RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 DNAH7Q8WXX0 4024 aa7.5□□□□□ -1.21
NUP54-202ENST00000502850 NDUFC1O43677 76 aa7.5□□□□□ -1.21
NUP54-202ENST00000502850 CHTF8P0CG12 524 aa7.5□□□□□ -1.21
NUP54-202ENST00000502850 EPM2AB3EWF7 344 aa7.49□□□□□ -1.21
NUP54-202ENST00000502850 IGFL1Q6UW32 110 aa7.49□□□□□ -1.21
NUP54-202ENST00000502850 CYSTM1Q9H1C7 97 aa7.49□□□□□ -1.21
NUP54-202ENST00000502850 Q8N9L7 120 aa7.47□□□□□ -1.21
NUP54-202ENST00000502850 CSMD3Q7Z407 3707 aa7.47□□□□□ -1.21
NUP54-202ENST00000502850 SPACA4Q8TDM5 124 aa7.46□□□□□ -1.21
NUP54-202ENST00000502850 DNAH10Q8IVF4 4471 aa7.45□□□□□ -1.22
NUP54-202ENST00000502850 A0A087WTM6 91 aa7.45□□□□□ -1.22
NUP54-202ENST00000502850 FAM236DA0A1B0GTK5 79 aa7.45□□□□□ -1.22
NUP54-202ENST00000502850 FAM236CP0DP71 79 aa7.45□□□□□ -1.22
NUP54-202ENST00000502850 DPH3Q96FX2 82 aa7.45□□□□□ -1.22
NUP54-202ENST00000502850 ATP5EP56381 51 aaPredicted RBP7.44□□□□□ -1.22
NUP54-202ENST00000502850 OCR1Q9BZK8 76 aa7.44□□□□□ -1.22
NUP54-202ENST00000502850 H7BZZ5 65 aa7.43□□□□□ -1.22
NUP54-202ENST00000502850 STARD9Q9P2P6 4700 aa7.42□□□□□ -1.22
NUP54-202ENST00000502850 DSCR10P59022 87 aa7.42□□□□□ -1.22
NUP54-202ENST00000502850 KRTAP13-1Q8IUC0 172 aa7.42□□□□□ -1.22
NUP54-202ENST00000502850 TMEM254Q8TBM7 123 aa7.42□□□□□ -1.22
NUP54-202ENST00000502850 PLECQ15149 4684 aaKnown RBP7.41□□□□□ -1.22
NUP54-202ENST00000502850 KRTAP11-1Q8IUC1 163 aa7.41□□□□□ -1.22
NUP54-202ENST00000502850 ZNF706Q9Y5V0 76 aaPredicted RBP7.41□□□□□ -1.22
NUP54-202ENST00000502850 RYR2Q92736 4967 aa7.41□□□□□ -1.22
NUP54-202ENST00000502850 A0A087WSZ3 146 aa7.41□□□□□ -1.22
NUP54-202ENST00000502850 Q6ZR54 194 aa7.41□□□□□ -1.22
NUP54-202ENST00000502850 LYSTQ99698 3801 aa7.4□□□□□ -1.22
NUP54-202ENST00000502850 K7EQZ3 153 aa7.4□□□□□ -1.22
NUP54-202ENST00000502850 RTL8CO15255 209 aa7.4□□□□□ -1.22
NUP54-202ENST00000502850 LY6G6CO95867 125 aa7.4□□□□□ -1.22
NUP54-202ENST00000502850 RPL37AP61513 92 aaKnown RBP7.4□□□□□ -1.22
NUP54-202ENST00000502850 SNURFQ9Y675 71 aa7.4□□□□□ -1.22
NUP54-202ENST00000502850 HCG22E2RYF7 251 aa7.39□□□□□ -1.23
NUP54-202ENST00000502850 VPS13DQ5THJ4 4388 aa7.39□□□□□ -1.23
NUP54-202ENST00000502850 LCE2DQ5TA82 110 aaPredicted RBP7.38□□□□□ -1.23
NUP54-202ENST00000502850 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.38□□□□□ -1.23
NUP54-202ENST00000502850 PANO1I0J062 215 aa7.38□□□□□ -1.23
NUP54-202ENST00000502850 A0A0U1RQV1 116 aa7.37□□□□□ -1.23
NUP54-202ENST00000502850 SERP1Q9Y6X1 66 aa7.37□□□□□ -1.23
NUP54-202ENST00000502850 C1orf134Q5TEV5 83 aa7.36□□□□□ -1.23
NUP54-202ENST00000502850 PLAC8Q9NZF1 115 aa7.36□□□□□ -1.23
NUP54-202ENST00000502850 SACSQ9NZJ4 4579 aa7.36□□□□□ -1.23
NUP54-202ENST00000502850 LINC00483Q53H64 154 aa7.35□□□□□ -1.23
NUP54-202ENST00000502850 IGLV5-52A0A0A0MRZ9 124 aa7.34□□□□□ -1.23
NUP54-202ENST00000502850 C5orf47Q569G3 176 aa7.34□□□□□ -1.24
NUP54-202ENST00000502850 FAM30AQ9NZY2 134 aa7.34□□□□□ -1.24
NUP54-202ENST00000502850 A0A0G2JQZ4 141 aa7.33□□□□□ -1.24
NUP54-202ENST00000502850 HYDINQ4G0P3 5121 aa7.32□□□□□ -1.24
NUP54-202ENST00000502850 A8MWP4 228 aa7.32□□□□□ -1.24
NUP54-202ENST00000502850 LINC00472Q9H8W2 130 aa7.31□□□□□ -1.24
NUP54-202ENST00000502850 PRR15Q8IV56 129 aa7.3□□□□□ -1.24
NUP54-202ENST00000502850 ZNF861PO60384 105 aa7.3□□□□□ -1.24
NUP54-202ENST00000502850 PSORS1C2Q9UIG4 136 aa7.3□□□□□ -1.24
NUP54-202ENST00000502850 ALMS1Q8TCU4 4167 aa7.29□□□□□ -1.24
NUP54-202ENST00000502850 NDUFB1O75438 58 aa7.29□□□□□ -1.24
NUP54-202ENST00000502850 DEFB116Q30KQ4 102 aa7.28□□□□□ -1.24
NUP54-202ENST00000502850 EPPK1P58107 5090 aaKnown RBP7.27□□□□□ -1.25
NUP54-202ENST00000502850 IGLV9-49A0A0B4J1Y8 123 aa7.27□□□□□ -1.25
NUP54-202ENST00000502850 MP68P56378 58 aa7.27□□□□□ -1.25
NUP54-202ENST00000502850 CASC2Q6XLA1 102 aa7.27□□□□□ -1.25
NUP54-202ENST00000502850 WFDC13Q8IUB5 93 aa7.27□□□□□ -1.25
NUP54-202ENST00000502850 KRTAP29-1A8MX34 341 aaPredicted RBP7.26□□□□□ -1.25
NUP54-202ENST00000502850 H3BPC8 53 aa7.26□□□□□ -1.25
NUP54-202ENST00000502850 OXTP01178 125 aa7.26□□□□□ -1.25
NUP54-202ENST00000502850 DNAH17Q9UFH2 4485 aa7.25□□□□□ -1.25
NUP54-202ENST00000502850 ZCCHC13Q8WW36 166 aaKnown RBP7.25□□□□□ -1.25
NUP54-202ENST00000502850 BIRC6Q9NR09 4857 aa7.24□□□□□ -1.25
NUP54-202ENST00000502850 SMIM26A0A096LP01 95 aa7.23□□□□□ -1.25
NUP54-202ENST00000502850 SVIPQ8NHG7 77 aa7.23□□□□□ -1.25
NUP54-202ENST00000502850 MOBPQ13875 183 aa7.23□□□□□ -1.25
NUP54-202ENST00000502850 IGLV7-43P04211 117 aa7.22□□□□□ -1.25
NUP54-202ENST00000502850 HECTD4Q9Y4D8 3996 aa7.21□□□□□ -1.26
NUP54-202ENST00000502850 CDK2AP2O75956 126 aa7.2□□□□□ -1.26
NUP54-202ENST00000502850 KMT2AQ03164 3969 aa7.2□□□□□ -1.26
NUP54-202ENST00000502850 DNAH6Q9C0G6 4158 aa7.2□□□□□ -1.26
NUP54-202ENST00000502850 MMP24-AS1A0A0U1RRL7 71 aa7.19□□□□□ -1.26
NUP54-202ENST00000502850 DNAH2Q9P225 4427 aa7.19□□□□□ -1.26
NUP54-202ENST00000502850 Q96NJ1 140 aa7.19□□□□□ -1.26
NUP54-202ENST00000502850 TP53AIP1Q9HCN2 124 aa7.19□□□□□ -1.26
NUP54-202ENST00000502850 hDV103S1A0JD37 113 aa7.18□□□□□ -1.26
NUP54-202ENST00000502850 CD164Q04900 197 aa7.18□□□□□ -1.26
NUP54-202ENST00000502850 H0Y9P7 68 aa7.17□□□□□ -1.26
NUP54-202ENST00000502850 Q5XG85 94 aa7.16□□□□□ -1.26
NUP54-202ENST00000502850 LINC00336Q6ZUF6 198 aa7.16□□□□□ -1.26
NUP54-202ENST00000502850 SRRM2Q9UQ35 2752 aaKnown RBP7.16□□□□□ -1.26
NUP54-202ENST00000502850 TRAV22A0A0B4J277 110 aa7.16□□□□□ -1.26
NUP54-202ENST00000502850 A0A1B0GVX0 72 aa7.16□□□□□ -1.26
NUP54-202ENST00000502850 SSBP3-AS1Q7Z2R9 100 aa7.16□□□□□ -1.26
NUP54-202ENST00000502850 FRAS1Q86XX4 4008 aa7.15□□□□□ -1.26
NUP54-202ENST00000502850 ASB16-AS1Q495Z4 193 aa7.15□□□□□ -1.27
NUP54-202ENST00000502850 HRCT1Q6UXD1 115 aa7.15□□□□□ -1.27
NUP54-202ENST00000502850 CYP4F30PQ9H0H9 118 aa7.15□□□□□ -1.27
NUP54-202ENST00000502850 C8orf17Q9NRJ1 99 aa7.15□□□□□ -1.27
NUP54-202ENST00000502850 LINC00208Q96KT6 92 aa7.14□□□□□ -1.27
NUP54-202ENST00000502850 SPANXA2-OT1Q8N9U9 137 aa7.13□□□□□ -1.27
NUP54-202ENST00000502850 CIRBP-AS1Q8TBR5 109 aa7.13□□□□□ -1.27
NUP54-202ENST00000502850 Q6ZSA8 131 aa7.12□□□□□ -1.27
NUP54-202ENST00000502850 DNAH8Q96JB1 4490 aa7.12□□□□□ -1.27
NUP54-202ENST00000502850 A0A1B0GVY2 172 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms