RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 SIGMAR1Q99720 223 aa6.37□□□□□ -1.39
ZNF540-209ENST00000590588 GAGE2EQ4V326 116 aa6.36□□□□□ -1.39
ZNF540-209ENST00000590588 KRTAP7-1Q8IUC3 87 aa6.36□□□□□ -1.39
ZNF540-209ENST00000590588 GAGE2DQ9UEU5 116 aa6.36□□□□□ -1.39
ZNF540-209ENST00000590588 ASB16-AS1Q495Z4 193 aa6.35□□□□□ -1.39
ZNF540-209ENST00000590588 MTURNQ8N3F0 131 aa6.35□□□□□ -1.39
ZNF540-209ENST00000590588 NDUFC2-KCTD14E9PQ53 114 aa6.34□□□□□ -1.39
ZNF540-209ENST00000590588 IGLV6-57P01721 117 aa6.34□□□□□ -1.39
ZNF540-209ENST00000590588 LINC00304Q8N9R0 145 aa6.34□□□□□ -1.39
ZNF540-209ENST00000590588 UNQ6190/PRO20217Q6UXQ8 127 aa6.33□□□□□ -1.4
ZNF540-209ENST00000590588 OR13C6PQ8NH95 151 aa6.33□□□□□ -1.4
ZNF540-209ENST00000590588 C6orf48Q9UBA6 75 aa6.33□□□□□ -1.4
ZNF540-209ENST00000590588 JMJD7-PLA2G4BH0Y9G9 81 aa6.32□□□□□ -1.4
ZNF540-209ENST00000590588 BAALC-AS2P0C853 105 aa6.32□□□□□ -1.4
ZNF540-209ENST00000590588 S100A7L2Q5SY68 101 aa6.32□□□□□ -1.4
ZNF540-209ENST00000590588 Q6Q795 121 aa6.32□□□□□ -1.4
ZNF540-209ENST00000590588 OBSCN-AS1Q96MR7 158 aa6.32□□□□□ -1.4
ZNF540-209ENST00000590588 KRTAP4-1Q9BYQ7 146 aa6.32□□□□□ -1.4
ZNF540-209ENST00000590588 ORMDL1Q9P0S3 153 aa6.32□□□□□ -1.4
ZNF540-209ENST00000590588 TMEM256-PLSCR3K7ERE1 68 aa6.31□□□□□ -1.4
ZNF540-209ENST00000590588 C10orf25Q5T742 122 aa6.31□□□□□ -1.4
ZNF540-209ENST00000590588 TEX49A0A1B0GTD5 131 aa6.3□□□□□ -1.4
ZNF540-209ENST00000590588 M0R378 163 aa6.3□□□□□ -1.4
ZNF540-209ENST00000590588 SEC61BP60468 96 aaKnown RBP6.3□□□□□ -1.4
ZNF540-209ENST00000590588 KRTAP13-2Q52LG2 175 aa6.3□□□□□ -1.4
ZNF540-209ENST00000590588 FAM218AQ96MZ4 157 aa6.3□□□□□ -1.4
ZNF540-209ENST00000590588 ANAPC11Q9NYG5 84 aa6.3□□□□□ -1.4
ZNF540-209ENST00000590588 IGLV5-37A0A075B6J1 123 aa6.29□□□□□ -1.4
ZNF540-209ENST00000590588 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-209ENST00000590588 VPREB1P12018 145 aa6.28□□□□□ -1.4
ZNF540-209ENST00000590588 PDE6GP18545 87 aa6.28□□□□□ -1.4
ZNF540-209ENST00000590588 IMUPQ9GZP8 106 aa6.28□□□□□ -1.4
ZNF540-209ENST00000590588 TRAV23DV6A0A075B6W5 121 aa6.27□□□□□ -1.41
ZNF540-209ENST00000590588 FAM229BQ4G0N7 80 aa6.27□□□□□ -1.41
ZNF540-209ENST00000590588 C9orf129Q5T035 196 aaKnown RBP6.27□□□□□ -1.41
ZNF540-209ENST00000590588 LINC00575Q6W349 94 aa6.27□□□□□ -1.41
ZNF540-209ENST00000590588 FP248Q71RG6 208 aaPredicted RBP6.27□□□□□ -1.41
ZNF540-209ENST00000590588 LOC100996750A0A140TA64 210 aa6.26□□□□□ -1.41
ZNF540-209ENST00000590588 BCE1O60756 84 aa6.26□□□□□ -1.41
ZNF540-209ENST00000590588 C6orf99Q4VX62 202 aa6.26□□□□□ -1.41
ZNF540-209ENST00000590588 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.26□□□□□ -1.41
ZNF540-209ENST00000590588 KRTAP4-6Q9BYQ5 205 aa6.26□□□□□ -1.41
ZNF540-209ENST00000590588 C22orf24Q9Y442 160 aa6.26□□□□□ -1.41
ZNF540-209ENST00000590588 hADV29S1A0JD25 119 aa6.25□□□□□ -1.41
ZNF540-209ENST00000590588 ELOF1P60002 83 aaKnown RBP6.25□□□□□ -1.41
ZNF540-209ENST00000590588 TRBV7-7A0A0K0K1E9 115 aa6.24□□□□□ -1.41
ZNF540-209ENST00000590588 NCR3O14931 201 aa6.24□□□□□ -1.41
ZNF540-209ENST00000590588 ZNF73O43830 326 aaPredicted RBP6.24□□□□□ -1.41
ZNF540-209ENST00000590588 MT1HP80294 61 aa6.24□□□□□ -1.41
ZNF540-209ENST00000590588 KRTAP13-3Q3SY46 172 aa6.24□□□□□ -1.41
ZNF540-209ENST00000590588 LINC00643Q86TS7 51 aa6.24□□□□□ -1.41
ZNF540-209ENST00000590588 TRBV10-3A0A0K0K1G6 114 aa6.23□□□□□ -1.41
ZNF540-209ENST00000590588 H3BS24 57 aa6.23□□□□□ -1.41
ZNF540-209ENST00000590588 Q8NDZ9 215 aa6.23□□□□□ -1.41
ZNF540-209ENST00000590588 KCNQ1DNQ9H478 68 aa6.23□□□□□ -1.41
ZNF540-209ENST00000590588 PRYO14603 147 aa6.22□□□□□ -1.41
ZNF540-209ENST00000590588 COX7BP24311 80 aa6.22□□□□□ -1.41
ZNF540-209ENST00000590588 ATP5EP2Q5VTU8 51 aa6.22□□□□□ -1.41
ZNF540-209ENST00000590588 SPAG11AQ6PDA7 123 aa6.22□□□□□ -1.41
ZNF540-209ENST00000590588 LOC110117498A0A087WWA1 95 aa6.21□□□□□ -1.42
ZNF540-209ENST00000590588 NKAPP1Q8N9T2 125 aa6.21□□□□□ -1.42
ZNF540-209ENST00000590588 KRTAP10-6P60371 365 aaPredicted RBP6.2□□□□□ -1.42
ZNF540-209ENST00000590588 MRPL55Q7Z7F7 128 aaKnown RBP6.2□□□□□ -1.42
ZNF540-209ENST00000590588 XAGE1AQ9HD64 81 aa6.2□□□□□ -1.42
ZNF540-209ENST00000590588 A0A1B0GV72 72 aa6.19□□□□□ -1.42
ZNF540-209ENST00000590588 A0A1B0GW54 56 aa6.19□□□□□ -1.42
ZNF540-209ENST00000590588 MT-ATP8P03928 68 aa6.19□□□□□ -1.42
ZNF540-209ENST00000590588 CCKP06307 115 aa6.19□□□□□ -1.42
ZNF540-209ENST00000590588 SPRR1AP35321 89 aa6.19□□□□□ -1.42
ZNF540-209ENST00000590588 DHRS4-AS1Q9P1J3 65 aa6.19□□□□□ -1.42
ZNF540-209ENST00000590588 UBE2AP49459 152 aa6.18□□□□□ -1.42
ZNF540-209ENST00000590588 KRTAP19-2Q3LHN2 52 aa6.18□□□□□ -1.42
ZNF540-209ENST00000590588 Q6JHZ5 121 aa6.17□□□□□ -1.42
ZNF540-209ENST00000590588 KRTAP13-1Q8IUC0 172 aa6.17□□□□□ -1.42
ZNF540-209ENST00000590588 RPL37AP8A6NKH3 93 aa6.16□□□□□ -1.42
ZNF540-209ENST00000590588 RBM3P98179 157 aaKnown RBP6.16□□□□□ -1.42
ZNF540-209ENST00000590588 GAGE2AQ6NT46 116 aa6.16□□□□□ -1.42
ZNF540-209ENST00000590588 Q6ZQY7 126 aa6.16□□□□□ -1.42
ZNF540-209ENST00000590588 C14orf132Q9NPU4 83 aa6.15□□□□□ -1.42
ZNF540-209ENST00000590588 KRTAP4-16G5E9R7 235 aaPredicted RBP6.14□□□□□ -1.43
ZNF540-209ENST00000590588 Q6ZRX8 168 aa6.14□□□□□ -1.43
ZNF540-209ENST00000590588 C3orf22Q8N5N4 141 aa6.14□□□□□ -1.43
ZNF540-209ENST00000590588 DSCR8Q96T75 97 aa6.14□□□□□ -1.43
ZNF540-209ENST00000590588 TRBV7-4A0A0J9YYF1 115 aa6.13□□□□□ -1.43
ZNF540-209ENST00000590588 Q6ZQT0 140 aa6.13□□□□□ -1.43
ZNF540-209ENST00000590588 M0R2T5 61 aa6.12□□□□□ -1.43
ZNF540-209ENST00000590588 XP32Q5T750 250 aa6.12□□□□□ -1.43
ZNF540-209ENST00000590588 UBL5Q9BZL1 73 aa6.12□□□□□ -1.43
ZNF540-209ENST00000590588 LAMTOR3Q9UHA4 124 aa6.12□□□□□ -1.43
ZNF540-209ENST00000590588 IGLV5-48A0A075B6I7 105 aa6.11□□□□□ -1.43
ZNF540-209ENST00000590588 ETDCA0A1B0GVM5 59 aa6.11□□□□□ -1.43
ZNF540-209ENST00000590588 B5MCH6 92 aa6.1□□□□□ -1.43
ZNF540-209ENST00000590588 NDUFV3P56181 108 aaKnown RBP6.1□□□□□ -1.43
ZNF540-209ENST00000590588 SMCR5Q8TEV8 140 aa6.1□□□□□ -1.43
ZNF540-209ENST00000590588 SVIPQ8NHG7 77 aa6.09□□□□□ -1.43
ZNF540-209ENST00000590588 LINC00846Q9NV44 126 aa6.09□□□□□ -1.43
ZNF540-209ENST00000590588 SPINK1P00995 79 aa6.08□□□□□ -1.44
ZNF540-209ENST00000590588 ANAPC13Q9BS18 74 aa6.08□□□□□ -1.44
ZNF540-209ENST00000590588 HIST1H4AP62805 103 aaKnown RBP6.07□□□□□ -1.44
ZNF540-209ENST00000590588 CXCL6P80162 114 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms