RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 KRTAP4-16G5E9R7 235 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-233ENST00000535896 Q6ZTC4 211 aa4.11□□□□□ -1.75
SYNE1-233ENST00000535896 Q8N377 158 aa4.11□□□□□ -1.75
SYNE1-233ENST00000535896 Q8NBF4 154 aa4.11□□□□□ -1.75
SYNE1-233ENST00000535896 C7orf33Q8WU49 177 aa4.11□□□□□ -1.75
SYNE1-233ENST00000535896 KRTAP3-1Q9BYR8 98 aa4.11□□□□□ -1.75
SYNE1-233ENST00000535896 IGLV1-50A0A075B6I6 118 aa4.1□□□□□ -1.75
SYNE1-233ENST00000535896 IGKV2D-24A0A075B6R9 120 aa4.1□□□□□ -1.75
SYNE1-233ENST00000535896 ETDCA0A1B0GVM5 59 aa4.1□□□□□ -1.75
SYNE1-233ENST00000535896 ESRGQ1W209 222 aa4.1□□□□□ -1.75
SYNE1-233ENST00000535896 RETNQ9HD89 108 aa4.1□□□□□ -1.75
SYNE1-233ENST00000535896 RPL37AP8A6NKH3 93 aa4.09□□□□□ -1.75
SYNE1-233ENST00000535896 C4orf26Q17RF5 130 aa4.09□□□□□ -1.75
SYNE1-233ENST00000535896 C1orf137Q5JT78 98 aa4.09□□□□□ -1.75
SYNE1-233ENST00000535896 SNURFQ9Y675 71 aa4.09□□□□□ -1.75
SYNE1-233ENST00000535896 DYNC2H1Q8NCM8 4307 aaKnown RBP4.08□□□□□ -1.76
SYNE1-233ENST00000535896 DEFB131BA0A096LNP1 70 aa4.08□□□□□ -1.76
SYNE1-233ENST00000535896 SERTAD4-AS1Q5TG53 156 aa4.08□□□□□ -1.76
SYNE1-233ENST00000535896 HRCT1Q6UXD1 115 aa4.08□□□□□ -1.76
SYNE1-233ENST00000535896 SCXQ7RTU7 201 aa4.08□□□□□ -1.76
SYNE1-233ENST00000535896 C11orf45Q8TAV5 145 aa4.08□□□□□ -1.76
SYNE1-233ENST00000535896 WWC2-AS2Q96NR7 200 aa4.08□□□□□ -1.76
SYNE1-233ENST00000535896 PRO0628Q9UI54 55 aa4.08□□□□□ -1.76
SYNE1-233ENST00000535896 IGLV8-61A0A075B6I0 122 aa4.07□□□□□ -1.76
SYNE1-233ENST00000535896 MRPL55Q7Z7F7 128 aaKnown RBP4.07□□□□□ -1.76
SYNE1-233ENST00000535896 Q9BRP9 147 aa4.07□□□□□ -1.76
SYNE1-233ENST00000535896 PKIGQ9Y2B9 76 aa4.07□□□□□ -1.76
SYNE1-233ENST00000535896 A0A1W2PNM2 257 aa4.06□□□□□ -1.76
SYNE1-233ENST00000535896 C3orf84H3BNL1 204 aa4.06□□□□□ -1.76
SYNE1-233ENST00000535896 NDUFB1O75438 58 aa4.06□□□□□ -1.76
SYNE1-233ENST00000535896 FP248Q71RG6 208 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-233ENST00000535896 Q8N1X5 172 aa4.06□□□□□ -1.76
SYNE1-233ENST00000535896 V9GYY9 64 aa4.06□□□□□ -1.76
SYNE1-233ENST00000535896 CSMD3Q7Z407 3707 aa4.05□□□□□ -1.76
SYNE1-233ENST00000535896 PLECQ15149 4684 aaKnown RBP4.05□□□□□ -1.76
SYNE1-233ENST00000535896 STARD9Q9P2P6 4700 aa4.05□□□□□ -1.76
SYNE1-233ENST00000535896 H3BPC8 53 aa4.04□□□□□ -1.76
SYNE1-233ENST00000535896 REG3GQ6UW15 175 aa4.04□□□□□ -1.76
SYNE1-233ENST00000535896 SMIM29Q86T20 159 aa4.04□□□□□ -1.76
SYNE1-233ENST00000535896 Q8N9L7 120 aa4.04□□□□□ -1.76
SYNE1-233ENST00000535896 ZCCHC13Q8WW36 166 aaKnown RBP4.04□□□□□ -1.76
SYNE1-233ENST00000535896 TENM2Q9NT68 2774 aa4.03□□□□□ -1.76
SYNE1-233ENST00000535896 HCG22E2RYF7 251 aa4.03□□□□□ -1.76
SYNE1-233ENST00000535896 H0Y9J4 135 aa4.03□□□□□ -1.76
SYNE1-233ENST00000535896 DSCR10P59022 87 aa4.03□□□□□ -1.76
SYNE1-233ENST00000535896 CNBPP62633 177 aaKnown RBP4.03□□□□□ -1.76
SYNE1-233ENST00000535896 DEFB105AQ8NG35 78 aa4.03□□□□□ -1.76
SYNE1-233ENST00000535896 CYP4F30PQ9H0H9 118 aa4.03□□□□□ -1.76
SYNE1-233ENST00000535896 NUPR2A6NF83 97 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 LINC00588Q9Y4M8 146 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 DNAH1Q9P2D7 4330 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 ALMS1Q8TCU4 4167 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 C16orf90A8MZG2 172 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 SPRR1BP22528 89 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 UBE2BP63146 152 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 C14orf177Q52M58 125 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 LINC00476Q8WZB0 136 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 HIGD2AQ9BW72 106 aa4.02□□□□□ -1.77
SYNE1-233ENST00000535896 hDV103S1A0JD37 113 aa4.01□□□□□ -1.77
SYNE1-233ENST00000535896 Q1T7F1 81 aa4.01□□□□□ -1.77
SYNE1-233ENST00000535896 LINC00336Q6ZUF6 198 aa4.01□□□□□ -1.77
SYNE1-233ENST00000535896 KRTAP7-1Q8IUC3 87 aa4.01□□□□□ -1.77
SYNE1-233ENST00000535896 FAM168BA1KXE4 195 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 K7EQZ3 153 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 PSCAO43653 123 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 MP68P56378 58 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 CASC10Q5T4H9 136 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 IGFL1Q6UW32 110 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 SPANXA2-OT1Q8N9U9 137 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 ST20-AS1Q8NBB2 130 aa4□□□□□ -1.77
SYNE1-233ENST00000535896 VPS13DQ5THJ4 4388 aa3.99□□□□□ -1.77
SYNE1-233ENST00000535896 SACSQ9NZJ4 4579 aa3.99□□□□□ -1.77
SYNE1-233ENST00000535896 LYSTQ99698 3801 aa3.99□□□□□ -1.77
SYNE1-233ENST00000535896 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-233ENST00000535896 RPL37AP61513 92 aaKnown RBP3.98□□□□□ -1.77
SYNE1-233ENST00000535896 DNAH6Q9C0G6 4158 aa3.98□□□□□ -1.77
SYNE1-233ENST00000535896 KMT2CQ8NEZ4 4911 aaKnown RBP3.97□□□□□ -1.77
SYNE1-233ENST00000535896 TRAV22A0A0B4J277 110 aa3.97□□□□□ -1.77
SYNE1-233ENST00000535896 KRTAP29-1A8MX34 341 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-233ENST00000535896 LINC00474Q9P2X8 69 aa3.97□□□□□ -1.77
SYNE1-233ENST00000535896 FAM229BQ4G0N7 80 aa3.96□□□□□ -1.78
SYNE1-233ENST00000535896 C1orf64Q8NEQ6 169 aa3.96□□□□□ -1.78
SYNE1-233ENST00000535896 A0A087WSZ3 146 aa3.95□□□□□ -1.78
SYNE1-233ENST00000535896 A0A096LNI7 61 aa3.95□□□□□ -1.78
SYNE1-233ENST00000535896 A8MWP4 228 aa3.95□□□□□ -1.78
SYNE1-233ENST00000535896 UBE2AP49459 152 aa3.95□□□□□ -1.78
SYNE1-233ENST00000535896 C1orf195Q5TG92 126 aa3.95□□□□□ -1.78
SYNE1-233ENST00000535896 PRR15Q8IV56 129 aa3.95□□□□□ -1.78
SYNE1-233ENST00000535896 APLNQ9ULZ1 77 aa3.95□□□□□ -1.78
SYNE1-233ENST00000535896 BRK1Q8WUW1 75 aa3.94□□□□□ -1.78
SYNE1-233ENST00000535896 RYR2Q92736 4967 aa3.94□□□□□ -1.78
SYNE1-233ENST00000535896 KRTAP23-1A1A580 65 aa3.93□□□□□ -1.78
SYNE1-233ENST00000535896 PRLHP81277 87 aa3.93□□□□□ -1.78
SYNE1-233ENST00000535896 MOBPQ13875 183 aa3.93□□□□□ -1.78
SYNE1-233ENST00000535896 CASC2Q6XLA1 102 aa3.93□□□□□ -1.78
SYNE1-233ENST00000535896 LINC00472Q9H8W2 130 aa3.93□□□□□ -1.78
SYNE1-233ENST00000535896 KMT2AQ03164 3969 aa3.92□□□□□ -1.78
SYNE1-233ENST00000535896 UBE2DNLQ8IWF7 75 aa3.92□□□□□ -1.78
SYNE1-233ENST00000535896 MPLKIPQ8TAP9 179 aa3.92□□□□□ -1.78
SYNE1-233ENST00000535896 TP53AIP1Q9HCN2 124 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms