RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 CFAP126Q5VTH2 177 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 KRTAP13-1Q8IUC0 172 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 CNFNQ9BYD5 112 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 PRO0255Q9UI72 69 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 APLNQ9ULZ1 77 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 CSMD3Q7Z407 3707 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 KMT2CQ8NEZ4 4911 aaKnown RBP2.71□□□□□ -1.98
PCF11-202ENST00000528336 TRGV4A0A0C4DH28 118 aa2.71□□□□□ -1.98
PCF11-202ENST00000528336 V9GYV3 84 aa2.71□□□□□ -1.98
PCF11-202ENST00000528336 DNAH1Q9P2D7 4330 aa2.71□□□□□ -1.98
PCF11-202ENST00000528336 LCE6AA0A183 80 aa2.7□□□□□ -1.98
PCF11-202ENST00000528336 SMIM27A0A1W2PRY6 76 aa2.7□□□□□ -1.98
PCF11-202ENST00000528336 PLECQ15149 4684 aaKnown RBP2.7□□□□□ -1.98
PCF11-202ENST00000528336 PMCHL1Q16048 86 aa2.7□□□□□ -1.98
PCF11-202ENST00000528336 SPATA45Q537H7 98 aa2.7□□□□□ -1.98
PCF11-202ENST00000528336 FAM74A4Q5TZK3 123 aa2.7□□□□□ -1.98
PCF11-202ENST00000528336 LINC00643Q86TS7 51 aa2.7□□□□□ -1.98
PCF11-202ENST00000528336 ALMS1Q8TCU4 4167 aa2.7□□□□□ -1.98
PCF11-202ENST00000528336 RYR2Q92736 4967 aa2.69□□□□□ -1.98
PCF11-202ENST00000528336 A0A096LPF7 62 aa2.69□□□□□ -1.98
PCF11-202ENST00000528336 A0A1B0GUT8 65 aa2.69□□□□□ -1.98
PCF11-202ENST00000528336 CCL18P55774 89 aa2.69□□□□□ -1.98
PCF11-202ENST00000528336 C20orf197Q8N268 126 aa2.69□□□□□ -1.98
PCF11-202ENST00000528336 VPS13DQ5THJ4 4388 aa2.69□□□□□ -1.98
PCF11-202ENST00000528336 SACSQ9NZJ4 4579 aa2.69□□□□□ -1.98
PCF11-202ENST00000528336 A0A087WWC5 75 aa2.68□□□□□ -1.98
PCF11-202ENST00000528336 C7orf77A4D0Y5 90 aa2.68□□□□□ -1.98
PCF11-202ENST00000528336 M0QY20 66 aa2.68□□□□□ -1.98
PCF11-202ENST00000528336 INE1O15225 51 aa2.68□□□□□ -1.98
PCF11-202ENST00000528336 LY6G6CO95867 125 aa2.68□□□□□ -1.98
PCF11-202ENST00000528336 MGPP08493 103 aa2.68□□□□□ -1.98
PCF11-202ENST00000528336 UBE2DNLQ8IWF7 75 aa2.68□□□□□ -1.98
PCF11-202ENST00000528336 IGKV3D-7A0A0C4DH55 119 aa2.67□□□□□ -1.98
PCF11-202ENST00000528336 IGKV3OR2-268A0A0C4DH90 116 aa2.67□□□□□ -1.98
PCF11-202ENST00000528336 TMEM170BQ5T4T1 132 aa2.67□□□□□ -1.98
PCF11-202ENST00000528336 RYR3Q15413 4870 aa2.67□□□□□ -1.98
PCF11-202ENST00000528336 TRBV6-5A0A0K0K1A5 114 aa2.66□□□□□ -1.98
PCF11-202ENST00000528336 M0R2N4 97 aa2.66□□□□□ -1.98
PCF11-202ENST00000528336 PPP1R17O96001 155 aa2.66□□□□□ -1.98
PCF11-202ENST00000528336 LELP1Q5T871 98 aa2.66□□□□□ -1.98
PCF11-202ENST00000528336 AMELXQ99217 191 aa2.66□□□□□ -1.98
PCF11-202ENST00000528336 HYDINQ4G0P3 5121 aa2.65□□□□□ -1.98
PCF11-202ENST00000528336 DNAH6Q9C0G6 4158 aa2.65□□□□□ -1.98
PCF11-202ENST00000528336 NBDYA0A0U1RRE5 68 aa2.65□□□□□ -1.99
PCF11-202ENST00000528336 LINC01556Q5JQF7 62 aa2.65□□□□□ -1.99
PCF11-202ENST00000528336 SFTA2Q6UW10 78 aa2.65□□□□□ -1.99
PCF11-202ENST00000528336 WFDC10BQ8IUB3 73 aa2.65□□□□□ -1.99
PCF11-202ENST00000528336 COX7B2Q8TF08 81 aa2.65□□□□□ -1.99
PCF11-202ENST00000528336 RPL39LQ96EH5 51 aaKnown RBP2.65□□□□□ -1.99
PCF11-202ENST00000528336 LYSTQ99698 3801 aa2.65□□□□□ -1.99
PCF11-202ENST00000528336 D6R8Y8 96 aa2.64□□□□□ -1.99
PCF11-202ENST00000528336 I3L3M4 83 aa2.64□□□□□ -1.99
PCF11-202ENST00000528336 KMT2AQ03164 3969 aa2.63□□□□□ -1.99
PCF11-202ENST00000528336 F8WEM9 126 aa2.63□□□□□ -1.99
PCF11-202ENST00000528336 POLR2KP53803 58 aaKnown RBP2.63□□□□□ -1.99
PCF11-202ENST00000528336 SPAG11BQ08648 103 aa2.63□□□□□ -1.99
PCF11-202ENST00000528336 KRTAP5-7Q6L8G8 165 aa2.63□□□□□ -1.99
PCF11-202ENST00000528336 SPAG11AQ6PDA7 123 aa2.63□□□□□ -1.99
PCF11-202ENST00000528336 Q6ZRN7 208 aaPredicted RBP2.63□□□□□ -1.99
PCF11-202ENST00000528336 LOC110117498A0A087WWA1 95 aa2.62□□□□□ -1.99
PCF11-202ENST00000528336 K7EMI3 77 aa2.62□□□□□ -1.99
PCF11-202ENST00000528336 FCER1GP30273 86 aa2.62□□□□□ -1.99
PCF11-202ENST00000528336 RPL37AP61513 92 aaKnown RBP2.62□□□□□ -1.99
PCF11-202ENST00000528336 COA5Q86WW8 74 aa2.62□□□□□ -1.99
PCF11-202ENST00000528336 SMIM2Q9BVW6 85 aa2.62□□□□□ -1.99
PCF11-202ENST00000528336 DNAH2Q9P225 4427 aa2.61□□□□□ -1.99
PCF11-202ENST00000528336 A0A087WTM6 91 aa2.61□□□□□ -1.99
PCF11-202ENST00000528336 ZNF815PA8K554 130 aa2.61□□□□□ -1.99
PCF11-202ENST00000528336 SMIM13P0DJ93 91 aa2.61□□□□□ -1.99
PCF11-202ENST00000528336 DEFB104AQ8WTQ1 72 aa2.61□□□□□ -1.99
PCF11-202ENST00000528336 DNAH10Q8IVF4 4471 aa2.6□□□□□ -1.99
PCF11-202ENST00000528336 DNAH17Q9UFH2 4485 aa2.6□□□□□ -1.99
PCF11-202ENST00000528336 FAT2Q9NYQ8 4349 aa2.6□□□□□ -1.99
PCF11-202ENST00000528336 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.6□□□□□ -1.99
PCF11-202ENST00000528336 IGKV2-29A2NJV5 120 aaPredicted RBP2.6□□□□□ -1.99
PCF11-202ENST00000528336 LINC01546A6NGU7 62 aa2.6□□□□□ -1.99
PCF11-202ENST00000528336 ANGP03950 147 aaKnown RBP2.6□□□□□ -1.99
PCF11-202ENST00000528336 KRTAP12-3P60328 96 aa2.6□□□□□ -1.99
PCF11-202ENST00000528336 ZNF625Q96I27 306 aaPredicted RBP2.6□□□□□ -1.99
PCF11-202ENST00000528336 MUC19Q7Z5P9 8384 aa2.59□□□□□ -1.99
PCF11-202ENST00000528336 MYMXA0A1B0GTQ4 84 aa2.59□□□□□ -1.99
PCF11-202ENST00000528336 IFI27P40305 119 aaPredicted RBP2.59□□□□□ -1.99
PCF11-202ENST00000528336 RPL39P62891 51 aaKnown RBP2.59□□□□□ -1.99
PCF11-202ENST00000528336 ENHOQ6UWT2 76 aa2.59□□□□□ -1.99
PCF11-202ENST00000528336 UBE2D4Q9Y2X8 147 aa2.59□□□□□ -1.99
PCF11-202ENST00000528336 LINC01549A6NIU2 74 aa2.58□□□□□ -2
PCF11-202ENST00000528336 IGIPA6NJ69 53 aa2.58□□□□□ -2
PCF11-202ENST00000528336 CLPSL2Q6UWE3 100 aa2.58□□□□□ -2
PCF11-202ENST00000528336 LINC01558Q9Y6Z2 57 aa2.58□□□□□ -2
PCF11-202ENST00000528336 FRAS1Q86XX4 4008 aa2.58□□□□□ -2
PCF11-202ENST00000528336 EPPK1P58107 5090 aaKnown RBP2.57□□□□□ -2
PCF11-202ENST00000528336 HECTD4Q9Y4D8 3996 aa2.57□□□□□ -2
PCF11-202ENST00000528336 LINC00959A0A1B0GUT2 108 aa2.57□□□□□ -2
PCF11-202ENST00000528336 PKHD1P08F94 4074 aa2.57□□□□□ -2
PCF11-202ENST00000528336 F8VRH5 84 aa2.56□□□□□ -2
PCF11-202ENST00000528336 DNAL4O96015 105 aa2.56□□□□□ -2
PCF11-202ENST00000528336 BAGE3Q86Y29 109 aa2.56□□□□□ -2
PCF11-202ENST00000528336 DNAH11Q96DT5 4516 aa2.56□□□□□ -2
PCF11-202ENST00000528336 PKD1P98161 4303 aa2.55□□□□□ -2
PCF11-202ENST00000528336 GVQW2A0A096LPI5 108 aaPredicted RBP2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms