RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NBDYA0A0U1RRE5 68 aa5.6□□□□□ -1.51
SYNE1-217ENST00000466159 SERP1Q9Y6X1 66 aa5.6□□□□□ -1.51
SYNE1-217ENST00000466159 H7BZZ5 65 aa5.6□□□□□ -1.51
SYNE1-217ENST00000466159 KLKP1Q107X0 134 aa5.6□□□□□ -1.51
SYNE1-217ENST00000466159 C9orf163Q8N9P6 203 aa5.6□□□□□ -1.51
SYNE1-217ENST00000466159 STARD9Q9P2P6 4700 aa5.59□□□□□ -1.51
SYNE1-217ENST00000466159 F8WEM9 126 aa5.59□□□□□ -1.51
SYNE1-217ENST00000466159 IGFL1Q6UW32 110 aa5.59□□□□□ -1.51
SYNE1-217ENST00000466159 PANO1I0J062 215 aa5.58□□□□□ -1.52
SYNE1-217ENST00000466159 Q6ZRN7 208 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-217ENST00000466159 PRKDCP78527 4128 aaKnown RBP5.58□□□□□ -1.52
SYNE1-217ENST00000466159 NUPR2A6NF83 97 aa5.58□□□□□ -1.52
SYNE1-217ENST00000466159 DSCR10P59022 87 aa5.57□□□□□ -1.52
SYNE1-217ENST00000466159 OCR1Q9BZK8 76 aa5.57□□□□□ -1.52
SYNE1-217ENST00000466159 VPS13DQ5THJ4 4388 aa5.56□□□□□ -1.52
SYNE1-217ENST00000466159 UBE2AP49459 152 aa5.56□□□□□ -1.52
SYNE1-217ENST00000466159 K7EQZ3 153 aa5.55□□□□□ -1.52
SYNE1-217ENST00000466159 DEFB116Q30KQ4 102 aa5.55□□□□□ -1.52
SYNE1-217ENST00000466159 IGLV8-61A0A075B6I0 122 aa5.55□□□□□ -1.52
SYNE1-217ENST00000466159 LINC00336Q6ZUF6 198 aa5.55□□□□□ -1.52
SYNE1-217ENST00000466159 TMEM254Q8TBM7 123 aa5.55□□□□□ -1.52
SYNE1-217ENST00000466159 PRO0628Q9UI54 55 aa5.55□□□□□ -1.52
SYNE1-217ENST00000466159 A0A087WSZ3 146 aa5.54□□□□□ -1.52
SYNE1-217ENST00000466159 H0Y9J4 135 aa5.54□□□□□ -1.52
SYNE1-217ENST00000466159 FAM30AQ9NZY2 134 aa5.54□□□□□ -1.52
SYNE1-217ENST00000466159 FP248Q71RG6 208 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-217ENST00000466159 FBN3Q75N90 2809 aa5.53□□□□□ -1.52
SYNE1-217ENST00000466159 KMT2AQ03164 3969 aa5.53□□□□□ -1.52
SYNE1-217ENST00000466159 SMIM26A0A096LP01 95 aa5.53□□□□□ -1.52
SYNE1-217ENST00000466159 LINC00474Q9P2X8 69 aa5.53□□□□□ -1.52
SYNE1-217ENST00000466159 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-217ENST00000466159 SPRR1BP22528 89 aa5.51□□□□□ -1.53
SYNE1-217ENST00000466159 PKIGQ9Y2B9 76 aa5.51□□□□□ -1.53
SYNE1-217ENST00000466159 A0A0U1RQV1 116 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 NDUFC1O43677 76 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 DNAH2Q9P225 4427 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 A0A087WTM6 91 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 KRTAP13-1Q8IUC0 172 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 SPACA4Q8TDM5 124 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 HECTD4Q9Y4D8 3996 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 DNHD1Q96M86 4753 aa5.5□□□□□ -1.53
SYNE1-217ENST00000466159 RPL37AP61513 92 aaKnown RBP5.49□□□□□ -1.53
SYNE1-217ENST00000466159 HCG22E2RYF7 251 aa5.48□□□□□ -1.53
SYNE1-217ENST00000466159 MEGF8Q7Z7M0 2845 aa5.48□□□□□ -1.53
SYNE1-217ENST00000466159 ATP5EP56381 51 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-217ENST00000466159 FRAS1Q86XX4 4008 aa5.47□□□□□ -1.53
SYNE1-217ENST00000466159 WFDC13Q8IUB5 93 aa5.46□□□□□ -1.53
SYNE1-217ENST00000466159 DNAH17Q9UFH2 4485 aa5.46□□□□□ -1.54
SYNE1-217ENST00000466159 LCE6AA0A183 80 aa5.46□□□□□ -1.54
SYNE1-217ENST00000466159 RTL8CO15255 209 aa5.46□□□□□ -1.54
SYNE1-217ENST00000466159 Q6ZR54 194 aa5.45□□□□□ -1.54
SYNE1-217ENST00000466159 DNAH8Q96JB1 4490 aa5.45□□□□□ -1.54
SYNE1-217ENST00000466159 LINC00472Q9H8W2 130 aa5.44□□□□□ -1.54
SYNE1-217ENST00000466159 TGP01266 2768 aa5.44□□□□□ -1.54
SYNE1-217ENST00000466159 IGLV9-49A0A0B4J1Y8 123 aa5.44□□□□□ -1.54
SYNE1-217ENST00000466159 PSORS1C2Q9UIG4 136 aa5.43□□□□□ -1.54
SYNE1-217ENST00000466159 FAM229BQ4G0N7 80 aa5.43□□□□□ -1.54
SYNE1-217ENST00000466159 KRTAP29-1A8MX34 341 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-217ENST00000466159 PRR15Q8IV56 129 aa5.42□□□□□ -1.54
SYNE1-217ENST00000466159 A8MWP4 228 aa5.42□□□□□ -1.54
SYNE1-217ENST00000466159 ZCCHC13Q8WW36 166 aaKnown RBP5.42□□□□□ -1.54
SYNE1-217ENST00000466159 IGLV5-52A0A0A0MRZ9 124 aa5.41□□□□□ -1.54
SYNE1-217ENST00000466159 BRK1Q8WUW1 75 aa5.41□□□□□ -1.54
SYNE1-217ENST00000466159 ANAPC11Q9NYG5 84 aa5.41□□□□□ -1.54
SYNE1-217ENST00000466159 PLAC8Q9NZF1 115 aa5.41□□□□□ -1.54
SYNE1-217ENST00000466159 LINC00483Q53H64 154 aa5.4□□□□□ -1.54
SYNE1-217ENST00000466159 CASC2Q6XLA1 102 aa5.4□□□□□ -1.54
SYNE1-217ENST00000466159 C1orf134Q5TEV5 83 aa5.4□□□□□ -1.55
SYNE1-217ENST00000466159 WWC2-AS2Q96NR7 200 aa5.39□□□□□ -1.55
SYNE1-217ENST00000466159 DNAH6Q9C0G6 4158 aa5.38□□□□□ -1.55
SYNE1-217ENST00000466159 LY6G6CO95867 125 aa5.38□□□□□ -1.55
SYNE1-217ENST00000466159 MPLKIPQ8TAP9 179 aa5.38□□□□□ -1.55
SYNE1-217ENST00000466159 ZNF861PO60384 105 aa5.38□□□□□ -1.55
SYNE1-217ENST00000466159 MOBPQ13875 183 aa5.38□□□□□ -1.55
SYNE1-217ENST00000466159 Q96NJ1 140 aa5.38□□□□□ -1.55
SYNE1-217ENST00000466159 C1orf195Q5TG92 126 aa5.37□□□□□ -1.55
SYNE1-217ENST00000466159 ZNF706Q9Y5V0 76 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-217ENST00000466159 DNAH11Q96DT5 4516 aa5.36□□□□□ -1.55
SYNE1-217ENST00000466159 MMP24-AS1A0A0U1RRL7 71 aa5.36□□□□□ -1.55
SYNE1-217ENST00000466159 MP68P56378 58 aa5.36□□□□□ -1.55
SYNE1-217ENST00000466159 LINC00208Q96KT6 92 aa5.36□□□□□ -1.55
SYNE1-217ENST00000466159 DNAH5Q8TE73 4624 aa5.35□□□□□ -1.55
SYNE1-217ENST00000466159 NDUFB1O75438 58 aa5.35□□□□□ -1.55
SYNE1-217ENST00000466159 PRR4Q16378 134 aa5.35□□□□□ -1.55
SYNE1-217ENST00000466159 ALMS1Q8TCU4 4167 aa5.34□□□□□ -1.55
SYNE1-217ENST00000466159 H0Y9P7 68 aa5.34□□□□□ -1.55
SYNE1-217ENST00000466159 hDV103S1A0JD37 113 aa5.33□□□□□ -1.56
SYNE1-217ENST00000466159 TRAV22A0A0B4J277 110 aa5.33□□□□□ -1.56
SYNE1-217ENST00000466159 IGLV7-43P04211 117 aa5.33□□□□□ -1.56
SYNE1-217ENST00000466159 V9GYY9 64 aa5.33□□□□□ -1.56
SYNE1-217ENST00000466159 KRTAP10-2P60368 255 aa5.32□□□□□ -1.56
SYNE1-217ENST00000466159 C1orf64Q8NEQ6 169 aa5.32□□□□□ -1.56
SYNE1-217ENST00000466159 HYDINQ4G0P3 5121 aa5.31□□□□□ -1.56
SYNE1-217ENST00000466159 CIRBP-AS1Q8TBR5 109 aa5.31□□□□□ -1.56
SYNE1-217ENST00000466159 IGHV6-1A0A0B4J1U7 121 aa5.3□□□□□ -1.56
SYNE1-217ENST00000466159 C8orf17Q9NRJ1 99 aa5.3□□□□□ -1.56
SYNE1-217ENST00000466159 SEC61GP60059 68 aa5.29□□□□□ -1.56
SYNE1-217ENST00000466159 ASB16-AS1Q495Z4 193 aa5.29□□□□□ -1.56
SYNE1-217ENST00000466159 A0A1B0GVX0 72 aa5.29□□□□□ -1.56
SYNE1-217ENST00000466159 Q1T7F1 81 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms