KQ6 69 aa0.32□□□□□ -2.36
SCFD1-221ENST00000556534 Q8IZM0 81 aa0.32□□□□□ -2.36
SCFD1-221ENST00000556534 A0A0G2JND7 137 aa0.31□□□□□ -2.36
SCFD1-221ENST00000556534 MRPL33O75394 65 aaKnown RBP0.31□□□□□ -2.36
SCFD1-221ENST00000556534 SAA2P0DJI9 122 aaPredicted RBP0.31□□□□□ -2.36
SCFD1-221ENST00000556534 TDRG1Q3Y452 100 aa0.31□□□□□ -2.36
SCFD1-221ENST00000556534 PMCHL2Q9BQD1 86 aa0.31□□□□□ -2.36
SCFD1-221ENST00000556534 KAAG1Q9UBP8 84 aa0.31□□□□□ -2.36
SCFD1-221ENST00000556534 A0A1B0GWA3 101 aa0.3□□□□□ -2.36
SCFD1-221ENST00000556534 M0R143 59 aa0.3□□□□□ -2.36
SCFD1-221ENST00000556534 SPART-AS1P0CW21 52 aa0.3□□□□□ -2.36
SCFD1-221ENST00000556534 SNRPFP62306 86 aaKnown RBP0.3□□□□□ -2.36
SCFD1-221ENST00000556534 TRBV6-1A0A0K0K1D8 114 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 H7BZZ5 65 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 WFDC2Q14508 124 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 PIGYQ3MUY2 71 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 MINOS1Q5TGZ0 78 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 CACFD1Q9UGQ2 172 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 AP4S1Q9Y587 144 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 HILPDAQ9Y5L2 63 aa0.29□□□□□ -2.36
SCFD1-221ENST00000556534 NDUFC1O43677 76 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 GYPAP02724 150 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 S100A8P05109 93 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 MT1BP07438 61 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 HTN3P15516 51 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 SNHG12Q9BXW3 62 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 DPY30Q9C005 99 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 PRO1933Q9H354 126 aa0.28□□□□□ -2.36
SCFD1-221ENST00000556534 A0A087WVE0 104 aa0.27□□□□□ -2.37
SCFD1-221ENST00000556534 TRBV25-1A0A075B6N4 114 aa0.26□□□□□ -2.37
SCFD1-221ENST00000556534 LINC00959A0A1B0GUT2 108 aa0.26□□□□□ -2.37
SCFD1-221ENST00000556534 H3BNG1 76 aa0.26□□□□□ -2.37
SCFD1-221ENST00000556534 ATOX1O00244 68 aa0.26□□□□□ -2.37
SCFD1-221ENST00000556534 LINC00032P0C843 101 aa0.26□□□□□ -2.37
SCFD1-221ENST00000556534 TRGV9Q99603 122 aa0.26□□□□□ -2.37
SCFD1-221ENST00000556534 VAMP8Q9BV40 100 aa0.26□□□□□ -2.37
SCFD1-221ENST00000556534 SERP2Q8N6R1 65 aa0.25□□□□□ -2.37
SCFD1-221ENST00000556534 A0A096LPF7 62 aa0.24□□□□□ -2.37
SCFD1-221ENST00000556534 C7orf77A4D0Y5 90 aa0.24□□□□□ -2.37
SCFD1-221ENST00000556534 IQCF6A8MYZ5 107 aa0.24□□□□□ -2.37
SCFD1-221ENST00000556534 CCL22O00626 93 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms