RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FLNAP21333 2647 aaKnown RBP3.54□□□□□ -1.84
CD44-225ENST00000527326 KRTAP16-1A8MUX0 517 aa3.53□□□□□ -1.84
CD44-225ENST00000527326 IGKV2-30P06310 120 aa3.53□□□□□ -1.84
CD44-225ENST00000527326 P0C880 135 aa3.53□□□□□ -1.84
CD44-225ENST00000527326 DMAC1Q96GE9 116 aa3.53□□□□□ -1.84
CD44-225ENST00000527326 A0A096LPF7 62 aa3.52□□□□□ -1.85
CD44-225ENST00000527326 FAM168BA1KXE4 195 aa3.52□□□□□ -1.85
CD44-225ENST00000527326 TLX1NBP0CAT3 122 aa3.52□□□□□ -1.85
CD44-225ENST00000527326 RYR3Q15413 4870 aa3.52□□□□□ -1.85
CD44-225ENST00000527326 NSD1Q96L73 2696 aaPredicted RBP3.51□□□□□ -1.85
CD44-225ENST00000527326 SMR3AQ99954 134 aa3.51□□□□□ -1.85
CD44-225ENST00000527326 C8orf17Q9NRJ1 99 aa3.51□□□□□ -1.85
CD44-225ENST00000527326 A8MUU9 505 aa3.5□□□□□ -1.85
CD44-225ENST00000527326 IGLV7-43P04211 117 aa3.5□□□□□ -1.85
CD44-225ENST00000527326 C15orf56Q8N910 161 aa3.5□□□□□ -1.85
CD44-225ENST00000527326 ROS1P08922 2347 aa3.49□□□□□ -1.85
CD44-225ENST00000527326 SPRR1BP22528 89 aa3.49□□□□□ -1.85
CD44-225ENST00000527326 MRPL34Q9BQ48 92 aaKnown RBP3.49□□□□□ -1.85
CD44-225ENST00000527326 KRTAP1-5Q9BYS1 174 aa3.49□□□□□ -1.85
CD44-225ENST00000527326 NUPR2A6NF83 97 aa3.48□□□□□ -1.85
CD44-225ENST00000527326 KRTAP26-1Q6PEX3 210 aa3.48□□□□□ -1.85
CD44-225ENST00000527326 TGP01266 2768 aa3.47□□□□□ -1.85
CD44-225ENST00000527326 MXRA5Q9NR99 2828 aa3.46□□□□□ -1.86
CD44-225ENST00000527326 A0A0G2JQZ4 141 aa3.46□□□□□ -1.86
CD44-225ENST00000527326 A0A1B0GVX0 72 aa3.46□□□□□ -1.86
CD44-225ENST00000527326 A0A1W2PNN7 141 aa3.46□□□□□ -1.86
CD44-225ENST00000527326 DNAH10OSP0CZ25 163 aa3.46□□□□□ -1.86
CD44-225ENST00000527326 C20orf166-AS1Q96NR2 134 aa3.46□□□□□ -1.86
CD44-225ENST00000527326 SVEP1Q4LDE5 3571 aa3.46□□□□□ -1.86
CD44-225ENST00000527326 KMT2CQ8NEZ4 4911 aaKnown RBP3.46□□□□□ -1.86
CD44-225ENST00000527326 SONP18583 2426 aaKnown RBP3.45□□□□□ -1.86
CD44-225ENST00000527326 TLN2Q9Y4G6 2542 aa3.45□□□□□ -1.86
CD44-225ENST00000527326 A0A1W2PPR1 153 aa3.45□□□□□ -1.86
CD44-225ENST00000527326 CDK2AP2O75956 126 aa3.45□□□□□ -1.86
CD44-225ENST00000527326 PKD1L1Q8TDX9 2849 aa3.45□□□□□ -1.86
CD44-225ENST00000527326 K7ERS5 55 aa3.44□□□□□ -1.86
CD44-225ENST00000527326 CASC10Q5T4H9 136 aa3.44□□□□□ -1.86
CD44-225ENST00000527326 LINC00304Q8N9R0 145 aa3.44□□□□□ -1.86
CD44-225ENST00000527326 PRKDCP78527 4128 aaKnown RBP3.44□□□□□ -1.86
CD44-225ENST00000527326 NBEAL2Q6ZNJ1 2754 aa3.44□□□□□ -1.86
CD44-225ENST00000527326 NOTCH1P46531 2555 aa3.43□□□□□ -1.86
CD44-225ENST00000527326 LY6G6CO95867 125 aa3.43□□□□□ -1.86
CD44-225ENST00000527326 KRTAP13-3Q3SY46 172 aa3.43□□□□□ -1.86
CD44-225ENST00000527326 IGLV9-49A0A0B4J1Y8 123 aa3.42□□□□□ -1.86
CD44-225ENST00000527326 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
CD44-225ENST00000527326 KRTAP24-1Q3LI83 254 aa3.42□□□□□ -1.86
CD44-225ENST00000527326 Q5W150 140 aa3.42□□□□□ -1.86
CD44-225ENST00000527326 Q96NJ1 140 aa3.42□□□□□ -1.86
CD44-225ENST00000527326 EPPK1P58107 5090 aaKnown RBP3.42□□□□□ -1.86
CD44-225ENST00000527326 HRNRQ86YZ3 2850 aaPredicted RBP3.42□□□□□ -1.86
CD44-225ENST00000527326 CMYA5Q8N3K9 4069 aa3.42□□□□□ -1.86
CD44-225ENST00000527326 MEGF8Q7Z7M0 2845 aa3.42□□□□□ -1.86
CD44-225ENST00000527326 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.42□□□□□ -1.86
CD44-225ENST00000527326 ZANQ9Y493 2812 aa3.41□□□□□ -1.86
CD44-225ENST00000527326 SPINT4Q6UDR6 99 aa3.41□□□□□ -1.86
CD44-225ENST00000527326 BIRC6Q9NR09 4857 aa3.41□□□□□ -1.86
CD44-225ENST00000527326 H3BNG1 76 aa3.4□□□□□ -1.87
CD44-225ENST00000527326 CHTF8P0CG12 524 aa3.4□□□□□ -1.87
CD44-225ENST00000527326 MAPK1IP1LQ8NDC0 245 aa3.4□□□□□ -1.87
CD44-225ENST00000527326 A0A087WTM6 91 aa3.39□□□□□ -1.87
CD44-225ENST00000527326 SPART-AS1P0CW21 52 aa3.39□□□□□ -1.87
CD44-225ENST00000527326 LUZP6Q538Z0 58 aa3.39□□□□□ -1.87
CD44-225ENST00000527326 KRTAP7-1Q8IUC3 87 aa3.39□□□□□ -1.87
CD44-225ENST00000527326 ANAPC11Q9NYG5 84 aa3.39□□□□□ -1.87
CD44-225ENST00000527326 PRLHP81277 87 aa3.38□□□□□ -1.87
CD44-225ENST00000527326 KRTAP11-1Q8IUC1 163 aa3.38□□□□□ -1.87
CD44-225ENST00000527326 PANO1I0J062 215 aa3.37□□□□□ -1.87
CD44-225ENST00000527326 KRTAP10-7P60409 375 aaPredicted RBP3.37□□□□□ -1.87
CD44-225ENST00000527326 LINC01556Q5JQF7 62 aa3.37□□□□□ -1.87
CD44-225ENST00000527326 TRRAPQ9Y4A5 3859 aa3.37□□□□□ -1.87
CD44-225ENST00000527326 MGAM2Q2M2H8 2515 aa3.36□□□□□ -1.87
CD44-225ENST00000527326 IGKV2D-30A0A075B6S6 120 aa3.36□□□□□ -1.87
CD44-225ENST00000527326 HTN3P15516 51 aa3.36□□□□□ -1.87
CD44-225ENST00000527326 SSBP3-AS1Q7Z2R9 100 aa3.36□□□□□ -1.87
CD44-225ENST00000527326 KRTAP2-2Q9BYT5 123 aa3.36□□□□□ -1.87
CD44-225ENST00000527326 H0YAA0 97 aa3.35□□□□□ -1.87
CD44-225ENST00000527326 K7EIL1 84 aa3.35□□□□□ -1.87
CD44-225ENST00000527326 ALMS1Q8TCU4 4167 aa3.35□□□□□ -1.87
CD44-225ENST00000527326 PSORS1C2Q9UIG4 136 aa3.33□□□□□ -1.88
CD44-225ENST00000527326 HYDINQ4G0P3 5121 aa3.32□□□□□ -1.88
CD44-225ENST00000527326 KRTAP10-6P60371 365 aaPredicted RBP3.32□□□□□ -1.88
CD44-225ENST00000527326 Q6ZSA8 131 aa3.32□□□□□ -1.88
CD44-225ENST00000527326 TENM1Q9UKZ4 2725 aa3.32□□□□□ -1.88
CD44-225ENST00000527326 DEFB4AO15263 64 aa3.31□□□□□ -1.88
CD44-225ENST00000527326 DEFB135Q30KP9 77 aa3.31□□□□□ -1.88
CD44-225ENST00000527326 RYR2Q92736 4967 aa3.31□□□□□ -1.88
CD44-225ENST00000527326 A0A1B0GU33 70 aa3.3□□□□□ -1.88
CD44-225ENST00000527326 H1FX-AS1Q4G0G2 97 aa3.3□□□□□ -1.88
CD44-225ENST00000527326 RYR1P21817 5038 aa3.29□□□□□ -1.88
CD44-225ENST00000527326 A0A096LNI7 61 aa3.29□□□□□ -1.88
CD44-225ENST00000527326 NOTCH3Q9UM47 2321 aa3.28□□□□□ -1.88
CD44-225ENST00000527326 DYNC2H1Q8NCM8 4307 aaKnown RBP3.28□□□□□ -1.88
CD44-225ENST00000527326 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
CD44-225ENST00000527326 CRIPTQ9P021 101 aa3.27□□□□□ -1.89
CD44-225ENST00000527326 PCLOQ9Y6V0 5065 aa3.27□□□□□ -1.89
CD44-225ENST00000527326 SACSQ9NZJ4 4579 aa3.26□□□□□ -1.89
CD44-225ENST00000527326 NBDYA0A0U1RRE5 68 aa3.26□□□□□ -1.89
CD44-225ENST00000527326 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
CD44-225ENST00000527326 KRTAP13-1Q8IUC0 172 aa3.25□□□□□ -1.89
CD44-225ENST00000527326 TPRXLQ17RH7 258 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms