RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ATP5EP56381 51 aaPredicted RBP13.44□□□□□ -0.26
LIME1-210ENST00000621325 NDUFC1O43677 76 aa13.44□□□□□ -0.26
LIME1-210ENST00000621325 PRR15Q8IV56 129 aa13.44□□□□□ -0.26
LIME1-210ENST00000621325 C9orf163Q8N9P6 203 aa13.44□□□□□ -0.26
LIME1-210ENST00000621325 UBE2BP63146 152 aa13.42□□□□□ -0.26
LIME1-210ENST00000621325 HAMPP81172 84 aa13.41□□□□□ -0.26
LIME1-210ENST00000621325 KRTAP11-1Q8IUC1 163 aa13.41□□□□□ -0.26
LIME1-210ENST00000621325 KMT2AQ03164 3969 aa13.4□□□□□ -0.26
LIME1-210ENST00000621325 PHF5AQ7RTV0 110 aaKnown RBP13.4□□□□□ -0.26
LIME1-210ENST00000621325 FBN3Q75N90 2809 aa13.39□□□□□ -0.27
LIME1-210ENST00000621325 PANO1I0J062 215 aa13.39□□□□□ -0.27
LIME1-210ENST00000621325 Q6ZVQ6 151 aa13.38□□□□□ -0.27
LIME1-210ENST00000621325 PRLHP81277 87 aa13.38□□□□□ -0.27
LIME1-210ENST00000621325 FUSP35637 526 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIME1-210ENST00000621325 IGLV5-48A0A075B6I7 105 aa13.36□□□□□ -0.27
LIME1-210ENST00000621325 CD164Q04900 197 aa13.34□□□□□ -0.27
LIME1-210ENST00000621325 TMEM254Q8TBM7 123 aa13.34□□□□□ -0.27
LIME1-210ENST00000621325 DNAH2Q9P225 4427 aa13.34□□□□□ -0.27
LIME1-210ENST00000621325 A0A087WTM6 91 aa13.32□□□□□ -0.28
LIME1-210ENST00000621325 Q6ZR54 194 aa13.32□□□□□ -0.28
LIME1-210ENST00000621325 TGP01266 2768 aa13.31□□□□□ -0.28
LIME1-210ENST00000621325 NREPQ16612 68 aa13.31□□□□□ -0.28
LIME1-210ENST00000621325 SCXQ7RTU7 201 aa13.31□□□□□ -0.28
LIME1-210ENST00000621325 TNP2Q05952 138 aa13.3□□□□□ -0.28
LIME1-210ENST00000621325 HIGD2AQ9BW72 106 aa13.29□□□□□ -0.28
LIME1-210ENST00000621325 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.28□□□□□ -0.28
LIME1-210ENST00000621325 SMIM29Q86T20 159 aa13.27□□□□□ -0.29
LIME1-210ENST00000621325 C3orf84H3BNL1 204 aa13.27□□□□□ -0.29
LIME1-210ENST00000621325 SRRM2Q9UQ35 2752 aaKnown RBP13.25□□□□□ -0.29
LIME1-210ENST00000621325 A0A1W2PNM2 257 aa13.24□□□□□ -0.29
LIME1-210ENST00000621325 C1orf137Q5JT78 98 aa13.24□□□□□ -0.29
LIME1-210ENST00000621325 CXCL6P80162 114 aa13.23□□□□□ -0.29
LIME1-210ENST00000621325 SPACA4Q8TDM5 124 aa13.22□□□□□ -0.29
LIME1-210ENST00000621325 HECTD4Q9Y4D8 3996 aa13.22□□□□□ -0.29
LIME1-210ENST00000621325 LY6G6CO95867 125 aa13.21□□□□□ -0.29
LIME1-210ENST00000621325 DNAH17Q9UFH2 4485 aa13.21□□□□□ -0.29
LIME1-210ENST00000621325 A0A0G2JQZ4 141 aa13.21□□□□□ -0.3
LIME1-210ENST00000621325 BPY2O14599 106 aa13.21□□□□□ -0.3
LIME1-210ENST00000621325 PSPHP1O15172 72 aa13.2□□□□□ -0.3
LIME1-210ENST00000621325 RTL8CO15255 209 aa13.2□□□□□ -0.3
LIME1-210ENST00000621325 A8MU10 97 aa13.19□□□□□ -0.3
LIME1-210ENST00000621325 C1orf134Q5TEV5 83 aa13.18□□□□□ -0.3
LIME1-210ENST00000621325 LINC00476Q8WZB0 136 aa13.17□□□□□ -0.3
LIME1-210ENST00000621325 Q8NBF4 154 aa13.17□□□□□ -0.3
LIME1-210ENST00000621325 UBE2AP49459 152 aa13.16□□□□□ -0.3
LIME1-210ENST00000621325 hDV103S1A0JD37 113 aa13.15□□□□□ -0.3
LIME1-210ENST00000621325 H0Y9J4 135 aa13.15□□□□□ -0.3
LIME1-210ENST00000621325 Q1T7F1 81 aa13.14□□□□□ -0.31
LIME1-210ENST00000621325 Q8N9L7 120 aa13.13□□□□□ -0.31
LIME1-210ENST00000621325 KRTAP21-3Q3LHN1 58 aa13.12□□□□□ -0.31
LIME1-210ENST00000621325 IGFL1Q6UW32 110 aa13.11□□□□□ -0.31
LIME1-210ENST00000621325 SPRR4Q96PI1 79 aa13.11□□□□□ -0.31
LIME1-210ENST00000621325 RBM12B-AS1Q9P1G2 102 aa13.11□□□□□ -0.31
LIME1-210ENST00000621325 KRTAP13-1Q8IUC0 172 aa13.1□□□□□ -0.31
LIME1-210ENST00000621325 OCR1Q9BZK8 76 aa13.1□□□□□ -0.31
LIME1-210ENST00000621325 IGLV5-52A0A0A0MRZ9 124 aa13.09□□□□□ -0.31
LIME1-210ENST00000621325 TRAV22A0A0B4J277 110 aa13.08□□□□□ -0.32
LIME1-210ENST00000621325 C1orf64Q8NEQ6 169 aa13.08□□□□□ -0.32
LIME1-210ENST00000621325 WWC2-AS2Q96NR7 200 aa13.07□□□□□ -0.32
LIME1-210ENST00000621325 A0A1B0GW54 56 aa13.06□□□□□ -0.32
LIME1-210ENST00000621325 IGLV8-61A0A075B6I0 122 aa13.05□□□□□ -0.32
LIME1-210ENST00000621325 SPRR1BP22528 89 aa13.05□□□□□ -0.32
LIME1-210ENST00000621325 DNAH8Q96JB1 4490 aa13.05□□□□□ -0.32
LIME1-210ENST00000621325 DNAH6Q9C0G6 4158 aa13.05□□□□□ -0.32
LIME1-210ENST00000621325 IGKV4-1P06312 121 aa13.03□□□□□ -0.32
LIME1-210ENST00000621325 PLAC8Q9NZF1 115 aa13.02□□□□□ -0.32
LIME1-210ENST00000621325 A8MUN3 132 aa13.01□□□□□ -0.33
LIME1-210ENST00000621325 PSORS1C2Q9UIG4 136 aa13.01□□□□□ -0.33
LIME1-210ENST00000621325 HYDINQ4G0P3 5121 aa13□□□□□ -0.33
LIME1-210ENST00000621325 C4orf48Q5BLP8 95 aa13□□□□□ -0.33
LIME1-210ENST00000621325 KTN1-AS1Q86SY8 53 aa12.99□□□□□ -0.33
LIME1-210ENST00000621325 KRTAP10-2P60368 255 aa12.98□□□□□ -0.33
LIME1-210ENST00000621325 FRAS1Q86XX4 4008 aa12.98□□□□□ -0.33
LIME1-210ENST00000621325 ALMS1Q8TCU4 4167 aa12.98□□□□□ -0.33
LIME1-210ENST00000621325 DNAH11Q96DT5 4516 aa12.97□□□□□ -0.33
LIME1-210ENST00000621325 A0A087WSZ3 146 aa12.97□□□□□ -0.33
LIME1-210ENST00000621325 DNAH5Q8TE73 4624 aa12.96□□□□□ -0.33
LIME1-210ENST00000621325 DSCR10P59022 87 aa12.93□□□□□ -0.34
LIME1-210ENST00000621325 FAM30AQ9NZY2 134 aa12.93□□□□□ -0.34
LIME1-210ENST00000621325 PRR4Q16378 134 aa12.92□□□□□ -0.34
LIME1-210ENST00000621325 DEFB116Q30KQ4 102 aa12.92□□□□□ -0.34
LIME1-210ENST00000621325 Q5VV11 94 aa12.9□□□□□ -0.34
LIME1-210ENST00000621325 IGLV9-49A0A0B4J1Y8 123 aa12.88□□□□□ -0.35
LIME1-210ENST00000621325 K7EQZ3 153 aa12.88□□□□□ -0.35
LIME1-210ENST00000621325 FAT2Q9NYQ8 4349 aa12.88□□□□□ -0.35
LIME1-210ENST00000621325 SPTSSBQ8NFR3 76 aa12.87□□□□□ -0.35
LIME1-210ENST00000621325 ZNF861PO60384 105 aa12.86□□□□□ -0.35
LIME1-210ENST00000621325 ANAPC11Q9NYG5 84 aa12.86□□□□□ -0.35
LIME1-210ENST00000621325 LINC00483Q53H64 154 aa12.85□□□□□ -0.35
LIME1-210ENST00000621325 CIRBP-AS1Q8TBR5 109 aa12.84□□□□□ -0.35
LIME1-210ENST00000621325 PKD1P98161 4303 aa12.82□□□□□ -0.36
LIME1-210ENST00000621325 CHKB-CPT1BH3BT56 60 aa12.8□□□□□ -0.36
LIME1-210ENST00000621325 ZNF706Q9Y5V0 76 aaPredicted RBP12.8□□□□□ -0.36
LIME1-210ENST00000621325 LCE6AA0A183 80 aa12.79□□□□□ -0.36
LIME1-210ENST00000621325 KRTAP10-1P60331 282 aa12.79□□□□□ -0.36
LIME1-210ENST00000621325 RPL37AP61513 92 aaKnown RBP12.79□□□□□ -0.36
LIME1-210ENST00000621325 ZCCHC13Q8WW36 166 aaKnown RBP12.79□□□□□ -0.36
LIME1-210ENST00000621325 IGLV7-43P04211 117 aa12.79□□□□□ -0.36
LIME1-210ENST00000621325 HCG22E2RYF7 251 aa12.76□□□□□ -0.37
LIME1-210ENST00000621325 CYP4F30PQ9H0H9 118 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms