RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ROMO1P60602 79 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 TMEM258P61165 79 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 LSM3P62310 102 aaKnown RBP2.07□□□□□ -2.08
HMGB1-207ENST00000468384 ATP11AUNQ6ZP68 121 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 Q6ZUT4 128 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 GTF2H5Q6ZYL4 71 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 KCNRGQ8N5I3 272 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 ACBD7Q8N6N7 88 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 HIGD2AQ9BW72 106 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 IGKV2-40A0A087WW87 121 aaPredicted RBP2.06□□□□□ -2.08
HMGB1-207ENST00000468384 hDV103S1A0JD37 113 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 IGKV2D-40P01614 121 aaPredicted RBP2.06□□□□□ -2.08
HMGB1-207ENST00000468384 TRACP01848 142 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 PMP2P02689 132 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 MIC13Q5XKP0 118 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 ARPINQ7Z6K5 226 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 ATOH7Q8N100 152 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 HYLS1Q96M11 299 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 SEC11CQ9BY50 192 aa2.06□□□□□ -2.08
HMGB1-207ENST00000468384 HMSDA8MTL9 139 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 M0R3E3 92 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 PPYP01298 95 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 ARL14EPLP0DKL9 152 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 CKS2P33552 79 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 FXYD4P59646 89 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 HSD52Q0P140 79 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 ZNF345Q14585 488 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 Q6AWC8 147 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 IGFL1Q6UW32 110 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 AQP10Q96PS8 301 aa2.05□□□□□ -2.08
HMGB1-207ENST00000468384 TRBV25-1A0A075B6N4 114 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 TMSB15BA0A087X1C1 80 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 TRBV10-1A0A0K0K1A3 114 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 A0A1W2PNM2 257 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 C17orf112F2Z3M2 114 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 HINT1P49773 126 aaPredicted RBP2.04□□□□□ -2.08
HMGB1-207ENST00000468384 PYDC2Q56P42 97 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 XAF1Q6GPH4 301 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 RAB37Q96AX2 223 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 NAA60Q9H7X0 242 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 C14orf132Q9NPU4 83 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 SAR1AQ9NR31 198 aa2.04□□□□□ -2.08
HMGB1-207ENST00000468384 LOC107984156A0A0G2JMH3 177 aa2.03□□□□□ -2.08
HMGB1-207ENST00000468384 S100A10P60903 97 aa2.03□□□□□ -2.08
HMGB1-207ENST00000468384 LINC01545Q5VT33 79 aa2.03□□□□□ -2.08
HMGB1-207ENST00000468384 MRPL54Q6P161 138 aaKnown RBP2.03□□□□□ -2.08
HMGB1-207ENST00000468384 ARL17AQ8IVW1 177 aa2.03□□□□□ -2.08
HMGB1-207ENST00000468384 SFT2D1Q8WV19 159 aa2.03□□□□□ -2.08
HMGB1-207ENST00000468384 SNHG12Q9BXW3 62 aa2.03□□□□□ -2.08
HMGB1-207ENST00000468384 C22orf24Q9Y442 160 aa2.03□□□□□ -2.08
HMGB1-207ENST00000468384 IGHV1-24A0A0C4DH33 117 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 A0A0G2JQZ4 141 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 G3V3Q6 166 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 H3BQ15 152 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 MPC2O95563 127 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 NMSQ5H8A3 153 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 SPANXN5Q5MJ07 72 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 COPS9Q8WXC6 57 aa2.02□□□□□ -2.09
HMGB1-207ENST00000468384 MUC21A0A140T8X8 626 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 C3orf85A0A1B0GTC6 90 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 EDF1O60869 148 aaKnown RBP2.01□□□□□ -2.09
HMGB1-207ENST00000468384 HYPMO75409 117 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 SPINK8P0C7L1 97 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 BAALC-AS2P0C853 105 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 GNG11P61952 73 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 IQCJQ1A5X6 159 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 C9orf153Q5TBE3 101 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 C12orf73Q69YU5 71 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 C5orf17Q8NAS9 161 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 SERP1Q9Y6X1 66 aa2.01□□□□□ -2.09
HMGB1-207ENST00000468384 IGLC2P0DOY2 106 aa2□□□□□ -2.09
HMGB1-207ENST00000468384 COL5A1-AS1Q5SY13 56 aa2□□□□□ -2.09
HMGB1-207ENST00000468384 Q9BRP9 147 aa2□□□□□ -2.09
HMGB1-207ENST00000468384 NDUFB11Q9NX14 153 aa2□□□□□ -2.09
HMGB1-207ENST00000468384 TRBV6-1A0A0K0K1D8 114 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 P0C880 135 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 IFITM1P13164 125 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 PRLHP81277 87 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 FAM74A4Q5TZK3 123 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 SVBPQ8N300 66 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 TMEM254Q8TBM7 123 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 OBSCN-AS1Q96MR7 158 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 SPRR4Q96PI1 79 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 CYSTM1Q9H1C7 97 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 MRPL35Q9NZE8 188 aaKnown RBP1.99□□□□□ -2.09
HMGB1-207ENST00000468384 PRO2289Q9P1D8 64 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 PRO0461Q9UI25 63 aa1.99□□□□□ -2.09
HMGB1-207ENST00000468384 A0A0G2JND7 137 aa1.98□□□□□ -2.09
HMGB1-207ENST00000468384 CASC2Q6XLA1 102 aa1.98□□□□□ -2.09
HMGB1-207ENST00000468384 SMIM7Q9BQ49 75 aa1.98□□□□□ -2.09
HMGB1-207ENST00000468384 A0A087WSZ3 146 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 CEBPZOSA8MTT3 80 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 ERC2-IT1O76042 136 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 IL5P05113 134 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 DSCR8Q96T75 97 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 SPANXDQ9BXN6 97 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 SPRR2GQ9BYE4 73 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 TMEM242Q9NWH2 141 aa1.97□□□□□ -2.09
HMGB1-207ENST00000468384 TRAV12-1A0A0B4J245 112 aa1.96□□□□□ -2.1
HMGB1-207ENST00000468384 TRAV21A0A0B4J279 112 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms