RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ST20-AS1Q8NBB2 130 aa8.68□□□□□ -1.02
RTN3-210ENST00000540798 CXCL6P80162 114 aa8.68□□□□□ -1.02
RTN3-210ENST00000540798 PMAIP1Q13794 54 aa8.67□□□□□ -1.02
RTN3-210ENST00000540798 UBE2BP63146 152 aa8.65□□□□□ -1.02
RTN3-210ENST00000540798 CHTF8P0CG12 524 aa8.65□□□□□ -1.03
RTN3-210ENST00000540798 HECTD4Q9Y4D8 3996 aa8.64□□□□□ -1.03
RTN3-210ENST00000540798 A0A1B0GW54 56 aa8.64□□□□□ -1.03
RTN3-210ENST00000540798 SMIM29Q86T20 159 aa8.64□□□□□ -1.03
RTN3-210ENST00000540798 KRTAP11-1Q8IUC1 163 aa8.63□□□□□ -1.03
RTN3-210ENST00000540798 HAMPP81172 84 aa8.63□□□□□ -1.03
RTN3-210ENST00000540798 DNAH2Q9P225 4427 aa8.62□□□□□ -1.03
RTN3-210ENST00000540798 PHF5AQ7RTV0 110 aaKnown RBP8.62□□□□□ -1.03
RTN3-210ENST00000540798 H0Y9J4 135 aa8.62□□□□□ -1.03
RTN3-210ENST00000540798 Q6ZR54 194 aa8.61□□□□□ -1.03
RTN3-210ENST00000540798 A0A1W2PNM2 257 aa8.6□□□□□ -1.03
RTN3-210ENST00000540798 DNAH17Q9UFH2 4485 aa8.6□□□□□ -1.03
RTN3-210ENST00000540798 DNAH6Q9C0G6 4158 aa8.6□□□□□ -1.03
RTN3-210ENST00000540798 KMT2AQ03164 3969 aa8.6□□□□□ -1.03
RTN3-210ENST00000540798 PRLHP81277 87 aa8.6□□□□□ -1.03
RTN3-210ENST00000540798 C1orf137Q5JT78 98 aa8.6□□□□□ -1.03
RTN3-210ENST00000540798 PANO1I0J062 215 aa8.59□□□□□ -1.03
RTN3-210ENST00000540798 A0A087WTM6 91 aa8.59□□□□□ -1.03
RTN3-210ENST00000540798 KLKP1Q107X0 134 aa8.59□□□□□ -1.03
RTN3-210ENST00000540798 SPRR4Q96PI1 79 aa8.59□□□□□ -1.03
RTN3-210ENST00000540798 TRAV7A0A075B6U4 112 aa8.58□□□□□ -1.04
RTN3-210ENST00000540798 BCE1O60756 84 aa8.58□□□□□ -1.04
RTN3-210ENST00000540798 Q8NBF4 154 aa8.58□□□□□ -1.04
RTN3-210ENST00000540798 IGLV8-61A0A075B6I0 122 aa8.57□□□□□ -1.04
RTN3-210ENST00000540798 SPACA4Q8TDM5 124 aa8.57□□□□□ -1.04
RTN3-210ENST00000540798 A8MU10 97 aa8.57□□□□□ -1.04
RTN3-210ENST00000540798 FUSP35637 526 aaKnown RBP eCLIP8.56□□□□□ -1.04
RTN3-210ENST00000540798 SCXQ7RTU7 201 aa8.56□□□□□ -1.04
RTN3-210ENST00000540798 C3orf84H3BNL1 204 aa8.56□□□□□ -1.04
RTN3-210ENST00000540798 NREPQ16612 68 aa8.56□□□□□ -1.04
RTN3-210ENST00000540798 SPRR1BP22528 89 aa8.55□□□□□ -1.04
RTN3-210ENST00000540798 KRTAP13-1Q8IUC0 172 aa8.55□□□□□ -1.04
RTN3-210ENST00000540798 LINC00476Q8WZB0 136 aa8.54□□□□□ -1.04
RTN3-210ENST00000540798 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.54□□□□□ -1.04
RTN3-210ENST00000540798 HIGD2AQ9BW72 106 aa8.54□□□□□ -1.04
RTN3-210ENST00000540798 IGKV4-1P06312 121 aa8.52□□□□□ -1.05
RTN3-210ENST00000540798 PSPHP1O15172 72 aa8.51□□□□□ -1.05
RTN3-210ENST00000540798 IGFL1Q6UW32 110 aa8.51□□□□□ -1.05
RTN3-210ENST00000540798 RTL8CO15255 209 aa8.5□□□□□ -1.05
RTN3-210ENST00000540798 BPY2O14599 106 aa8.49□□□□□ -1.05
RTN3-210ENST00000540798 PRR15Q8IV56 129 aa8.48□□□□□ -1.05
RTN3-210ENST00000540798 UBE2AP49459 152 aa8.48□□□□□ -1.05
RTN3-210ENST00000540798 CD164Q04900 197 aa8.48□□□□□ -1.05
RTN3-210ENST00000540798 DNAH8Q96JB1 4490 aa8.47□□□□□ -1.05
RTN3-210ENST00000540798 ALMS1Q8TCU4 4167 aa8.47□□□□□ -1.05
RTN3-210ENST00000540798 FRAS1Q86XX4 4008 aa8.47□□□□□ -1.05
RTN3-210ENST00000540798 Q8N9L7 120 aa8.47□□□□□ -1.05
RTN3-210ENST00000540798 C1orf134Q5TEV5 83 aa8.46□□□□□ -1.06
RTN3-210ENST00000540798 PLAC8Q9NZF1 115 aa8.46□□□□□ -1.06
RTN3-210ENST00000540798 TMEM254Q8TBM7 123 aa8.45□□□□□ -1.06
RTN3-210ENST00000540798 A0A0G2JQZ4 141 aa8.45□□□□□ -1.06
RTN3-210ENST00000540798 SRRM2Q9UQ35 2752 aaKnown RBP8.44□□□□□ -1.06
RTN3-210ENST00000540798 DSCR10P59022 87 aa8.43□□□□□ -1.06
RTN3-210ENST00000540798 DNAH11Q96DT5 4516 aa8.42□□□□□ -1.06
RTN3-210ENST00000540798 C4orf48Q5BLP8 95 aa8.42□□□□□ -1.06
RTN3-210ENST00000540798 RBM12B-AS1Q9P1G2 102 aa8.42□□□□□ -1.06
RTN3-210ENST00000540798 IGLV5-52A0A0A0MRZ9 124 aa8.41□□□□□ -1.06
RTN3-210ENST00000540798 LY6G6CO95867 125 aa8.4□□□□□ -1.06
RTN3-210ENST00000540798 LINC00483Q53H64 154 aa8.4□□□□□ -1.06
RTN3-210ENST00000540798 DNAH5Q8TE73 4624 aa8.4□□□□□ -1.06
RTN3-210ENST00000540798 NDUFC1O43677 76 aa8.39□□□□□ -1.07
RTN3-210ENST00000540798 PRR4Q16378 134 aa8.38□□□□□ -1.07
RTN3-210ENST00000540798 PSORS1C2Q9UIG4 136 aa8.38□□□□□ -1.07
RTN3-210ENST00000540798 WWC2-AS2Q96NR7 200 aa8.38□□□□□ -1.07
RTN3-210ENST00000540798 OCR1Q9BZK8 76 aa8.38□□□□□ -1.07
RTN3-210ENST00000540798 A0A087WSZ3 146 aa8.38□□□□□ -1.07
RTN3-210ENST00000540798 ATP5EP56381 51 aaPredicted RBP8.38□□□□□ -1.07
RTN3-210ENST00000540798 K7EQZ3 153 aa8.36□□□□□ -1.07
RTN3-210ENST00000540798 PKD1P98161 4303 aa8.35□□□□□ -1.07
RTN3-210ENST00000540798 A8MUN3 132 aa8.34□□□□□ -1.07
RTN3-210ENST00000540798 FAT2Q9NYQ8 4349 aa8.33□□□□□ -1.08
RTN3-210ENST00000540798 RPL37AP61513 92 aaKnown RBP8.33□□□□□ -1.08
RTN3-210ENST00000540798 ZNF706Q9Y5V0 76 aaPredicted RBP8.33□□□□□ -1.08
RTN3-210ENST00000540798 ZNF861PO60384 105 aa8.33□□□□□ -1.08
RTN3-210ENST00000540798 TRAV22A0A0B4J277 110 aa8.32□□□□□ -1.08
RTN3-210ENST00000540798 SPTSSBQ8NFR3 76 aa8.32□□□□□ -1.08
RTN3-210ENST00000540798 HYDINQ4G0P3 5121 aa8.32□□□□□ -1.08
RTN3-210ENST00000540798 LINC00472Q9H8W2 130 aa8.32□□□□□ -1.08
RTN3-210ENST00000540798 hDV103S1A0JD37 113 aa8.32□□□□□ -1.08
RTN3-210ENST00000540798 C1orf64Q8NEQ6 169 aa8.31□□□□□ -1.08
RTN3-210ENST00000540798 KRTAP10-2P60368 255 aa8.3□□□□□ -1.08
RTN3-210ENST00000540798 LCE6AA0A183 80 aa8.29□□□□□ -1.08
RTN3-210ENST00000540798 DEFB116Q30KQ4 102 aa8.29□□□□□ -1.08
RTN3-210ENST00000540798 HCG22E2RYF7 251 aa8.29□□□□□ -1.08
RTN3-210ENST00000540798 IGLV9-49A0A0B4J1Y8 123 aa8.27□□□□□ -1.09
RTN3-210ENST00000540798 IGLV7-43P04211 117 aa8.27□□□□□ -1.09
RTN3-210ENST00000540798 Q1T7F1 81 aa8.26□□□□□ -1.09
RTN3-210ENST00000540798 Q6ZSA8 131 aa8.26□□□□□ -1.09
RTN3-210ENST00000540798 FAM30AQ9NZY2 134 aa8.26□□□□□ -1.09
RTN3-210ENST00000540798 KTN1-AS1Q86SY8 53 aa8.26□□□□□ -1.09
RTN3-210ENST00000540798 A8MWP4 228 aa8.25□□□□□ -1.09
RTN3-210ENST00000540798 CIRBP-AS1Q8TBR5 109 aa8.25□□□□□ -1.09
RTN3-210ENST00000540798 KRTAP29-1A8MX34 341 aaPredicted RBP8.24□□□□□ -1.09
RTN3-210ENST00000540798 Q96NJ1 140 aa8.24□□□□□ -1.09
RTN3-210ENST00000540798 H3BS24 57 aa8.23□□□□□ -1.09
RTN3-210ENST00000540798 KMT2CQ8NEZ4 4911 aaKnown RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 155.6 ms