RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DEFB4AO15263 64 aa5.69□□□□□ -1.5
CLIP1-214ENST00000540539 PRKDCP78527 4128 aaKnown RBP5.69□□□□□ -1.5
CLIP1-214ENST00000540539 STAB2Q8WWQ8 2551 aa5.69□□□□□ -1.5
CLIP1-214ENST00000540539 NOTCH2NLQ7Z3S9 236 aa5.68□□□□□ -1.5
CLIP1-214ENST00000540539 KRTAP7-1Q8IUC3 87 aa5.68□□□□□ -1.5
CLIP1-214ENST00000540539 FBN3Q75N90 2809 aa5.68□□□□□ -1.5
CLIP1-214ENST00000540539 DMAC1Q96GE9 116 aa5.67□□□□□ -1.5
CLIP1-214ENST00000540539 DNAH9Q9NYC9 4486 aa5.67□□□□□ -1.5
CLIP1-214ENST00000540539 HUWE1Q7Z6Z7 4374 aaKnown RBP5.67□□□□□ -1.5
CLIP1-214ENST00000540539 C8orf17Q9NRJ1 99 aa5.66□□□□□ -1.5
CLIP1-214ENST00000540539 DNAH10OSP0CZ25 163 aa5.65□□□□□ -1.5
CLIP1-214ENST00000540539 SPART-AS1P0CW21 52 aa5.65□□□□□ -1.51
CLIP1-214ENST00000540539 TGP01266 2768 aa5.65□□□□□ -1.51
CLIP1-214ENST00000540539 CSMD3Q7Z407 3707 aa5.64□□□□□ -1.51
CLIP1-214ENST00000540539 PRLHP81277 87 aa5.62□□□□□ -1.51
CLIP1-214ENST00000540539 SRRM2Q9UQ35 2752 aaKnown RBP5.62□□□□□ -1.51
CLIP1-214ENST00000540539 KRTAP16-1A8MUX0 517 aa5.61□□□□□ -1.51
CLIP1-214ENST00000540539 HTN3P15516 51 aa5.61□□□□□ -1.51
CLIP1-214ENST00000540539 LINC00304Q8N9R0 145 aa5.61□□□□□ -1.51
CLIP1-214ENST00000540539 Q96NJ1 140 aa5.61□□□□□ -1.51
CLIP1-214ENST00000540539 TLX1NBP0CAT3 122 aa5.61□□□□□ -1.51
CLIP1-214ENST00000540539 NDUFAF8A1L188 74 aa5.6□□□□□ -1.51
CLIP1-214ENST00000540539 IGLV7-43P04211 117 aa5.6□□□□□ -1.51
CLIP1-214ENST00000540539 MRPL34Q9BQ48 92 aaKnown RBP5.6□□□□□ -1.51
CLIP1-214ENST00000540539 Q5W150 140 aa5.6□□□□□ -1.51
CLIP1-214ENST00000540539 FLG2Q5D862 2391 aaPredicted RBP5.59□□□□□ -1.51
CLIP1-214ENST00000540539 KRTAP13-3Q3SY46 172 aa5.58□□□□□ -1.52
CLIP1-214ENST00000540539 CASC10Q5T4H9 136 aa5.58□□□□□ -1.52
CLIP1-214ENST00000540539 C20orf166-AS1Q96NR2 134 aa5.58□□□□□ -1.52
CLIP1-214ENST00000540539 A0A096LNI7 61 aa5.57□□□□□ -1.52
CLIP1-214ENST00000540539 CRIPTQ9P021 101 aa5.57□□□□□ -1.52
CLIP1-214ENST00000540539 A0A1B0GVX0 72 aa5.56□□□□□ -1.52
CLIP1-214ENST00000540539 SPRR1BP22528 89 aa5.53□□□□□ -1.52
CLIP1-214ENST00000540539 DNAH7Q8WXX0 4024 aa5.53□□□□□ -1.52
CLIP1-214ENST00000540539 H3BNG1 76 aa5.52□□□□□ -1.53
CLIP1-214ENST00000540539 A0A087WTM6 91 aa5.51□□□□□ -1.53
CLIP1-214ENST00000540539 H0YAA0 97 aa5.51□□□□□ -1.53
CLIP1-214ENST00000540539 WWC2-AS2Q96NR7 200 aa5.5□□□□□ -1.53
CLIP1-214ENST00000540539 NUPR2A6NF83 97 aa5.5□□□□□ -1.53
CLIP1-214ENST00000540539 SPINT4Q6UDR6 99 aa5.5□□□□□ -1.53
CLIP1-214ENST00000540539 LORP23490 312 aaPredicted RBP5.49□□□□□ -1.53
CLIP1-214ENST00000540539 SSBP3-AS1Q7Z2R9 100 aa5.48□□□□□ -1.53
CLIP1-214ENST00000540539 DYNC2H1Q8NCM8 4307 aaKnown RBP5.48□□□□□ -1.53
CLIP1-214ENST00000540539 CDK2AP2O75956 126 aa5.48□□□□□ -1.53
CLIP1-214ENST00000540539 STARD9Q9P2P6 4700 aa5.47□□□□□ -1.53
CLIP1-214ENST00000540539 APLNQ9ULZ1 77 aa5.47□□□□□ -1.53
CLIP1-214ENST00000540539 KRTAP11-1Q8IUC1 163 aa5.46□□□□□ -1.54
CLIP1-214ENST00000540539 KRTAP15-1Q3LI76 137 aa5.46□□□□□ -1.54
CLIP1-214ENST00000540539 PLECQ15149 4684 aaKnown RBP5.45□□□□□ -1.54
CLIP1-214ENST00000540539 Q6ZSA8 131 aa5.45□□□□□ -1.54
CLIP1-214ENST00000540539 LY6G6CO95867 125 aa5.44□□□□□ -1.54
CLIP1-214ENST00000540539 PSORS1C2Q9UIG4 136 aa5.44□□□□□ -1.54
CLIP1-214ENST00000540539 LYSTQ99698 3801 aa5.44□□□□□ -1.54
CLIP1-214ENST00000540539 LINC01556Q5JQF7 62 aa5.42□□□□□ -1.54
CLIP1-214ENST00000540539 UBE2DNLQ8IWF7 75 aa5.42□□□□□ -1.54
CLIP1-214ENST00000540539 PANO1I0J062 215 aa5.41□□□□□ -1.54
CLIP1-214ENST00000540539 IGLV9-49A0A0B4J1Y8 123 aa5.4□□□□□ -1.54
CLIP1-214ENST00000540539 LUZP6Q538Z0 58 aa5.4□□□□□ -1.55
CLIP1-214ENST00000540539 IGKV2-30P06310 120 aa5.39□□□□□ -1.55
CLIP1-214ENST00000540539 CHTF8P0CG12 524 aa5.38□□□□□ -1.55
CLIP1-214ENST00000540539 VPS13DQ5THJ4 4388 aa5.38□□□□□ -1.55
CLIP1-214ENST00000540539 DNAH1Q9P2D7 4330 aa5.37□□□□□ -1.55
CLIP1-214ENST00000540539 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
CLIP1-214ENST00000540539 SEC61BP60468 96 aaKnown RBP5.37□□□□□ -1.55
CLIP1-214ENST00000540539 KRTAP4-6Q9BYQ5 205 aa5.37□□□□□ -1.55
CLIP1-214ENST00000540539 SPINK1P00995 79 aa5.36□□□□□ -1.55
CLIP1-214ENST00000540539 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
CLIP1-214ENST00000540539 TPRXLQ17RH7 258 aa5.34□□□□□ -1.55
CLIP1-214ENST00000540539 KRTAP1-5Q9BYS1 174 aa5.34□□□□□ -1.55
CLIP1-214ENST00000540539 NBDYA0A0U1RRE5 68 aa5.33□□□□□ -1.56
CLIP1-214ENST00000540539 SPINK6Q6UWN8 80 aa5.33□□□□□ -1.56
CLIP1-214ENST00000540539 KMT2AQ03164 3969 aa5.33□□□□□ -1.56
CLIP1-214ENST00000540539 A0A1B0GU33 70 aa5.31□□□□□ -1.56
CLIP1-214ENST00000540539 IGKV2D-30A0A075B6S6 120 aa5.31□□□□□ -1.56
CLIP1-214ENST00000540539 TYMSOSQ8TAI1 123 aa5.31□□□□□ -1.56
CLIP1-214ENST00000540539 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.3□□□□□ -1.56
CLIP1-214ENST00000540539 K7ERS5 55 aa5.29□□□□□ -1.56
CLIP1-214ENST00000540539 KRTAP13-1Q8IUC0 172 aa5.29□□□□□ -1.56
CLIP1-214ENST00000540539 DNAH6Q9C0G6 4158 aa5.29□□□□□ -1.56
CLIP1-214ENST00000540539 DNAH10Q8IVF4 4471 aa5.28□□□□□ -1.56
CLIP1-214ENST00000540539 H1FX-AS1Q4G0G2 97 aa5.27□□□□□ -1.57
CLIP1-214ENST00000540539 SACSQ9NZJ4 4579 aa5.27□□□□□ -1.57
CLIP1-214ENST00000540539 HYDINQ4G0P3 5121 aa5.26□□□□□ -1.57
CLIP1-214ENST00000540539 C14orf177Q52M58 125 aa5.26□□□□□ -1.57
CLIP1-214ENST00000540539 Q6ZRN7 208 aaPredicted RBP5.26□□□□□ -1.57
CLIP1-214ENST00000540539 C10orf95Q9H7T3 257 aa5.25□□□□□ -1.57
CLIP1-214ENST00000540539 KMT2CQ8NEZ4 4911 aaKnown RBP5.25□□□□□ -1.57
CLIP1-214ENST00000540539 DNAH2Q9P225 4427 aa5.25□□□□□ -1.57
CLIP1-214ENST00000540539 Q8N1X5 172 aa5.22□□□□□ -1.57
CLIP1-214ENST00000540539 ANAPC11Q9NYG5 84 aa5.22□□□□□ -1.57
CLIP1-214ENST00000540539 FRAS1Q86XX4 4008 aa5.21□□□□□ -1.58
CLIP1-214ENST00000540539 RYR2Q92736 4967 aa5.2□□□□□ -1.58
CLIP1-214ENST00000540539 DNAH17Q9UFH2 4485 aa5.19□□□□□ -1.58
CLIP1-214ENST00000540539 FAT2Q9NYQ8 4349 aa5.16□□□□□ -1.58
CLIP1-214ENST00000540539 HECTD4Q9Y4D8 3996 aa5.15□□□□□ -1.58
CLIP1-214ENST00000540539 COX6B2Q6YFQ2 88 aa5.14□□□□□ -1.59
CLIP1-214ENST00000540539 CIRBP-AS1Q8TBR5 109 aa5.14□□□□□ -1.59
CLIP1-214ENST00000540539 RYR3Q15413 4870 aa5.14□□□□□ -1.59
CLIP1-214ENST00000540539 DNAH11Q96DT5 4516 aa5.13□□□□□ -1.59
CLIP1-214ENST00000540539 KRTAP10-2P60368 255 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms