RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 IGLV7-46A0A075B6I9 117 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 IGHV7-4-1A0A0J9YVY3 117 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 BPY2O14599 106 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 APELAP0DMC3 54 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 POLR2KP53803 58 aaKnown RBP3.63□□□□□ -1.83
NUP54-218ENST00000515460 LYZP61626 148 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 CASC2Q6XLA1 102 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 MIR7-3HGQ8N6C7 128 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 USMG5Q96IX5 58 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 CDC42SE2Q9NRR3 84 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 LENEPQ9Y5L5 61 aa3.63□□□□□ -1.83
NUP54-218ENST00000515460 PKHD1L1Q86WI1 4243 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 IGHV6-1A0A0B4J1U7 121 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 A0A0J9YXV3 536 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 A6NED7 52 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 FAM74A4Q5TZK3 123 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 Q9BRP9 147 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 OCR1Q9BZK8 76 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 VPS13BQ7Z7G8 4022 aa3.62□□□□□ -1.83
NUP54-218ENST00000515460 K7EQG2 157 aa3.61□□□□□ -1.83
NUP54-218ENST00000515460 NCR3O14931 201 aa3.61□□□□□ -1.83
NUP54-218ENST00000515460 RPL27AP46776 148 aaKnown RBP3.61□□□□□ -1.83
NUP54-218ENST00000515460 PRAC1Q96KF2 57 aa3.61□□□□□ -1.83
NUP54-218ENST00000515460 SORL1Q92673 2214 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 IGHV1OR15-1A0A075B7D0 117 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 IGKV2-40A0A087WW87 121 aaPredicted RBP3.6□□□□□ -1.83
NUP54-218ENST00000515460 CDK2AP2O75956 126 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 IGKV2D-40P01614 121 aaPredicted RBP3.6□□□□□ -1.83
NUP54-218ENST00000515460 IGHV3-23P01764 117 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 DSCR10P59022 87 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 WT1-ASQ06250 92 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 MOBPQ13875 183 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 KLK9Q2XQG4 91 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 C10orf55Q5SWW7 151 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 RPL39LQ96EH5 51 aaKnown RBP3.6□□□□□ -1.83
NUP54-218ENST00000515460 KLK9Q9UKQ9 250 aa3.6□□□□□ -1.83
NUP54-218ENST00000515460 ZNF706Q9Y5V0 76 aaPredicted RBP3.6□□□□□ -1.83
NUP54-218ENST00000515460 IGLV4-3A0A075B6K6 122 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 TRBV10-1A0A0K0K1A3 114 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 LECT2O14960 151 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 Q6ZQT0 140 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 C20orf203Q8NBC4 194 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 PRR15LQ9BU68 103 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 S4R3C0 116 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 OBSCNQ5VST9 7968 aa3.59□□□□□ -1.83
NUP54-218ENST00000515460 IGHV3-64A0A075B6Q5 118 aa3.58□□□□□ -1.84
NUP54-218ENST00000515460 IGKV2-29A2NJV5 120 aaPredicted RBP3.58□□□□□ -1.84
NUP54-218ENST00000515460 NUPR2A6NF83 97 aa3.58□□□□□ -1.84
NUP54-218ENST00000515460 MGPP08493 103 aa3.58□□□□□ -1.84
NUP54-218ENST00000515460 HAMPP81172 84 aa3.58□□□□□ -1.84
NUP54-218ENST00000515460 C9orf129Q5T035 196 aaKnown RBP3.58□□□□□ -1.84
NUP54-218ENST00000515460 SPANXA2-OT1Q8N9U9 137 aa3.58□□□□□ -1.84
NUP54-218ENST00000515460 ZCCHC13Q8WW36 166 aaKnown RBP3.58□□□□□ -1.84
NUP54-218ENST00000515460 CELA1Q9UNI1 258 aa3.58□□□□□ -1.84
NUP54-218ENST00000515460 IGLV11-55A0A075B6I3 123 aa3.57□□□□□ -1.84
NUP54-218ENST00000515460 IGHV3-35A0A0C4DH35 117 aa3.57□□□□□ -1.84
NUP54-218ENST00000515460 RPL39P62891 51 aaKnown RBP3.57□□□□□ -1.84
NUP54-218ENST00000515460 DEFB135Q30KP9 77 aa3.57□□□□□ -1.84
NUP54-218ENST00000515460 Q8TAT8 98 aa3.57□□□□□ -1.84
NUP54-218ENST00000515460 RETNLBQ9BQ08 111 aa3.57□□□□□ -1.84
NUP54-218ENST00000515460 SMIM11BQ8TCY0 68 aa3.56□□□□□ -1.84
NUP54-218ENST00000515460 HIGD2AQ9BW72 106 aa3.56□□□□□ -1.84
NUP54-218ENST00000515460 LRP1Q07954 4544 aaKnown RBP3.56□□□□□ -1.84
NUP54-218ENST00000515460 A8MU10 97 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 I3L2K1 104 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 IGKV1-17P01599 117 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 LELP1Q5T871 98 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 LINC00208Q96KT6 92 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 LINC00467Q9BRT7 94 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 XAGE1AQ9HD64 81 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 APLNQ9ULZ1 77 aa3.55□□□□□ -1.84
NUP54-218ENST00000515460 IGHV3OR16-8A0A075B7F1 116 aa3.54□□□□□ -1.84
NUP54-218ENST00000515460 IGHV3-21A0A0B4J1V1 117 aa3.54□□□□□ -1.84
NUP54-218ENST00000515460 IGHV3-16A0A0C4DH30 117 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 H3BPC8 53 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 NDUFA4O00483 81 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 DEFB4AO15263 64 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 LINC00315P59091 139 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 NTM-AS1Q6ZSK4 140 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 Q8N814 137 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 SND1-IT1Q9HBX3 110 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 LINC01558Q9Y6Z2 57 aa3.53□□□□□ -1.84
NUP54-218ENST00000515460 FAT3Q8TDW7 4589 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3-49A0A0A0MS15 119 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3-73A0A0B4J1V6 119 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3-38A0A0C4DH36 116 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 LRCOL1A6NCL2 159 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 K7EIM0 57 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3-48P01763 117 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 IGKV4-1P06312 121 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 GIG44P09565 113 aaPredicted RBP3.52□□□□□ -1.85
NUP54-218ENST00000515460 RNASE13Q5GAN3 156 aaKnown RBP3.52□□□□□ -1.85
NUP54-218ENST00000515460 LCE3EQ5T5B0 92 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 CHCHD10Q8WYQ3 142 aaPredicted RBP3.52□□□□□ -1.85
NUP54-218ENST00000515460 RHPN1-AS1Q9BWJ2 59 aa3.52□□□□□ -1.85
NUP54-218ENST00000515460 TNCP24821 2201 aa3.51□□□□□ -1.85
NUP54-218ENST00000515460 IGKV3-7A0A075B6H7 116 aa3.51□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3OR16-13A0A075B7E8 117 aa3.51□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3-74A0A0B4J1X5 117 aa3.51□□□□□ -1.85
NUP54-218ENST00000515460 ETDCA0A1B0GVM5 59 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms