RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 DNAH2Q9P225 4427 aa9.81□□□□□ -0.84
CLN3-251ENST00000636853 FBN3Q75N90 2809 aa9.8□□□□□ -0.84
CLN3-251ENST00000636853 PKIGQ9Y2B9 76 aa9.8□□□□□ -0.84
CLN3-251ENST00000636853 SMIM26A0A096LP01 95 aa9.79□□□□□ -0.84
CLN3-251ENST00000636853 HIGD2AQ9BW72 106 aa9.79□□□□□ -0.84
CLN3-251ENST00000636853 LINC00474Q9P2X8 69 aa9.79□□□□□ -0.84
CLN3-251ENST00000636853 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.78□□□□□ -0.84
CLN3-251ENST00000636853 LY6G6CO95867 125 aa9.77□□□□□ -0.85
CLN3-251ENST00000636853 TNP2Q05952 138 aa9.76□□□□□ -0.85
CLN3-251ENST00000636853 TGP01266 2768 aa9.76□□□□□ -0.85
CLN3-251ENST00000636853 HECTD4Q9Y4D8 3996 aa9.75□□□□□ -0.85
CLN3-251ENST00000636853 C3orf84H3BNL1 204 aa9.75□□□□□ -0.85
CLN3-251ENST00000636853 SMIM29Q86T20 159 aa9.75□□□□□ -0.85
CLN3-251ENST00000636853 SPACA4Q8TDM5 124 aa9.75□□□□□ -0.85
CLN3-251ENST00000636853 F8WEM9 126 aa9.74□□□□□ -0.85
CLN3-251ENST00000636853 RTL8CO15255 209 aa9.74□□□□□ -0.85
CLN3-251ENST00000636853 KRTAP21-3Q3LHN1 58 aa9.74□□□□□ -0.85
CLN3-251ENST00000636853 C1orf137Q5JT78 98 aa9.74□□□□□ -0.85
CLN3-251ENST00000636853 PRO0628Q9UI54 55 aa9.74□□□□□ -0.85
CLN3-251ENST00000636853 C1orf134Q5TEV5 83 aa9.73□□□□□ -0.85
CLN3-251ENST00000636853 SCXQ7RTU7 201 aa9.73□□□□□ -0.85
CLN3-251ENST00000636853 DNAH17Q9UFH2 4485 aa9.72□□□□□ -0.85
CLN3-251ENST00000636853 A0A1W2PNM2 257 aa9.72□□□□□ -0.85
CLN3-251ENST00000636853 SNURFQ9Y675 71 aa9.72□□□□□ -0.85
CLN3-251ENST00000636853 UBE2AP49459 152 aa9.7□□□□□ -0.86
CLN3-251ENST00000636853 NREPQ16612 68 aa9.7□□□□□ -0.86
CLN3-251ENST00000636853 FP248Q71RG6 208 aaPredicted RBP9.7□□□□□ -0.86
CLN3-251ENST00000636853 A0A0G2JQZ4 141 aa9.69□□□□□ -0.86
CLN3-251ENST00000636853 H0Y9J4 135 aa9.68□□□□□ -0.86
CLN3-251ENST00000636853 LINC00476Q8WZB0 136 aa9.68□□□□□ -0.86
CLN3-251ENST00000636853 BPY2O14599 106 aa9.68□□□□□ -0.86
CLN3-251ENST00000636853 TMEM254Q8TBM7 123 aa9.68□□□□□ -0.86
CLN3-251ENST00000636853 WWC2-AS2Q96NR7 200 aa9.68□□□□□ -0.86
CLN3-251ENST00000636853 SRRM2Q9UQ35 2752 aaKnown RBP9.68□□□□□ -0.86
CLN3-251ENST00000636853 Q8NBF4 154 aa9.67□□□□□ -0.86
CLN3-251ENST00000636853 IGLV5-52A0A0A0MRZ9 124 aa9.66□□□□□ -0.86
CLN3-251ENST00000636853 LINC00336Q6ZUF6 198 aa9.66□□□□□ -0.86
CLN3-251ENST00000636853 DNAH6Q9C0G6 4158 aa9.65□□□□□ -0.86
CLN3-251ENST00000636853 A0A1B0GW54 56 aa9.65□□□□□ -0.87
CLN3-251ENST00000636853 IGFL1Q6UW32 110 aa9.64□□□□□ -0.87
CLN3-251ENST00000636853 IGKV4-1P06312 121 aa9.63□□□□□ -0.87
CLN3-251ENST00000636853 KRTAP13-1Q8IUC0 172 aa9.63□□□□□ -0.87
CLN3-251ENST00000636853 SPRR4Q96PI1 79 aa9.63□□□□□ -0.87
CLN3-251ENST00000636853 OCR1Q9BZK8 76 aa9.63□□□□□ -0.87
CLN3-251ENST00000636853 A0A0U1RQV1 116 aa9.63□□□□□ -0.87
CLN3-251ENST00000636853 Q8N9L7 120 aa9.63□□□□□ -0.87
CLN3-251ENST00000636853 DNAH8Q96JB1 4490 aa9.61□□□□□ -0.87
CLN3-251ENST00000636853 SPRR1BP22528 89 aa9.6□□□□□ -0.87
CLN3-251ENST00000636853 PLAC8Q9NZF1 115 aa9.6□□□□□ -0.87
CLN3-251ENST00000636853 IGLV8-61A0A075B6I0 122 aa9.59□□□□□ -0.87
CLN3-251ENST00000636853 FRAS1Q86XX4 4008 aa9.59□□□□□ -0.87
CLN3-251ENST00000636853 ALMS1Q8TCU4 4167 aa9.58□□□□□ -0.88
CLN3-251ENST00000636853 PSORS1C2Q9UIG4 136 aa9.58□□□□□ -0.88
CLN3-251ENST00000636853 HYDINQ4G0P3 5121 aa9.56□□□□□ -0.88
CLN3-251ENST00000636853 KRTAP10-2P60368 255 aa9.56□□□□□ -0.88
CLN3-251ENST00000636853 LCE6AA0A183 80 aa9.56□□□□□ -0.88
CLN3-251ENST00000636853 DNAH11Q96DT5 4516 aa9.54□□□□□ -0.88
CLN3-251ENST00000636853 DNAH5Q8TE73 4624 aa9.54□□□□□ -0.88
CLN3-251ENST00000636853 A0A087WSZ3 146 aa9.53□□□□□ -0.88
CLN3-251ENST00000636853 FAM30AQ9NZY2 134 aa9.51□□□□□ -0.89
CLN3-251ENST00000636853 DSCR10P59022 87 aa9.49□□□□□ -0.89
CLN3-251ENST00000636853 DEFB116Q30KQ4 102 aa9.49□□□□□ -0.89
CLN3-251ENST00000636853 FAT2Q9NYQ8 4349 aa9.48□□□□□ -0.89
CLN3-251ENST00000636853 IGLV9-49A0A0B4J1Y8 123 aa9.48□□□□□ -0.89
CLN3-251ENST00000636853 ZNF861PO60384 105 aa9.48□□□□□ -0.89
CLN3-251ENST00000636853 FAM229BQ4G0N7 80 aa9.47□□□□□ -0.89
CLN3-251ENST00000636853 LINC00483Q53H64 154 aa9.46□□□□□ -0.9
CLN3-251ENST00000636853 CIRBP-AS1Q8TBR5 109 aa9.46□□□□□ -0.9
CLN3-251ENST00000636853 PKD1P98161 4303 aa9.46□□□□□ -0.9
CLN3-251ENST00000636853 K7EQZ3 153 aa9.45□□□□□ -0.9
CLN3-251ENST00000636853 ANAPC11Q9NYG5 84 aa9.45□□□□□ -0.9
CLN3-251ENST00000636853 ZCCHC13Q8WW36 166 aaKnown RBP9.44□□□□□ -0.9
CLN3-251ENST00000636853 ZNF706Q9Y5V0 76 aaPredicted RBP9.44□□□□□ -0.9
CLN3-251ENST00000636853 hDV103S1A0JD37 113 aa9.43□□□□□ -0.9
CLN3-251ENST00000636853 BRK1Q8WUW1 75 aa9.43□□□□□ -0.9
CLN3-251ENST00000636853 KRTAP10-1P60331 282 aa9.43□□□□□ -0.9
CLN3-251ENST00000636853 IGLV7-43P04211 117 aa9.42□□□□□ -0.9
CLN3-251ENST00000636853 RPL37AP61513 92 aaKnown RBP9.4□□□□□ -0.9
CLN3-251ENST00000636853 Q1T7F1 81 aa9.4□□□□□ -0.9
CLN3-251ENST00000636853 MPLKIPQ8TAP9 179 aa9.4□□□□□ -0.9
CLN3-251ENST00000636853 MOBPQ13875 183 aa9.39□□□□□ -0.91
CLN3-251ENST00000636853 Q6ZSA8 131 aa9.38□□□□□ -0.91
CLN3-251ENST00000636853 CYP4F30PQ9H0H9 118 aa9.38□□□□□ -0.91
CLN3-251ENST00000636853 SACSQ9NZJ4 4579 aa9.37□□□□□ -0.91
CLN3-251ENST00000636853 LINC00472Q9H8W2 130 aa9.36□□□□□ -0.91
CLN3-251ENST00000636853 C1orf195Q5TG92 126 aa9.36□□□□□ -0.91
CLN3-251ENST00000636853 LRP1BQ9NZR2 4599 aa9.34□□□□□ -0.91
CLN3-251ENST00000636853 HCG22E2RYF7 251 aa9.33□□□□□ -0.92
CLN3-251ENST00000636853 NDUFB1O75438 58 aa9.33□□□□□ -0.92
CLN3-251ENST00000636853 C1orf64Q8NEQ6 169 aa9.33□□□□□ -0.92
CLN3-251ENST00000636853 PRR15Q8IV56 129 aa9.33□□□□□ -0.92
CLN3-251ENST00000636853 WFDC13Q8IUB5 93 aa9.31□□□□□ -0.92
CLN3-251ENST00000636853 A8MWP4 228 aa9.29□□□□□ -0.92
CLN3-251ENST00000636853 Q96NJ1 140 aa9.28□□□□□ -0.92
CLN3-251ENST00000636853 V9GYY9 64 aa9.28□□□□□ -0.92
CLN3-251ENST00000636853 PKHD1P08F94 4074 aa9.27□□□□□ -0.93
CLN3-251ENST00000636853 VPS13BQ7Z7G8 4022 aa9.24□□□□□ -0.93
CLN3-251ENST00000636853 H3BPC8 53 aa9.24□□□□□ -0.93
CLN3-251ENST00000636853 KRTAP29-1A8MX34 341 aaPredicted RBP9.23□□□□□ -0.93
CLN3-251ENST00000636853 MP68P56378 58 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms