RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.21□□□□□ -1.25
CDH3-203ENST00000542274 LINC01558Q9Y6Z2 57 aa7.21□□□□□ -1.26
CDH3-203ENST00000542274 ANGP03950 147 aaKnown RBP7.21□□□□□ -1.26
CDH3-203ENST00000542274 K7EIL1 84 aa7.2□□□□□ -1.26
CDH3-203ENST00000542274 SPART-AS1P0CW21 52 aa7.2□□□□□ -1.26
CDH3-203ENST00000542274 PLAC8Q9NZF1 115 aa7.2□□□□□ -1.26
CDH3-203ENST00000542274 LINC00575Q6W349 94 aa7.19□□□□□ -1.26
CDH3-203ENST00000542274 SPAG11BQ08648 103 aa7.19□□□□□ -1.26
CDH3-203ENST00000542274 A0A1B0GUV1 79 aa7.18□□□□□ -1.26
CDH3-203ENST00000542274 SPAG11AQ6PDA7 123 aa7.18□□□□□ -1.26
CDH3-203ENST00000542274 COA5Q86WW8 74 aa7.18□□□□□ -1.26
CDH3-203ENST00000542274 SPANXA2-OT1Q8N9U9 137 aa7.18□□□□□ -1.26
CDH3-203ENST00000542274 A0A0J9YWU9 116 aa7.18□□□□□ -1.26
CDH3-203ENST00000542274 DNHD1Q96M86 4753 aa7.17□□□□□ -1.26
CDH3-203ENST00000542274 LYSTQ99698 3801 aa7.17□□□□□ -1.26
CDH3-203ENST00000542274 A0A087X002 238 aa7.16□□□□□ -1.26
CDH3-203ENST00000542274 HUWE1Q7Z6Z7 4374 aaKnown RBP7.16□□□□□ -1.26
CDH3-203ENST00000542274 COL7A1Q02388 2944 aa7.16□□□□□ -1.26
CDH3-203ENST00000542274 KLK12Q9UKR0 248 aa7.15□□□□□ -1.26
CDH3-203ENST00000542274 Q6ZQY7 126 aa7.15□□□□□ -1.26
CDH3-203ENST00000542274 COX7BP24311 80 aa7.14□□□□□ -1.27
CDH3-203ENST00000542274 STAB2Q8WWQ8 2551 aa7.14□□□□□ -1.27
CDH3-203ENST00000542274 WFDC10BQ8IUB3 73 aa7.13□□□□□ -1.27
CDH3-203ENST00000542274 CNBPP62633 177 aaKnown RBP7.13□□□□□ -1.27
CDH3-203ENST00000542274 LELP1Q5T871 98 aa7.12□□□□□ -1.27
CDH3-203ENST00000542274 KPRPQ5T749 579 aaPredicted RBP7.12□□□□□ -1.27
CDH3-203ENST00000542274 Q8IZM0 81 aa7.11□□□□□ -1.27
CDH3-203ENST00000542274 Q8NDZ9 215 aa7.1□□□□□ -1.27
CDH3-203ENST00000542274 KCNQ1DNQ9H478 68 aa7.1□□□□□ -1.27
CDH3-203ENST00000542274 DNAH9Q9NYC9 4486 aa7.1□□□□□ -1.27
CDH3-203ENST00000542274 UNQ6190/PRO20217Q6UXQ8 127 aa7.09□□□□□ -1.27
CDH3-203ENST00000542274 H3BQ85 93 aa7.09□□□□□ -1.27
CDH3-203ENST00000542274 MIR22HGQ0VDD5 57 aa7.09□□□□□ -1.27
CDH3-203ENST00000542274 DEFB131BA0A096LNP1 70 aa7.08□□□□□ -1.28
CDH3-203ENST00000542274 P0C880 135 aa7.07□□□□□ -1.28
CDH3-203ENST00000542274 PRR34Q9NV39 138 aa7.07□□□□□ -1.28
CDH3-203ENST00000542274 NOTCH2NLQ7Z3S9 236 aa7.06□□□□□ -1.28
CDH3-203ENST00000542274 H0Y9P7 68 aa7.06□□□□□ -1.28
CDH3-203ENST00000542274 DNAH10Q8IVF4 4471 aa7.05□□□□□ -1.28
CDH3-203ENST00000542274 PRKDCP78527 4128 aaKnown RBP7.05□□□□□ -1.28
CDH3-203ENST00000542274 MEGF8Q7Z7M0 2845 aa7.04□□□□□ -1.28
CDH3-203ENST00000542274 KRTAP16-1A8MUX0 517 aa7.04□□□□□ -1.28
CDH3-203ENST00000542274 REG3GQ6UW15 175 aa7.03□□□□□ -1.28
CDH3-203ENST00000542274 DNAH1Q9P2D7 4330 aa7.03□□□□□ -1.28
CDH3-203ENST00000542274 CSMD3Q7Z407 3707 aa7.03□□□□□ -1.28
CDH3-203ENST00000542274 XAGE1AQ9HD64 81 aa7.02□□□□□ -1.29
CDH3-203ENST00000542274 C6orf48Q9UBA6 75 aa7.01□□□□□ -1.29
CDH3-203ENST00000542274 DNAH7Q8WXX0 4024 aa7.01□□□□□ -1.29
CDH3-203ENST00000542274 KRTAP26-1Q6PEX3 210 aa7□□□□□ -1.29
CDH3-203ENST00000542274 TENM2Q9NT68 2774 aa7□□□□□ -1.29
CDH3-203ENST00000542274 K7EQZ3 153 aa7□□□□□ -1.29
CDH3-203ENST00000542274 C9orf163Q8N9P6 203 aa7□□□□□ -1.29
CDH3-203ENST00000542274 H3BNG1 76 aa6.99□□□□□ -1.29
CDH3-203ENST00000542274 DEFB116Q30KQ4 102 aa6.99□□□□□ -1.29
CDH3-203ENST00000542274 IGKV2D-24A0A075B6R9 120 aa6.98□□□□□ -1.29
CDH3-203ENST00000542274 C15orf56Q8N910 161 aa6.98□□□□□ -1.29
CDH3-203ENST00000542274 COX17Q14061 63 aa6.98□□□□□ -1.29
CDH3-203ENST00000542274 IGLV1-50A0A075B6I6 118 aa6.97□□□□□ -1.29
CDH3-203ENST00000542274 IGLV7-46A0A075B6I9 117 aa6.97□□□□□ -1.29
CDH3-203ENST00000542274 DSCR10P59022 87 aa6.97□□□□□ -1.29
CDH3-203ENST00000542274 CASC10Q5T4H9 136 aa6.97□□□□□ -1.29
CDH3-203ENST00000542274 CAMK2N2Q96S95 79 aa6.96□□□□□ -1.3
CDH3-203ENST00000542274 H3BPC8 53 aa6.95□□□□□ -1.3
CDH3-203ENST00000542274 PLECQ15149 4684 aaKnown RBP6.94□□□□□ -1.3
CDH3-203ENST00000542274 LINC01556Q5JQF7 62 aa6.94□□□□□ -1.3
CDH3-203ENST00000542274 TGP01266 2768 aa6.93□□□□□ -1.3
CDH3-203ENST00000542274 KRTAP21-3Q3LHN1 58 aa6.92□□□□□ -1.3
CDH3-203ENST00000542274 WFDC13Q8IUB5 93 aa6.92□□□□□ -1.3
CDH3-203ENST00000542274 SPATA8Q6RVD6 105 aa6.91□□□□□ -1.3
CDH3-203ENST00000542274 FBN3Q75N90 2809 aa6.91□□□□□ -1.3
CDH3-203ENST00000542274 GVQW2A0A096LPI5 108 aaPredicted RBP6.91□□□□□ -1.3
CDH3-203ENST00000542274 A0A1B0GW54 56 aa6.9□□□□□ -1.3
CDH3-203ENST00000542274 DNAH10OSP0CZ25 163 aa6.9□□□□□ -1.3
CDH3-203ENST00000542274 KRTAP25-1Q3LHN0 102 aa6.9□□□□□ -1.3
CDH3-203ENST00000542274 STARD9Q9P2P6 4700 aa6.9□□□□□ -1.31
CDH3-203ENST00000542274 DYNC2H1Q8NCM8 4307 aaKnown RBP6.89□□□□□ -1.31
CDH3-203ENST00000542274 PLA2G2DQ9UNK4 145 aa6.89□□□□□ -1.31
CDH3-203ENST00000542274 IGLV6-57P01721 117 aa6.89□□□□□ -1.31
CDH3-203ENST00000542274 LINC00483Q53H64 154 aa6.88□□□□□ -1.31
CDH3-203ENST00000542274 A8MWP4 228 aa6.88□□□□□ -1.31
CDH3-203ENST00000542274 CDK2AP2O75956 126 aa6.87□□□□□ -1.31
CDH3-203ENST00000542274 ZNF861PO60384 105 aa6.87□□□□□ -1.31
CDH3-203ENST00000542274 KRTAP1-5Q9BYS1 174 aa6.86□□□□□ -1.31
CDH3-203ENST00000542274 APLNQ9ULZ1 77 aa6.86□□□□□ -1.31
CDH3-203ENST00000542274 FAM168BA1KXE4 195 aa6.85□□□□□ -1.31
CDH3-203ENST00000542274 HRES1P13985 223 aa6.85□□□□□ -1.31
CDH3-203ENST00000542274 UBE2DNLQ8IWF7 75 aa6.85□□□□□ -1.31
CDH3-203ENST00000542274 SPRR4Q96PI1 79 aa6.85□□□□□ -1.31
CDH3-203ENST00000542274 NDUFAF8A1L188 74 aa6.85□□□□□ -1.31
CDH3-203ENST00000542274 PCOTHQ58A44 107 aa6.85□□□□□ -1.31
CDH3-203ENST00000542274 IGLV5-37A0A075B6J1 123 aa6.82□□□□□ -1.32
CDH3-203ENST00000542274 C20orf166-AS1Q96NR2 134 aa6.82□□□□□ -1.32
CDH3-203ENST00000542274 IGLV9-49A0A0B4J1Y8 123 aa6.82□□□□□ -1.32
CDH3-203ENST00000542274 SEC61BP60468 96 aaKnown RBP6.82□□□□□ -1.32
CDH3-203ENST00000542274 RPL37AP8A6NKH3 93 aa6.81□□□□□ -1.32
CDH3-203ENST00000542274 NUPR2A6NF83 97 aa6.8□□□□□ -1.32
CDH3-203ENST00000542274 J3QL48 77 aa6.8□□□□□ -1.32
CDH3-203ENST00000542274 CHTF8P0CG12 524 aa6.8□□□□□ -1.32
CDH3-203ENST00000542274 A8MUU9 505 aa6.8□□□□□ -1.32
CDH3-203ENST00000542274 KRTAP7-1Q8IUC3 87 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms