RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 HIST1H2BKO60814 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BJP06899 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BOP23527 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BBP33778 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BDP58876 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BCP62807 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST2H2BEQ16778 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BHQ93079 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BNQ99877 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 HIST1H2BMQ99879 126 aa7.92□□□□□ -1.14
CLK3-223ENST00000568488 SERF1AO75920 110 aa7.91□□□□□ -1.14
CLK3-223ENST00000568488 LINC00310P59036 64 aa7.91□□□□□ -1.14
CLK3-223ENST00000568488 Q6JHZ5 121 aa7.91□□□□□ -1.14
CLK3-223ENST00000568488 CLEC2BQ92478 149 aa7.91□□□□□ -1.14
CLK3-223ENST00000568488 E9PLD3 99 aa7.9□□□□□ -1.14
CLK3-223ENST00000568488 NHP2Q9NX24 153 aaKnown RBP7.9□□□□□ -1.14
CLK3-223ENST00000568488 A4D1N5 150 aa7.89□□□□□ -1.15
CLK3-223ENST00000568488 A6NDN8 102 aa7.89□□□□□ -1.15
CLK3-223ENST00000568488 KRTAP16-1A8MUX0 517 aa7.89□□□□□ -1.15
CLK3-223ENST00000568488 TIMM17BO60830 172 aa7.89□□□□□ -1.15
CLK3-223ENST00000568488 FABP4P15090 132 aa7.89□□□□□ -1.15
CLK3-223ENST00000568488 MPLKIPQ8TAP9 179 aa7.88□□□□□ -1.15
CLK3-223ENST00000568488 HRES1P13985 223 aa7.87□□□□□ -1.15
CLK3-223ENST00000568488 HSPB8Q9UJY1 196 aa7.87□□□□□ -1.15
CLK3-223ENST00000568488 TRAV13-2A0A0B4J235 113 aa7.85□□□□□ -1.15
CLK3-223ENST00000568488 COA6Q5JTJ3 125 aaKnown RBP7.85□□□□□ -1.15
CLK3-223ENST00000568488 DSCR10P59022 87 aa7.84□□□□□ -1.15
CLK3-223ENST00000568488 OCIAD2Q56VL3 154 aa7.84□□□□□ -1.15
CLK3-223ENST00000568488 Q6ZVH6 145 aa7.83□□□□□ -1.16
CLK3-223ENST00000568488 Q8N9P0 234 aaPredicted RBP7.83□□□□□ -1.16
CLK3-223ENST00000568488 ZNF815PA8K554 130 aa7.82□□□□□ -1.16
CLK3-223ENST00000568488 TMA7Q9Y2S6 64 aaKnown RBP7.8□□□□□ -1.16
CLK3-223ENST00000568488 Q6ZQY7 126 aa7.79□□□□□ -1.16
CLK3-223ENST00000568488 NOTCH2NLQ7Z3S9 236 aa7.79□□□□□ -1.16
CLK3-223ENST00000568488 MTURNQ8N3F0 131 aa7.79□□□□□ -1.16
CLK3-223ENST00000568488 SMIM11BQ8TCY0 68 aa7.79□□□□□ -1.16
CLK3-223ENST00000568488 TTTY13Q9BZ97 58 aa7.79□□□□□ -1.16
CLK3-223ENST00000568488 SS18L2Q9UHA2 77 aa7.78□□□□□ -1.16
CLK3-223ENST00000568488 SNRPEP62304 92 aaKnown RBP7.77□□□□□ -1.17
CLK3-223ENST00000568488 HIST3H2BBQ8N257 126 aa7.77□□□□□ -1.17
CLK3-223ENST00000568488 A8MWP4 228 aa7.76□□□□□ -1.17
CLK3-223ENST00000568488 H3BUT2 72 aa7.75□□□□□ -1.17
CLK3-223ENST00000568488 S100A6P06703 90 aa7.75□□□□□ -1.17
CLK3-223ENST00000568488 VAMP3Q15836 100 aa7.75□□□□□ -1.17
CLK3-223ENST00000568488 LINC00575Q6W349 94 aa7.75□□□□□ -1.17
CLK3-223ENST00000568488 hADV29S1A0JD25 119 aa7.74□□□□□ -1.17
CLK3-223ENST00000568488 COPS9Q8WXC6 57 aa7.74□□□□□ -1.17
CLK3-223ENST00000568488 ANKRD39Q53RE8 183 aa7.73□□□□□ -1.17
CLK3-223ENST00000568488 SCGB1D4Q6XE38 83 aa7.73□□□□□ -1.17
CLK3-223ENST00000568488 HIST1H2BLQ99880 126 aa7.73□□□□□ -1.17
CLK3-223ENST00000568488 LINC00313P59037 77 aa7.72□□□□□ -1.17
CLK3-223ENST00000568488 SNHG12Q9BXW3 62 aa7.72□□□□□ -1.17
CLK3-223ENST00000568488 IFITM1P13164 125 aa7.71□□□□□ -1.18
CLK3-223ENST00000568488 MUSTN1Q8IVN3 82 aa7.71□□□□□ -1.18
CLK3-223ENST00000568488 MDN1Q9NU22 5596 aa7.7□□□□□ -1.18
CLK3-223ENST00000568488 SIGMAR1Q99720 223 aa7.69□□□□□ -1.18
CLK3-223ENST00000568488 C3orf79P0CE67 100 aa7.68□□□□□ -1.18
CLK3-223ENST00000568488 S100A2P29034 98 aa7.68□□□□□ -1.18
CLK3-223ENST00000568488 A0A087WSZ3 146 aa7.67□□□□□ -1.18
CLK3-223ENST00000568488 SCGB1D1O95968 90 aa7.67□□□□□ -1.18
CLK3-223ENST00000568488 SYS1-DBNDD2H3BUS1 97 aa7.66□□□□□ -1.18
CLK3-223ENST00000568488 KRTDAPP60985 99 aa7.65□□□□□ -1.18
CLK3-223ENST00000568488 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.65□□□□□ -1.18
CLK3-223ENST00000568488 TEN1Q86WV5 123 aa7.65□□□□□ -1.18
CLK3-223ENST00000568488 LINC01545Q5VT33 79 aa7.63□□□□□ -1.19
CLK3-223ENST00000568488 PET117Q6UWS5 81 aa7.63□□□□□ -1.19
CLK3-223ENST00000568488 PPDPFLQ8WWR9 84 aa7.63□□□□□ -1.19
CLK3-223ENST00000568488 A6NN06 94 aa7.62□□□□□ -1.19
CLK3-223ENST00000568488 LOC105371267A0A1B0GV96 52 aa7.61□□□□□ -1.19
CLK3-223ENST00000568488 KMT2DO14686 5537 aa7.6□□□□□ -1.19
CLK3-223ENST00000568488 IGKV4-1P06312 121 aa7.59□□□□□ -1.19
CLK3-223ENST00000568488 SPINK7P58062 85 aa7.58□□□□□ -1.2
CLK3-223ENST00000568488 KRTAP2-3P0C7H8 128 aa7.57□□□□□ -1.2
CLK3-223ENST00000568488 ATOH7Q8N100 152 aa7.57□□□□□ -1.2
CLK3-223ENST00000568488 KRTAP2-4Q9BYR9 128 aa7.57□□□□□ -1.2
CLK3-223ENST00000568488 PYY3Q5JQD4 70 aa7.56□□□□□ -1.2
CLK3-223ENST00000568488 GHRHP01286 108 aa7.55□□□□□ -1.2
CLK3-223ENST00000568488 IGHV6-1A0A0B4J1U7 121 aa7.53□□□□□ -1.2
CLK3-223ENST00000568488 KRTAP5-9P26371 169 aa7.53□□□□□ -1.2
CLK3-223ENST00000568488 C12orf57Q99622 126 aa7.53□□□□□ -1.2
CLK3-223ENST00000568488 NDUFV3P56181 108 aaKnown RBP7.52□□□□□ -1.21
CLK3-223ENST00000568488 DEFB116Q30KQ4 102 aa7.52□□□□□ -1.21
CLK3-223ENST00000568488 WFDC13Q8IUB5 93 aa7.51□□□□□ -1.21
CLK3-223ENST00000568488 BVES-AS1Q5T3Y7 98 aa7.5□□□□□ -1.21
CLK3-223ENST00000568488 ZCCHC13Q8WW36 166 aaKnown RBP7.49□□□□□ -1.21
CLK3-223ENST00000568488 A0A1W2PNM2 257 aa7.48□□□□□ -1.21
CLK3-223ENST00000568488 H3BMG7 143 aa7.48□□□□□ -1.21
CLK3-223ENST00000568488 PAM16Q9Y3D7 125 aa7.45□□□□□ -1.22
CLK3-223ENST00000568488 SMIM6P0DI80 62 aa7.44□□□□□ -1.22
CLK3-223ENST00000568488 SPATA45Q537H7 98 aa7.44□□□□□ -1.22
CLK3-223ENST00000568488 VAMP8Q9BV40 100 aa7.44□□□□□ -1.22
CLK3-223ENST00000568488 HSBP1L1C9JCN9 74 aa7.43□□□□□ -1.22
CLK3-223ENST00000568488 FAM218AQ96MZ4 157 aa7.43□□□□□ -1.22
CLK3-223ENST00000568488 SNCGO76070 127 aa7.42□□□□□ -1.22
CLK3-223ENST00000568488 COX8AP10176 69 aa7.4□□□□□ -1.22
CLK3-223ENST00000568488 FABP2P12104 132 aa7.4□□□□□ -1.22
CLK3-223ENST00000568488 C14orf144Q96I85 54 aa7.4□□□□□ -1.22
CLK3-223ENST00000568488 LINC00472Q9H8W2 130 aa7.4□□□□□ -1.22
CLK3-223ENST00000568488 C8orf87E5RJ46 101 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms