RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 H3BQ85 93 aa4.12□□□□□ -1.75
VIM-202ENST00000421459 BAALC-AS2P0C853 105 aa4.12□□□□□ -1.75
VIM-202ENST00000421459 MTURNQ8N3F0 131 aa4.12□□□□□ -1.75
VIM-202ENST00000421459 ORMDL1Q9P0S3 153 aa4.12□□□□□ -1.75
VIM-202ENST00000421459 MACF1Q9UPN3 7388 aaKnown RBP4.12□□□□□ -1.75
VIM-202ENST00000421459 GHRHP01286 108 aa4.11□□□□□ -1.75
VIM-202ENST00000421459 MT2AP02795 61 aa4.11□□□□□ -1.75
VIM-202ENST00000421459 PPDPFLQ8WWR9 84 aa4.11□□□□□ -1.75
VIM-202ENST00000421459 TMEM256-PLSCR3K7ERE1 68 aa4.1□□□□□ -1.75
VIM-202ENST00000421459 Q6JHZ5 121 aa4.1□□□□□ -1.75
VIM-202ENST00000421459 TEN1Q86WV5 123 aa4.1□□□□□ -1.75
VIM-202ENST00000421459 KRTAP19-1Q8IUB9 90 aa4.1□□□□□ -1.75
VIM-202ENST00000421459 KRTAP16-1A8MUX0 517 aa4.09□□□□□ -1.75
VIM-202ENST00000421459 MT1FP04733 61 aa4.09□□□□□ -1.75
VIM-202ENST00000421459 ETDBQ3ZM63 59 aa4.09□□□□□ -1.75
VIM-202ENST00000421459 C20orf166-AS1Q96NR2 134 aa4.08□□□□□ -1.76
VIM-202ENST00000421459 A8MUU9 505 aa4.07□□□□□ -1.76
VIM-202ENST00000421459 JMJD7-PLA2G4BH0Y9G9 81 aa4.06□□□□□ -1.76
VIM-202ENST00000421459 NDUFV3P56181 108 aaKnown RBP4.06□□□□□ -1.76
VIM-202ENST00000421459 DSCR10P59022 87 aa4.06□□□□□ -1.76
VIM-202ENST00000421459 KRTAP9-3Q9BYQ3 159 aa4.06□□□□□ -1.76
VIM-202ENST00000421459 KRTAP10-10P60014 251 aa4.05□□□□□ -1.76
VIM-202ENST00000421459 LOC110117498A0A087WWA1 95 aa4.04□□□□□ -1.76
VIM-202ENST00000421459 TRBV7-4A0A0J9YYF1 115 aa4.03□□□□□ -1.76
VIM-202ENST00000421459 FAM236DA0A1B0GTK5 79 aa4.03□□□□□ -1.76
VIM-202ENST00000421459 FAM236CP0DP71 79 aa4.03□□□□□ -1.76
VIM-202ENST00000421459 RBM3P98179 157 aaKnown RBP4.03□□□□□ -1.76
VIM-202ENST00000421459 A0A087WSZ3 146 aa4.02□□□□□ -1.77
VIM-202ENST00000421459 PDE6GP18545 87 aa4.02□□□□□ -1.77
VIM-202ENST00000421459 C21orf62-AS1Q17RA5 79 aa4.02□□□□□ -1.77
VIM-202ENST00000421459 C14orf132Q9NPU4 83 aa4.02□□□□□ -1.77
VIM-202ENST00000421459 FAM240AA0A1B0GVK7 77 aa4.01□□□□□ -1.77
VIM-202ENST00000421459 J3QR89 54 aa4.01□□□□□ -1.77
VIM-202ENST00000421459 K7ERU9 68 aa4.01□□□□□ -1.77
VIM-202ENST00000421459 HRES1P13985 223 aa4.01□□□□□ -1.77
VIM-202ENST00000421459 Q6ZQT0 140 aa4.01□□□□□ -1.77
VIM-202ENST00000421459 NOTCH2NLQ7Z3S9 236 aa4.01□□□□□ -1.77
VIM-202ENST00000421459 DSCR8Q96T75 97 aa4.01□□□□□ -1.77
VIM-202ENST00000421459 CCKP06307 115 aa4□□□□□ -1.77
VIM-202ENST00000421459 LCE3BQ5TA77 95 aa4□□□□□ -1.77
VIM-202ENST00000421459 MPLKIPQ8TAP9 179 aa4□□□□□ -1.77
VIM-202ENST00000421459 SS18L2Q9UHA2 77 aa4□□□□□ -1.77
VIM-202ENST00000421459 A0A1B0GV72 72 aa3.99□□□□□ -1.77
VIM-202ENST00000421459 SIGMAR1Q99720 223 aa3.99□□□□□ -1.77
VIM-202ENST00000421459 KRTAP4-8A0A0G2JLE6 195 aa3.98□□□□□ -1.77
VIM-202ENST00000421459 A0A1B0GW54 56 aa3.98□□□□□ -1.77
VIM-202ENST00000421459 A0A1W2PNM2 257 aa3.98□□□□□ -1.77
VIM-202ENST00000421459 ACYP1P07311 99 aa3.98□□□□□ -1.77
VIM-202ENST00000421459 LINC00313P59037 77 aa3.98□□□□□ -1.77
VIM-202ENST00000421459 DEFB116Q30KQ4 102 aa3.98□□□□□ -1.77
VIM-202ENST00000421459 IGKV4-1P06312 121 aa3.96□□□□□ -1.78
VIM-202ENST00000421459 RBM12B-AS1Q9P1G2 102 aa3.96□□□□□ -1.78
VIM-202ENST00000421459 KRTAP19-6Q3LI70 58 aa3.95□□□□□ -1.78
VIM-202ENST00000421459 KRTAP9-9Q9BYP9 154 aa3.95□□□□□ -1.78
VIM-202ENST00000421459 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
VIM-202ENST00000421459 LINC00846Q9NV44 126 aa3.94□□□□□ -1.78
VIM-202ENST00000421459 IGHV6-1A0A0B4J1U7 121 aa3.93□□□□□ -1.78
VIM-202ENST00000421459 VPS25Q9BRG1 176 aa3.93□□□□□ -1.78
VIM-202ENST00000421459 KRTAP4-12Q9BQ66 201 aa3.91□□□□□ -1.78
VIM-202ENST00000421459 LINC00472Q9H8W2 130 aa3.91□□□□□ -1.78
VIM-202ENST00000421459 Q6ZVQ6 151 aa3.9□□□□□ -1.79
VIM-202ENST00000421459 LINC00643Q86TS7 51 aa3.9□□□□□ -1.79
VIM-202ENST00000421459 UBL5Q9BZL1 73 aa3.9□□□□□ -1.79
VIM-202ENST00000421459 MUC12Q9UKN1 5478 aa3.89□□□□□ -1.79
VIM-202ENST00000421459 ATP5EP2Q5VTU8 51 aa3.89□□□□□ -1.79
VIM-202ENST00000421459 Q8N9P0 234 aaPredicted RBP3.89□□□□□ -1.79
VIM-202ENST00000421459 SPINK7P58062 85 aa3.88□□□□□ -1.79
VIM-202ENST00000421459 NREPQ16612 68 aa3.88□□□□□ -1.79
VIM-202ENST00000421459 NEBP20929 6669 aa3.88□□□□□ -1.79
VIM-202ENST00000421459 CXCL6P80162 114 aa3.87□□□□□ -1.79
VIM-202ENST00000421459 KRTAP6-3Q3LI67 103 aa3.87□□□□□ -1.79
VIM-202ENST00000421459 KRTAP4-7Q9BYR0 210 aa3.87□□□□□ -1.79
VIM-202ENST00000421459 ZCCHC13Q8WW36 166 aaKnown RBP3.86□□□□□ -1.79
VIM-202ENST00000421459 A0A1B0GVX0 72 aa3.85□□□□□ -1.79
VIM-202ENST00000421459 MT-ATP8P03928 68 aa3.85□□□□□ -1.79
VIM-202ENST00000421459 A8MWP4 228 aa3.84□□□□□ -1.79
VIM-202ENST00000421459 J3KT08 172 aa3.84□□□□□ -1.79
VIM-202ENST00000421459 BPY2O14599 106 aa3.84□□□□□ -1.79
VIM-202ENST00000421459 IMUPQ9GZP8 106 aa3.84□□□□□ -1.79
VIM-202ENST00000421459 IGKV3D-7A0A0C4DH55 119 aa3.83□□□□□ -1.8
VIM-202ENST00000421459 C8orf87E5RJ46 101 aa3.83□□□□□ -1.8
VIM-202ENST00000421459 WFDC13Q8IUB5 93 aa3.83□□□□□ -1.8
VIM-202ENST00000421459 K7EQZ3 153 aa3.79□□□□□ -1.8
VIM-202ENST00000421459 PRR15Q8IV56 129 aa3.79□□□□□ -1.8
VIM-202ENST00000421459 Q8N9L7 120 aa3.79□□□□□ -1.8
VIM-202ENST00000421459 NDUFB1O75438 58 aa3.78□□□□□ -1.8
VIM-202ENST00000421459 HIST1H4AP62805 103 aaKnown RBP3.78□□□□□ -1.8
VIM-202ENST00000421459 A0A087WVE0 104 aa3.77□□□□□ -1.81
VIM-202ENST00000421459 SCGB1A1P11684 91 aa3.77□□□□□ -1.81
VIM-202ENST00000421459 C8orf17Q9NRJ1 99 aa3.77□□□□□ -1.81
VIM-202ENST00000421459 MDN1Q9NU22 5596 aa3.77□□□□□ -1.81
VIM-202ENST00000421459 LCE1DQ5T752 114 aa3.76□□□□□ -1.81
VIM-202ENST00000421459 MMP24-AS1A0A0U1RRL7 71 aa3.75□□□□□ -1.81
VIM-202ENST00000421459 HCG22E2RYF7 251 aa3.75□□□□□ -1.81
VIM-202ENST00000421459 SVIPQ8NHG7 77 aa3.75□□□□□ -1.81
VIM-202ENST00000421459 FAM236AA0A1B0GUQ0 79 aa3.74□□□□□ -1.81
VIM-202ENST00000421459 FAM236BA0A1B0GV22 79 aa3.74□□□□□ -1.81
VIM-202ENST00000421459 H1FX-AS1Q4G0G2 97 aa3.74□□□□□ -1.81
VIM-202ENST00000421459 CASC2Q6XLA1 102 aa3.72□□□□□ -1.81
VIM-202ENST00000421459 TMEM254Q8TBM7 123 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms