RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 SNHG12Q9BXW3 62 aa-1.69□□□□□ -2.68
SMC4-223ENST00000493695 TRAV21A0A0B4J279 112 aa-1.7□□□□□ -2.68
SMC4-223ENST00000493695 PEA15Q15121 130 aa-1.7□□□□□ -2.68
SMC4-223ENST00000493695 DOT1LQ8TEK3 1739 aa-1.7□□□□□ -2.68
SMC4-223ENST00000493695 RGPD3A6NKT7 1758 aaPredicted RBP-1.7□□□□□ -2.68
SMC4-223ENST00000493695 RGPD4Q7Z3J3 1758 aa-1.7□□□□□ -2.68
SMC4-223ENST00000493695 RYR1P21817 5038 aa-1.71□□□□□ -2.68
SMC4-223ENST00000493695 RELNP78509 3460 aa-1.71□□□□□ -2.68
SMC4-223ENST00000493695 CYB5AP00167 134 aa-1.71□□□□□ -2.68
SMC4-223ENST00000493695 C3orf79P0CE67 100 aa-1.71□□□□□ -2.68
SMC4-223ENST00000493695 MAP3K1Q13233 1512 aa-1.71□□□□□ -2.68
SMC4-223ENST00000493695 ANKRD50Q9ULJ7 1429 aa-1.72□□□□□ -2.68
SMC4-223ENST00000493695 PRO3102Q9H379 93 aa-1.72□□□□□ -2.68
SMC4-223ENST00000493695 ZNF831Q5JPB2 1677 aa-1.73□□□□□ -2.69
SMC4-223ENST00000493695 DEPDC5O75140 1603 aa-1.74□□□□□ -2.69
SMC4-223ENST00000493695 TEX15Q9BXT5 2789 aa-1.75□□□□□ -2.69
SMC4-223ENST00000493695 SACSQ9NZJ4 4579 aa-1.75□□□□□ -2.69
SMC4-223ENST00000493695 A0A0C4DFX4 3053 aa-1.76□□□□□ -2.69
SMC4-223ENST00000493695 TRIOO75962 3097 aa-1.76□□□□□ -2.69
SMC4-223ENST00000493695 RANBP2P49792 3224 aaKnown RBP-1.76□□□□□ -2.69
SMC4-223ENST00000493695 NBEAL2Q6ZNJ1 2754 aa-1.76□□□□□ -2.69
SMC4-223ENST00000493695 LCE6AA0A183 80 aa-1.76□□□□□ -2.69
SMC4-223ENST00000493695 MYMXA0A1B0GTQ4 84 aa-1.76□□□□□ -2.69
SMC4-223ENST00000493695 LINC00158P58513 81 aa-1.76□□□□□ -2.69
SMC4-223ENST00000493695 WFDC9Q8NEX5 89 aa-1.76□□□□□ -2.69
SMC4-223ENST00000493695 KIAA1109Q2LD37 5005 aa-1.77□□□□□ -2.69
SMC4-223ENST00000493695 H0YAA0 97 aa-1.77□□□□□ -2.69
SMC4-223ENST00000493695 PKIAP61925 76 aa-1.77□□□□□ -2.69
SMC4-223ENST00000493695 FAM186AA6NE01 2351 aa-1.77□□□□□ -2.69
SMC4-223ENST00000493695 LAMA3Q16787 3333 aa-1.77□□□□□ -2.69
SMC4-223ENST00000493695 ACACAQ13085 2346 aa-1.78□□□□□ -2.69
SMC4-223ENST00000493695 S100A8P05109 93 aa-1.78□□□□□ -2.69
SMC4-223ENST00000493695 CEP290O15078 2479 aa-1.78□□□□□ -2.69
SMC4-223ENST00000493695 MAGI3Q5TCQ9 1506 aa-1.79□□□□□ -2.7
SMC4-223ENST00000493695 PRLHP81277 87 aa-1.79□□□□□ -2.7
SMC4-223ENST00000493695 RABAC1Q9UI14 185 aa-1.79□□□□□ -2.7
SMC4-223ENST00000493695 DIP2BQ9P265 1576 aa-1.8□□□□□ -2.7
SMC4-223ENST00000493695 LAMA2P24043 3122 aaKnown RBP-1.8□□□□□ -2.7
SMC4-223ENST00000493695 NDUFB1O75438 58 aa-1.8□□□□□ -2.7
SMC4-223ENST00000493695 NCOA2Q15596 1464 aa-1.81□□□□□ -2.7
SMC4-223ENST00000493695 PKD1L2Q7Z442 2459 aa-1.81□□□□□ -2.7
SMC4-223ENST00000493695 LYNX1G3V0Z9 82 aa-1.82□□□□□ -2.7
SMC4-223ENST00000493695 PYY3Q5JQD4 70 aa-1.82□□□□□ -2.7
SMC4-223ENST00000493695 URB2Q14146 1524 aaKnown RBP-1.82□□□□□ -2.7
SMC4-223ENST00000493695 PLIN4Q96Q06 1357 aa-1.83□□□□□ -2.7
SMC4-223ENST00000493695 SNRPFP62306 86 aaKnown RBP-1.83□□□□□ -2.7
SMC4-223ENST00000493695 LINC00643Q86TS7 51 aa-1.83□□□□□ -2.7
SMC4-223ENST00000493695 ABCC3O15438 1527 aa-1.83□□□□□ -2.7
SMC4-223ENST00000493695 DNAH8Q96JB1 4490 aa-1.83□□□□□ -2.7
SMC4-223ENST00000493695 PLECQ15149 4684 aaKnown RBP-1.83□□□□□ -2.7
SMC4-223ENST00000493695 CMYA5Q8N3K9 4069 aa-1.83□□□□□ -2.7
SMC4-223ENST00000493695 ARFGEF2Q9Y6D5 1785 aa-1.84□□□□□ -2.7
SMC4-223ENST00000493695 ACACBO00763 2458 aa-1.84□□□□□ -2.7
SMC4-223ENST00000493695 CCNB3Q8WWL7 1395 aa-1.85□□□□□ -2.7
SMC4-223ENST00000493695 CCDC88BA6NC98 1476 aa-1.85□□□□□ -2.71
SMC4-223ENST00000493695 CEBPZOSA8MTT3 80 aa-1.85□□□□□ -2.71
SMC4-223ENST00000493695 S4R3F8 94 aa-1.85□□□□□ -2.71
SMC4-223ENST00000493695 MAP3K4Q9Y6R4 1608 aa-1.86□□□□□ -2.71
SMC4-223ENST00000493695 DNHD1Q96M86 4753 aa-1.86□□□□□ -2.71
SMC4-223ENST00000493695 CCDC168Q8NDH2 2452 aa-1.86□□□□□ -2.71
SMC4-223ENST00000493695 FRYQ5TBA9 3013 aa-1.87□□□□□ -2.71
SMC4-223ENST00000493695 K7EP34 96 aa-1.87□□□□□ -2.71
SMC4-223ENST00000493695 SPENQ96T58 3664 aaKnown RBP-1.87□□□□□ -2.71
SMC4-223ENST00000493695 KIF14Q15058 1648 aa-1.88□□□□□ -2.71
SMC4-223ENST00000493695 PPLO60437 1756 aa-1.88□□□□□ -2.71
SMC4-223ENST00000493695 MT1HP80294 61 aa-1.89□□□□□ -2.71
SMC4-223ENST00000493695 PIK3C2BO00750 1634 aa-1.89□□□□□ -2.71
SMC4-223ENST00000493695 NIPBLQ6KC79 2804 aaeCLIP-1.89□□□□□ -2.71
SMC4-223ENST00000493695 DDX60LQ5H9U9 1706 aaKnown RBP-1.89□□□□□ -2.71
SMC4-223ENST00000493695 DEFB130BP0DP73 79 aa-1.9□□□□□ -2.71
SMC4-223ENST00000493695 DEFB130AP0DP74 79 aa-1.9□□□□□ -2.71
SMC4-223ENST00000493695 S100A16Q96FQ6 103 aaKnown RBP-1.9□□□□□ -2.71
SMC4-223ENST00000493695 DNAH7Q8WXX0 4024 aa-1.9□□□□□ -2.71
SMC4-223ENST00000493695 ACYP1P07311 99 aa-1.91□□□□□ -2.72
SMC4-223ENST00000493695 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.91□□□□□ -2.72
SMC4-223ENST00000493695 TTC37Q6PGP7 1564 aa-1.92□□□□□ -2.72
SMC4-223ENST00000493695 IFI6P09912 130 aa-1.93□□□□□ -2.72
SMC4-223ENST00000493695 PLCH1Q4KWH8 1693 aa-1.93□□□□□ -2.72
SMC4-223ENST00000493695 UMAD1C9J7I0 102 aa-1.94□□□□□ -2.72
SMC4-223ENST00000493695 IFI27P40305 119 aaPredicted RBP-1.94□□□□□ -2.72
SMC4-223ENST00000493695 KRTAP19-5Q3LI72 72 aa-1.94□□□□□ -2.72
SMC4-223ENST00000493695 PVALEFA0A1B0GWK0 134 aa-1.95□□□□□ -2.72
SMC4-223ENST00000493695 IAPPP10997 89 aa-1.95□□□□□ -2.72
SMC4-223ENST00000493695 DEFA5Q01523 94 aa-1.95□□□□□ -2.72
SMC4-223ENST00000493695 RNF213Q63HN8 5207 aa-1.96□□□□□ -2.72
SMC4-223ENST00000493695 C5orf42Q9H799 3197 aa-1.96□□□□□ -2.72
SMC4-223ENST00000493695 DEFB110Q30KQ9 67 aa-1.96□□□□□ -2.72
SMC4-223ENST00000493695 V9GYS6 101 aa-1.96□□□□□ -2.72
SMC4-223ENST00000493695 ITSN1Q15811 1721 aa-1.97□□□□□ -2.72
SMC4-223ENST00000493695 NDUFA4O00483 81 aa-1.97□□□□□ -2.72
SMC4-223ENST00000493695 THOC2Q8NI27 1593 aaKnown RBP-1.98□□□□□ -2.73
SMC4-223ENST00000493695 Q9H521 79 aa-1.98□□□□□ -2.73
SMC4-223ENST00000493695 SPTBN5Q9NRC6 3674 aaKnown RBP-1.98□□□□□ -2.73
SMC4-223ENST00000493695 DEFB106AQ8N104 65 aa-1.99□□□□□ -2.73
SMC4-223ENST00000493695 ZC3H13Q5T200 1668 aaKnown RBP-1.99□□□□□ -2.73
SMC4-223ENST00000493695 CFAP43Q8NDM7 1665 aa-1.99□□□□□ -2.73
SMC4-223ENST00000493695 DYNC2H1Q8NCM8 4307 aaKnown RBP-2□□□□□ -2.73
SMC4-223ENST00000493695 RYR2Q92736 4967 aa-2.01□□□□□ -2.73
SMC4-223ENST00000493695 TLN2Q9Y4G6 2542 aa-2.02□□□□□ -2.73
SMC4-223ENST00000493695 TDRG1Q3Y452 100 aa-2.02□□□□□ -2.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms