RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 PCP4P48539 62 aa8.54□□□□□ -1.04
USP3-221ENST00000561442 Q6ZRX8 168 aa8.54□□□□□ -1.04
USP3-221ENST00000561442 SMIM11BQ8TCY0 68 aa8.53□□□□□ -1.04
USP3-221ENST00000561442 Q9BRP9 147 aa8.53□□□□□ -1.04
USP3-221ENST00000561442 A0A087X002 238 aa8.52□□□□□ -1.05
USP3-221ENST00000561442 ERC2-IT1O76042 136 aa8.52□□□□□ -1.05
USP3-221ENST00000561442 SNCGO76070 127 aa8.52□□□□□ -1.05
USP3-221ENST00000561442 DNAL4O96015 105 aa8.52□□□□□ -1.05
USP3-221ENST00000561442 ACYP1P07311 99 aa8.51□□□□□ -1.05
USP3-221ENST00000561442 C6orf99Q4VX62 202 aa8.51□□□□□ -1.05
USP3-221ENST00000561442 SPRR4Q96PI1 79 aa8.51□□□□□ -1.05
USP3-221ENST00000561442 CRYGAP11844 174 aa8.5□□□□□ -1.05
USP3-221ENST00000561442 COX7BP24311 80 aa8.49□□□□□ -1.05
USP3-221ENST00000561442 CDIP1Q9H305 208 aa8.49□□□□□ -1.05
USP3-221ENST00000561442 ZNF706Q9Y5V0 76 aaPredicted RBP8.49□□□□□ -1.05
USP3-221ENST00000561442 BAALC-AS2P0C853 105 aa8.48□□□□□ -1.05
USP3-221ENST00000561442 FAM229BQ4G0N7 80 aa8.48□□□□□ -1.05
USP3-221ENST00000561442 TEX49A0A1B0GTD5 131 aa8.47□□□□□ -1.05
USP3-221ENST00000561442 H3BQ85 93 aa8.47□□□□□ -1.05
USP3-221ENST00000561442 KRTAP13-2Q52LG2 175 aa8.47□□□□□ -1.05
USP3-221ENST00000561442 GAGE2AQ6NT46 116 aa8.47□□□□□ -1.05
USP3-221ENST00000561442 ELOF1P60002 83 aaKnown RBP8.46□□□□□ -1.06
USP3-221ENST00000561442 TYMSOSQ8TAI1 123 aa8.46□□□□□ -1.06
USP3-221ENST00000561442 FAM218AQ96MZ4 157 aa8.46□□□□□ -1.06
USP3-221ENST00000561442 HMCN2Q8NDA2 5059 aa8.45□□□□□ -1.06
USP3-221ENST00000561442 C3orf22Q8N5N4 141 aa8.45□□□□□ -1.06
USP3-221ENST00000561442 ST20-AS1Q8NBB2 130 aa8.45□□□□□ -1.06
USP3-221ENST00000561442 TRBV7-6A0A0J9YX20 115 aa8.44□□□□□ -1.06
USP3-221ENST00000561442 DHRS4-AS1Q9P1J3 65 aa8.44□□□□□ -1.06
USP3-221ENST00000561442 GHRHP01286 108 aa8.43□□□□□ -1.06
USP3-221ENST00000561442 ORMDL1Q9P0S3 153 aa8.43□□□□□ -1.06
USP3-221ENST00000561442 LINC00483Q53H64 154 aa8.42□□□□□ -1.06
USP3-221ENST00000561442 Q6Q795 121 aa8.41□□□□□ -1.06
USP3-221ENST00000561442 OBSCN-AS1Q96MR7 158 aa8.41□□□□□ -1.06
USP3-221ENST00000561442 TMEM256-PLSCR3K7ERE1 68 aa8.4□□□□□ -1.06
USP3-221ENST00000561442 JMJD7-PLA2G4BH0Y9G9 81 aa8.39□□□□□ -1.07
USP3-221ENST00000561442 C21orf62-AS1Q17RA5 79 aa8.39□□□□□ -1.07
USP3-221ENST00000561442 IGLV9-49A0A0B4J1Y8 123 aa8.38□□□□□ -1.07
USP3-221ENST00000561442 DEFB105AQ8NG35 78 aa8.38□□□□□ -1.07
USP3-221ENST00000561442 LINC00575Q6W349 94 aa8.37□□□□□ -1.07
USP3-221ENST00000561442 LINC00304Q8N9R0 145 aa8.37□□□□□ -1.07
USP3-221ENST00000561442 MOBPQ13875 183 aa8.36□□□□□ -1.07
USP3-221ENST00000561442 MT-ATP8P03928 68 aa8.35□□□□□ -1.07
USP3-221ENST00000561442 IMUPQ9GZP8 106 aa8.35□□□□□ -1.07
USP3-221ENST00000561442 hADV29S1A0JD25 119 aa8.34□□□□□ -1.07
USP3-221ENST00000561442 Q8NBF4 154 aa8.34□□□□□ -1.07
USP3-221ENST00000561442 SPRR1BP22528 89 aa8.33□□□□□ -1.08
USP3-221ENST00000561442 C9orf153Q5TBE3 101 aa8.33□□□□□ -1.08
USP3-221ENST00000561442 LINC00643Q86TS7 51 aa8.33□□□□□ -1.08
USP3-221ENST00000561442 TRBV7-7A0A0K0K1E9 115 aa8.31□□□□□ -1.08
USP3-221ENST00000561442 A0A1B0GV72 72 aa8.31□□□□□ -1.08
USP3-221ENST00000561442 LINC01547P58512 204 aaPredicted RBP8.31□□□□□ -1.08
USP3-221ENST00000561442 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.31□□□□□ -1.08
USP3-221ENST00000561442 PDE6GP18545 87 aa8.3□□□□□ -1.08
USP3-221ENST00000561442 LAMTOR3Q9UHA4 124 aa8.3□□□□□ -1.08
USP3-221ENST00000561442 IGLV5-48A0A075B6I7 105 aa8.29□□□□□ -1.08
USP3-221ENST00000561442 C4orf48Q5BLP8 95 aa8.29□□□□□ -1.08
USP3-221ENST00000561442 Q6ZQY7 126 aa8.29□□□□□ -1.08
USP3-221ENST00000561442 SSBP3-AS1Q7Z2R9 100 aa8.28□□□□□ -1.08
USP3-221ENST00000561442 Q8N377 158 aa8.28□□□□□ -1.08
USP3-221ENST00000561442 CCKP06307 115 aa8.27□□□□□ -1.09
USP3-221ENST00000561442 SPAG11AQ6PDA7 123 aa8.27□□□□□ -1.09
USP3-221ENST00000561442 LRP2P98164 4655 aa8.26□□□□□ -1.09
USP3-221ENST00000561442 PRR4Q16378 134 aa8.26□□□□□ -1.09
USP3-221ENST00000561442 SMIM29Q86T20 159 aa8.26□□□□□ -1.09
USP3-221ENST00000561442 C14orf132Q9NPU4 83 aa8.26□□□□□ -1.09
USP3-221ENST00000561442 LOC110117498A0A087WWA1 95 aa8.25□□□□□ -1.09
USP3-221ENST00000561442 RETNLBQ9BQ08 111 aa8.25□□□□□ -1.09
USP3-221ENST00000561442 LPAP08519 4548 aa8.24□□□□□ -1.09
USP3-221ENST00000561442 RBM3P98179 157 aaKnown RBP8.23□□□□□ -1.09
USP3-221ENST00000561442 ATP5EP2Q5VTU8 51 aa8.23□□□□□ -1.09
USP3-221ENST00000561442 Q6JHZ5 121 aa8.22□□□□□ -1.09
USP3-221ENST00000561442 SPINK1P00995 79 aa8.21□□□□□ -1.1
USP3-221ENST00000561442 HRCT1Q6UXD1 115 aa8.21□□□□□ -1.1
USP3-221ENST00000561442 A0A0G2JQZ4 141 aa8.2□□□□□ -1.1
USP3-221ENST00000561442 DSCR8Q96T75 97 aa8.2□□□□□ -1.1
USP3-221ENST00000561442 F8WEM9 126 aa8.19□□□□□ -1.1
USP3-221ENST00000561442 NDUFV3P56181 108 aaKnown RBP8.19□□□□□ -1.1
USP3-221ENST00000561442 ANAPC13Q9BS18 74 aa8.19□□□□□ -1.1
USP3-221ENST00000561442 Q6ZQT0 140 aa8.18□□□□□ -1.1
USP3-221ENST00000561442 UBL5Q9BZL1 73 aa8.17□□□□□ -1.1
USP3-221ENST00000561442 LINC00846Q9NV44 126 aa8.17□□□□□ -1.1
USP3-221ENST00000561442 UBR4Q5T4S7 5183 aa8.15□□□□□ -1.11
USP3-221ENST00000561442 TRBV7-4A0A0J9YYF1 115 aa8.14□□□□□ -1.11
USP3-221ENST00000561442 A0A1B0GW54 56 aa8.14□□□□□ -1.11
USP3-221ENST00000561442 RPS29P62273 56 aaKnown RBP8.14□□□□□ -1.11
USP3-221ENST00000561442 IGLV7-46A0A075B6I9 117 aa8.12□□□□□ -1.11
USP3-221ENST00000561442 IGLV8-61A0A075B6I0 122 aa8.11□□□□□ -1.11
USP3-221ENST00000561442 CD164Q04900 197 aa8.11□□□□□ -1.11
USP3-221ENST00000561442 LIMD2Q9BT23 127 aa8.11□□□□□ -1.11
USP3-221ENST00000561442 IGFL1Q6UW32 110 aa8.1□□□□□ -1.11
USP3-221ENST00000561442 FAM236AA0A1B0GUQ0 79 aa8.09□□□□□ -1.11
USP3-221ENST00000561442 FAM236BA0A1B0GV22 79 aa8.09□□□□□ -1.11
USP3-221ENST00000561442 ATOX1O00244 68 aa8.09□□□□□ -1.11
USP3-221ENST00000561442 HIST1H4AP62805 103 aaKnown RBP8.09□□□□□ -1.11
USP3-221ENST00000561442 FP248Q71RG6 208 aaPredicted RBP8.08□□□□□ -1.12
USP3-221ENST00000561442 CXCL6P80162 114 aa8.07□□□□□ -1.12
USP3-221ENST00000561442 IGKV3D-7A0A0C4DH55 119 aa8.03□□□□□ -1.12
USP3-221ENST00000561442 TPRXLQ17RH7 258 aa8.03□□□□□ -1.12
USP3-221ENST00000561442 Q6ZVQ6 151 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms