RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 C14orf177Q52M58 125 aa9.29□□□□□ -0.92
SHROOM1-208ENST00000617339 NBDYA0A0U1RRE5 68 aa9.29□□□□□ -0.92
SHROOM1-208ENST00000617339 hDV103S1A0JD37 113 aa9.27□□□□□ -0.92
SHROOM1-208ENST00000617339 PHF5AQ7RTV0 110 aaKnown RBP9.25□□□□□ -0.93
SHROOM1-208ENST00000617339 A8MUN3 132 aa9.24□□□□□ -0.93
SHROOM1-208ENST00000617339 Q8N377 158 aa9.24□□□□□ -0.93
SHROOM1-208ENST00000617339 APLNQ9ULZ1 77 aa9.24□□□□□ -0.93
SHROOM1-208ENST00000617339 A8MU10 97 aa9.23□□□□□ -0.93
SHROOM1-208ENST00000617339 WFDC13Q8IUB5 93 aa9.23□□□□□ -0.93
SHROOM1-208ENST00000617339 K7EQZ3 153 aa9.23□□□□□ -0.93
SHROOM1-208ENST00000617339 C1orf134Q5TEV5 83 aa9.22□□□□□ -0.93
SHROOM1-208ENST00000617339 KRTAP7-1Q8IUC3 87 aa9.22□□□□□ -0.93
SHROOM1-208ENST00000617339 DNHD1Q96M86 4753 aa9.22□□□□□ -0.93
SHROOM1-208ENST00000617339 A0A1W2PNM2 257 aa9.22□□□□□ -0.93
SHROOM1-208ENST00000617339 A6NED7 52 aa9.21□□□□□ -0.93
SHROOM1-208ENST00000617339 C1orf137Q5JT78 98 aa9.21□□□□□ -0.93
SHROOM1-208ENST00000617339 DNAH7Q8WXX0 4024 aa9.21□□□□□ -0.93
SHROOM1-208ENST00000617339 TRAV22A0A0B4J277 110 aa9.21□□□□□ -0.94
SHROOM1-208ENST00000617339 IGLV5-52A0A0A0MRZ9 124 aa9.2□□□□□ -0.94
SHROOM1-208ENST00000617339 Q9BRP9 147 aa9.2□□□□□ -0.94
SHROOM1-208ENST00000617339 REG3GQ6UW15 175 aa9.19□□□□□ -0.94
SHROOM1-208ENST00000617339 PRR15LQ9BU68 103 aa9.19□□□□□ -0.94
SHROOM1-208ENST00000617339 IGLV9-49A0A0B4J1Y8 123 aa9.18□□□□□ -0.94
SHROOM1-208ENST00000617339 DNAH9Q9NYC9 4486 aa9.18□□□□□ -0.94
SHROOM1-208ENST00000617339 IGLV1-50A0A075B6I6 118 aa9.18□□□□□ -0.94
SHROOM1-208ENST00000617339 MP68P56378 58 aa9.17□□□□□ -0.94
SHROOM1-208ENST00000617339 PRR15Q8IV56 129 aa9.16□□□□□ -0.94
SHROOM1-208ENST00000617339 KCNQ1DNQ9H478 68 aa9.16□□□□□ -0.94
SHROOM1-208ENST00000617339 PLECQ15149 4684 aaKnown RBP9.16□□□□□ -0.94
SHROOM1-208ENST00000617339 FBN3Q75N90 2809 aa9.16□□□□□ -0.94
SHROOM1-208ENST00000617339 DSCR10P59022 87 aa9.16□□□□□ -0.94
SHROOM1-208ENST00000617339 Q6ZRX8 168 aa9.16□□□□□ -0.94
SHROOM1-208ENST00000617339 LINC00208Q96KT6 92 aa9.15□□□□□ -0.94
SHROOM1-208ENST00000617339 Q1T7F1 81 aa9.14□□□□□ -0.95
SHROOM1-208ENST00000617339 PRKDCP78527 4128 aaKnown RBP9.14□□□□□ -0.95
SHROOM1-208ENST00000617339 PANO1I0J062 215 aa9.14□□□□□ -0.95
SHROOM1-208ENST00000617339 DNAH3Q8TD57 4116 aa9.14□□□□□ -0.95
SHROOM1-208ENST00000617339 KRTAP11-1Q8IUC1 163 aa9.13□□□□□ -0.95
SHROOM1-208ENST00000617339 Q8NBF4 154 aa9.12□□□□□ -0.95
SHROOM1-208ENST00000617339 IGLV5-48A0A075B6I7 105 aa9.11□□□□□ -0.95
SHROOM1-208ENST00000617339 HCG22E2RYF7 251 aa9.11□□□□□ -0.95
SHROOM1-208ENST00000617339 RPL37AP61513 92 aaKnown RBP9.11□□□□□ -0.95
SHROOM1-208ENST00000617339 DHRS4-AS1Q9P1J3 65 aa9.11□□□□□ -0.95
SHROOM1-208ENST00000617339 RTL8CO15255 209 aa9.11□□□□□ -0.95
SHROOM1-208ENST00000617339 WWC2-AS2Q96NR7 200 aa9.1□□□□□ -0.95
SHROOM1-208ENST00000617339 ZCCHC13Q8WW36 166 aaKnown RBP9.09□□□□□ -0.95
SHROOM1-208ENST00000617339 C16orf90A8MZG2 172 aa9.09□□□□□ -0.96
SHROOM1-208ENST00000617339 CD164Q04900 197 aa9.08□□□□□ -0.96
SHROOM1-208ENST00000617339 TLX1NBP0CAT3 122 aa9.07□□□□□ -0.96
SHROOM1-208ENST00000617339 SPINK6Q6UWN8 80 aa9.07□□□□□ -0.96
SHROOM1-208ENST00000617339 A0A087WTM6 91 aa9.06□□□□□ -0.96
SHROOM1-208ENST00000617339 ANAPC11Q9NYG5 84 aa9.05□□□□□ -0.96
SHROOM1-208ENST00000617339 LCE6AA0A183 80 aa9.05□□□□□ -0.96
SHROOM1-208ENST00000617339 A0A087WSZ3 146 aa9.04□□□□□ -0.96
SHROOM1-208ENST00000617339 TNP2Q05952 138 aa9.04□□□□□ -0.96
SHROOM1-208ENST00000617339 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.04□□□□□ -0.96
SHROOM1-208ENST00000617339 STARD9Q9P2P6 4700 aa9.04□□□□□ -0.96
SHROOM1-208ENST00000617339 LINC00476Q8WZB0 136 aa9.04□□□□□ -0.96
SHROOM1-208ENST00000617339 H0Y9J4 135 aa9.03□□□□□ -0.96
SHROOM1-208ENST00000617339 Q5VV11 94 aa9.03□□□□□ -0.96
SHROOM1-208ENST00000617339 C9orf163Q8N9P6 203 aa9.03□□□□□ -0.96
SHROOM1-208ENST00000617339 CDK2AP2O75956 126 aa9.02□□□□□ -0.97
SHROOM1-208ENST00000617339 KRTAP4-16G5E9R7 235 aaPredicted RBP9.01□□□□□ -0.97
SHROOM1-208ENST00000617339 H0Y9P7 68 aa9□□□□□ -0.97
SHROOM1-208ENST00000617339 CYP4F30PQ9H0H9 118 aa9□□□□□ -0.97
SHROOM1-208ENST00000617339 KMT2AQ03164 3969 aa9□□□□□ -0.97
SHROOM1-208ENST00000617339 NDUFB1O75438 58 aa8.99□□□□□ -0.97
SHROOM1-208ENST00000617339 PCOTHQ58A44 107 aa8.99□□□□□ -0.97
SHROOM1-208ENST00000617339 RBM12B-AS1Q9P1G2 102 aa8.99□□□□□ -0.97
SHROOM1-208ENST00000617339 SPRR4Q96PI1 79 aa8.99□□□□□ -0.97
SHROOM1-208ENST00000617339 NDUFS5O43920 106 aa8.98□□□□□ -0.97
SHROOM1-208ENST00000617339 DNAH1Q9P2D7 4330 aa8.97□□□□□ -0.97
SHROOM1-208ENST00000617339 IGFL1Q6UW32 110 aa8.97□□□□□ -0.97
SHROOM1-208ENST00000617339 CIRBP-AS1Q8TBR5 109 aa8.97□□□□□ -0.97
SHROOM1-208ENST00000617339 CNBPP62633 177 aaKnown RBP8.97□□□□□ -0.97
SHROOM1-208ENST00000617339 SPRR1AP35321 89 aa8.96□□□□□ -0.97
SHROOM1-208ENST00000617339 PLA2G2DQ9UNK4 145 aa8.96□□□□□ -0.97
SHROOM1-208ENST00000617339 SPAG11AQ6PDA7 123 aa8.95□□□□□ -0.98
SHROOM1-208ENST00000617339 Q8N9P0 234 aaPredicted RBP8.95□□□□□ -0.98
SHROOM1-208ENST00000617339 CASC2Q6XLA1 102 aa8.94□□□□□ -0.98
SHROOM1-208ENST00000617339 SMR3BP02814 79 aaPredicted RBP8.94□□□□□ -0.98
SHROOM1-208ENST00000617339 KTN1-AS1Q86SY8 53 aa8.94□□□□□ -0.98
SHROOM1-208ENST00000617339 IGLV5-37A0A075B6J1 123 aa8.93□□□□□ -0.98
SHROOM1-208ENST00000617339 A0A1B0GW54 56 aa8.92□□□□□ -0.98
SHROOM1-208ENST00000617339 MOBPQ13875 183 aa8.91□□□□□ -0.98
SHROOM1-208ENST00000617339 Q6ZRN7 208 aaPredicted RBP8.9□□□□□ -0.98
SHROOM1-208ENST00000617339 LIMD2Q9BT23 127 aa8.9□□□□□ -0.98
SHROOM1-208ENST00000617339 LCA10Q71F78 164 aa8.89□□□□□ -0.99
SHROOM1-208ENST00000617339 PSORS1C2Q9UIG4 136 aa8.88□□□□□ -0.99
SHROOM1-208ENST00000617339 FLG2Q5D862 2391 aaPredicted RBP8.88□□□□□ -0.99
SHROOM1-208ENST00000617339 COA5Q86WW8 74 aa8.88□□□□□ -0.99
SHROOM1-208ENST00000617339 DMBT1Q9UGM3 2413 aaPredicted RBP8.86□□□□□ -0.99
SHROOM1-208ENST00000617339 C4orf48Q5BLP8 95 aa8.85□□□□□ -0.99
SHROOM1-208ENST00000617339 KRTAP10-2P60368 255 aa8.84□□□□□ -0.99
SHROOM1-208ENST00000617339 KRTAP29-1A8MX34 341 aaPredicted RBP8.82□□□□□ -1
SHROOM1-208ENST00000617339 VPS13DQ5THJ4 4388 aa8.81□□□□□ -1
SHROOM1-208ENST00000617339 ATP11AUNQ6ZP68 121 aa8.81□□□□□ -1
SHROOM1-208ENST00000617339 SPANXA2-OT1Q8N9U9 137 aa8.8□□□□□ -1
SHROOM1-208ENST00000617339 IGHV6-1A0A0B4J1U7 121 aa8.79□□□□□ -1
SHROOM1-208ENST00000617339 SPACA4Q8TDM5 124 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms