RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 C20orf166-AS1Q96NR2 134 aa8.94□□□□□ -0.98
NUP50-218ENST00000493456 TRAV13-2A0A0B4J235 113 aa8.93□□□□□ -0.98
NUP50-218ENST00000493456 Q6ZVH6 145 aa8.93□□□□□ -0.98
NUP50-218ENST00000493456 SMIM11BQ8TCY0 68 aa8.92□□□□□ -0.98
NUP50-218ENST00000493456 LST1O00453 97 aa8.91□□□□□ -0.98
NUP50-218ENST00000493456 MT1FP04733 61 aa8.91□□□□□ -0.98
NUP50-218ENST00000493456 SLC7A5P1Q8MH63 180 aa8.91□□□□□ -0.98
NUP50-218ENST00000493456 A8MUU9 505 aa8.9□□□□□ -0.98
NUP50-218ENST00000493456 PET117Q6UWS5 81 aa8.9□□□□□ -0.98
NUP50-218ENST00000493456 VAMP3Q15836 100 aa8.89□□□□□ -0.99
NUP50-218ENST00000493456 Q6ZQY7 126 aa8.89□□□□□ -0.99
NUP50-218ENST00000493456 KRTAP9-3Q9BYQ3 159 aa8.89□□□□□ -0.99
NUP50-218ENST00000493456 OCIAD2Q56VL3 154 aa8.88□□□□□ -0.99
NUP50-218ENST00000493456 LINC00575Q6W349 94 aa8.88□□□□□ -0.99
NUP50-218ENST00000493456 MUSTN1Q8IVN3 82 aa8.87□□□□□ -0.99
NUP50-218ENST00000493456 hADV29S1A0JD25 119 aa8.86□□□□□ -0.99
NUP50-218ENST00000493456 KRTAP10-10P60014 251 aa8.86□□□□□ -0.99
NUP50-218ENST00000493456 LINC00846Q9NV44 126 aa8.86□□□□□ -0.99
NUP50-218ENST00000493456 FAM236DA0A1B0GTK5 79 aa8.85□□□□□ -0.99
NUP50-218ENST00000493456 FAM236CP0DP71 79 aa8.85□□□□□ -0.99
NUP50-218ENST00000493456 SS18L2Q9UHA2 77 aa8.84□□□□□ -0.99
NUP50-218ENST00000493456 PPDPFLQ8WWR9 84 aa8.82□□□□□ -1
NUP50-218ENST00000493456 SCGB1D1O95968 90 aa8.81□□□□□ -1
NUP50-218ENST00000493456 COLCA2A8K830 154 aa8.8□□□□□ -1
NUP50-218ENST00000493456 C3orf79P0CE67 100 aa8.79□□□□□ -1
NUP50-218ENST00000493456 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.79□□□□□ -1
NUP50-218ENST00000493456 RBM12B-AS1Q9P1G2 102 aa8.79□□□□□ -1
NUP50-218ENST00000493456 ANKRD39Q53RE8 183 aa8.78□□□□□ -1
NUP50-218ENST00000493456 SNHG12Q9BXW3 62 aa8.77□□□□□ -1.01
NUP50-218ENST00000493456 H3BUT2 72 aa8.76□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BKO60814 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BJP06899 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BOP23527 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BBP33778 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BDP58876 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BCP62807 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST2H2BEQ16778 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 KRTAP19-6Q3LI70 58 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.75□□□□□ -1.01
NUP50-218ENST00000493456 MPLKIPQ8TAP9 179 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BHQ93079 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BNQ99877 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 HIST1H2BMQ99879 126 aa8.75□□□□□ -1.01
NUP50-218ENST00000493456 KRTDAPP60985 99 aa8.73□□□□□ -1.01
NUP50-218ENST00000493456 KRTAP16-1A8MUX0 517 aa8.72□□□□□ -1.01
NUP50-218ENST00000493456 DSCR10P59022 87 aa8.72□□□□□ -1.01
NUP50-218ENST00000493456 TEN1Q86WV5 123 aa8.72□□□□□ -1.01
NUP50-218ENST00000493456 HRES1P13985 223 aa8.71□□□□□ -1.02
NUP50-218ENST00000493456 BVES-AS1Q5T3Y7 98 aa8.7□□□□□ -1.02
NUP50-218ENST00000493456 A0A087WSZ3 146 aa8.68□□□□□ -1.02
NUP50-218ENST00000493456 ATOH7Q8N100 152 aa8.67□□□□□ -1.02
NUP50-218ENST00000493456 LINC00313P59037 77 aa8.65□□□□□ -1.02
NUP50-218ENST00000493456 KRTAP6-3Q3LI67 103 aa8.65□□□□□ -1.02
NUP50-218ENST00000493456 C12orf57Q99622 126 aa8.65□□□□□ -1.02
NUP50-218ENST00000493456 SIGMAR1Q99720 223 aa8.65□□□□□ -1.02
NUP50-218ENST00000493456 SNRPEP62304 92 aaKnown RBP8.63□□□□□ -1.03
NUP50-218ENST00000493456 MTURNQ8N3F0 131 aa8.63□□□□□ -1.03
NUP50-218ENST00000493456 NOTCH2NLQ7Z3S9 236 aa8.62□□□□□ -1.03
NUP50-218ENST00000493456 COA6Q5JTJ3 125 aaKnown RBP8.61□□□□□ -1.03
NUP50-218ENST00000493456 NDUFV3P56181 108 aaKnown RBP8.6□□□□□ -1.03
NUP50-218ENST00000493456 SNCGO76070 127 aa8.59□□□□□ -1.03
NUP50-218ENST00000493456 IGKV4-1P06312 121 aa8.55□□□□□ -1.04
NUP50-218ENST00000493456 H3BMG7 143 aa8.54□□□□□ -1.04
NUP50-218ENST00000493456 A8MWP4 228 aa8.53□□□□□ -1.04
NUP50-218ENST00000493456 GHRHP01286 108 aa8.52□□□□□ -1.05
NUP50-218ENST00000493456 A0A1W2PNM2 257 aa8.51□□□□□ -1.05
NUP50-218ENST00000493456 HSBP1L1C9JCN9 74 aa8.5□□□□□ -1.05
NUP50-218ENST00000493456 H0YGX0 51 aa8.5□□□□□ -1.05
NUP50-218ENST00000493456 NEBP20929 6669 aa8.49□□□□□ -1.05
NUP50-218ENST00000493456 HIST1H4GQ99525 98 aa8.48□□□□□ -1.05
NUP50-218ENST00000493456 TRBV7-4A0A0J9YYF1 115 aa8.47□□□□□ -1.05
NUP50-218ENST00000493456 FAM218AQ96MZ4 157 aa8.47□□□□□ -1.05
NUP50-218ENST00000493456 IGHV6-1A0A0B4J1U7 121 aa8.46□□□□□ -1.06
NUP50-218ENST00000493456 FABP2P12104 132 aa8.46□□□□□ -1.06
NUP50-218ENST00000493456 Q8N9P0 234 aaPredicted RBP8.45□□□□□ -1.06
NUP50-218ENST00000493456 A0A1B0GX51 115 aa8.44□□□□□ -1.06
NUP50-218ENST00000493456 SPINK7P58062 85 aa8.43□□□□□ -1.06
NUP50-218ENST00000493456 LINC00472Q9H8W2 130 aa8.43□□□□□ -1.06
NUP50-218ENST00000493456 MUC12Q9UKN1 5478 aa8.43□□□□□ -1.06
NUP50-218ENST00000493456 DEFB116Q30KQ4 102 aa8.42□□□□□ -1.06
NUP50-218ENST00000493456 ZCCHC13Q8WW36 166 aaKnown RBP8.42□□□□□ -1.06
NUP50-218ENST00000493456 RAB37Q96AX2 223 aa8.42□□□□□ -1.06
NUP50-218ENST00000493456 C8orf87E5RJ46 101 aa8.41□□□□□ -1.06
NUP50-218ENST00000493456 ANKRD29Q8N6D5 301 aa8.41□□□□□ -1.06
NUP50-218ENST00000493456 A0A0B4J2C4 111 aa8.38□□□□□ -1.07
NUP50-218ENST00000493456 A0A1B0GVX0 72 aa8.36□□□□□ -1.07
NUP50-218ENST00000493456 TRACP01848 142 aa8.35□□□□□ -1.07
NUP50-218ENST00000493456 WFDC13Q8IUB5 93 aa8.34□□□□□ -1.07
NUP50-218ENST00000493456 CCKP06307 115 aa8.33□□□□□ -1.08
NUP50-218ENST00000493456 COX8AP10176 69 aa8.33□□□□□ -1.08
NUP50-218ENST00000493456 H3BQ85 93 aa8.32□□□□□ -1.08
NUP50-218ENST00000493456 HIST1H2BLQ99880 126 aa8.32□□□□□ -1.08
NUP50-218ENST00000493456 A0A1B0GV72 72 aa8.31□□□□□ -1.08
NUP50-218ENST00000493456 S100A2P29034 98 aa8.31□□□□□ -1.08
NUP50-218ENST00000493456 DLEU1O43261 78 aa8.3□□□□□ -1.08
NUP50-218ENST00000493456 HIST3H2BBQ8N257 126 aa8.3□□□□□ -1.08
NUP50-218ENST00000493456 ORMDL1Q9P0S3 153 aa8.3□□□□□ -1.08
NUP50-218ENST00000493456 DNAL4O96015 105 aa8.29□□□□□ -1.08
NUP50-218ENST00000493456 TMEM256-PLSCR3K7ERE1 68 aa8.26□□□□□ -1.09
NUP50-218ENST00000493456 TRIAP1O43715 76 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms