RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 H7BZZ5 65 aa13.02□□□□□ -0.32
CCDC88B-203ENST00000359902 F8WEM9 126 aa13.02□□□□□ -0.33
CCDC88B-203ENST00000359902 KLKP1Q107X0 134 aa13.01□□□□□ -0.33
CCDC88B-203ENST00000359902 A0A0G2JQZ4 141 aa12.99□□□□□ -0.33
CCDC88B-203ENST00000359902 IGFL1Q6UW32 110 aa12.99□□□□□ -0.33
CCDC88B-203ENST00000359902 EPM2AB3EWF7 344 aa12.98□□□□□ -0.33
CCDC88B-203ENST00000359902 H0Y9J4 135 aa12.97□□□□□ -0.33
CCDC88B-203ENST00000359902 PKIGQ9Y2B9 76 aa12.97□□□□□ -0.33
CCDC88B-203ENST00000359902 IGLV8-61A0A075B6I0 122 aa12.97□□□□□ -0.33
CCDC88B-203ENST00000359902 PANO1I0J062 215 aa12.96□□□□□ -0.34
CCDC88B-203ENST00000359902 LINC00474Q9P2X8 69 aa12.95□□□□□ -0.34
CCDC88B-203ENST00000359902 SNURFQ9Y675 71 aa12.94□□□□□ -0.34
CCDC88B-203ENST00000359902 DSCR10P59022 87 aa12.93□□□□□ -0.34
CCDC88B-203ENST00000359902 UBE2AP49459 152 aa12.93□□□□□ -0.34
CCDC88B-203ENST00000359902 OCR1Q9BZK8 76 aa12.93□□□□□ -0.34
CCDC88B-203ENST00000359902 NDUFC1O43677 76 aa12.91□□□□□ -0.34
CCDC88B-203ENST00000359902 VPS13DQ5THJ4 4388 aa12.91□□□□□ -0.34
CCDC88B-203ENST00000359902 STARD9Q9P2P6 4700 aa12.91□□□□□ -0.34
CCDC88B-203ENST00000359902 SPRR1BP22528 89 aa12.9□□□□□ -0.34
CCDC88B-203ENST00000359902 PRKDCP78527 4128 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-203ENST00000359902 SRRM2Q9UQ35 2752 aaKnown RBP12.88□□□□□ -0.35
CCDC88B-203ENST00000359902 SMIM26A0A096LP01 95 aa12.87□□□□□ -0.35
CCDC88B-203ENST00000359902 K7EQZ3 153 aa12.87□□□□□ -0.35
CCDC88B-203ENST00000359902 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-203ENST00000359902 A0A087WTM6 91 aa12.85□□□□□ -0.35
CCDC88B-203ENST00000359902 TMEM254Q8TBM7 123 aa12.85□□□□□ -0.35
CCDC88B-203ENST00000359902 SPACA4Q8TDM5 124 aa12.85□□□□□ -0.35
CCDC88B-203ENST00000359902 A0A087WSZ3 146 aa12.85□□□□□ -0.35
CCDC88B-203ENST00000359902 ATP5EP56381 51 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-203ENST00000359902 KRTAP13-1Q8IUC0 172 aa12.84□□□□□ -0.35
CCDC88B-203ENST00000359902 PRO0628Q9UI54 55 aa12.84□□□□□ -0.35
CCDC88B-203ENST00000359902 DEFB116Q30KQ4 102 aa12.8□□□□□ -0.36
CCDC88B-203ENST00000359902 LINC00336Q6ZUF6 198 aa12.8□□□□□ -0.36
CCDC88B-203ENST00000359902 FAM30AQ9NZY2 134 aa12.79□□□□□ -0.36
CCDC88B-203ENST00000359902 Q6ZR54 194 aa12.78□□□□□ -0.36
CCDC88B-203ENST00000359902 FP248Q71RG6 208 aaPredicted RBP12.78□□□□□ -0.36
CCDC88B-203ENST00000359902 A0A0U1RQV1 116 aa12.78□□□□□ -0.36
CCDC88B-203ENST00000359902 MEGF8Q7Z7M0 2845 aa12.77□□□□□ -0.36
CCDC88B-203ENST00000359902 HCG22E2RYF7 251 aa12.74□□□□□ -0.37
CCDC88B-203ENST00000359902 RTL8CO15255 209 aa12.74□□□□□ -0.37
CCDC88B-203ENST00000359902 LCE6AA0A183 80 aa12.72□□□□□ -0.37
CCDC88B-203ENST00000359902 KMT2AQ03164 3969 aa12.71□□□□□ -0.38
CCDC88B-203ENST00000359902 HECTD4Q9Y4D8 3996 aa12.71□□□□□ -0.38
CCDC88B-203ENST00000359902 RPL37AP61513 92 aaKnown RBP12.7□□□□□ -0.38
CCDC88B-203ENST00000359902 DNAH2Q9P225 4427 aa12.69□□□□□ -0.38
CCDC88B-203ENST00000359902 LINC00472Q9H8W2 130 aa12.68□□□□□ -0.38
CCDC88B-203ENST00000359902 PLAC8Q9NZF1 115 aa12.66□□□□□ -0.38
CCDC88B-203ENST00000359902 PSORS1C2Q9UIG4 136 aa12.65□□□□□ -0.38
CCDC88B-203ENST00000359902 DNAH17Q9UFH2 4485 aa12.65□□□□□ -0.38
CCDC88B-203ENST00000359902 IGLV5-52A0A0A0MRZ9 124 aa12.64□□□□□ -0.39
CCDC88B-203ENST00000359902 LINC00483Q53H64 154 aa12.64□□□□□ -0.39
CCDC88B-203ENST00000359902 WFDC13Q8IUB5 93 aa12.64□□□□□ -0.39
CCDC88B-203ENST00000359902 DNHD1Q96M86 4753 aa12.64□□□□□ -0.39
CCDC88B-203ENST00000359902 C1orf134Q5TEV5 83 aa12.63□□□□□ -0.39
CCDC88B-203ENST00000359902 IGLV9-49A0A0B4J1Y8 123 aa12.62□□□□□ -0.39
CCDC88B-203ENST00000359902 PRR15Q8IV56 129 aa12.62□□□□□ -0.39
CCDC88B-203ENST00000359902 KRTAP29-1A8MX34 341 aaPredicted RBP12.61□□□□□ -0.39
CCDC88B-203ENST00000359902 A8MWP4 228 aa12.6□□□□□ -0.39
CCDC88B-203ENST00000359902 FBN3Q75N90 2809 aa12.59□□□□□ -0.39
CCDC88B-203ENST00000359902 ZCCHC13Q8WW36 166 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-203ENST00000359902 BRK1Q8WUW1 75 aa12.58□□□□□ -0.4
CCDC88B-203ENST00000359902 ZNF706Q9Y5V0 76 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-203ENST00000359902 ZNF861PO60384 105 aa12.56□□□□□ -0.4
CCDC88B-203ENST00000359902 LY6G6CO95867 125 aa12.56□□□□□ -0.4
CCDC88B-203ENST00000359902 TGP01266 2768 aa12.56□□□□□ -0.4
CCDC88B-203ENST00000359902 FAM229BQ4G0N7 80 aa12.55□□□□□ -0.4
CCDC88B-203ENST00000359902 MPLKIPQ8TAP9 179 aa12.55□□□□□ -0.4
CCDC88B-203ENST00000359902 WWC2-AS2Q96NR7 200 aa12.55□□□□□ -0.4
CCDC88B-203ENST00000359902 CASC2Q6XLA1 102 aa12.54□□□□□ -0.4
CCDC88B-203ENST00000359902 DNAH8Q96JB1 4490 aa12.54□□□□□ -0.4
CCDC88B-203ENST00000359902 Q96NJ1 140 aa12.51□□□□□ -0.41
CCDC88B-203ENST00000359902 ANAPC11Q9NYG5 84 aa12.51□□□□□ -0.41
CCDC88B-203ENST00000359902 MOBPQ13875 183 aa12.49□□□□□ -0.41
CCDC88B-203ENST00000359902 FRAS1Q86XX4 4008 aa12.49□□□□□ -0.41
CCDC88B-203ENST00000359902 MMP24-AS1A0A0U1RRL7 71 aa12.45□□□□□ -0.42
CCDC88B-203ENST00000359902 NDUFB1O75438 58 aa12.45□□□□□ -0.42
CCDC88B-203ENST00000359902 MP68P56378 58 aa12.44□□□□□ -0.42
CCDC88B-203ENST00000359902 IGLV7-43P04211 117 aa12.44□□□□□ -0.42
CCDC88B-203ENST00000359902 DNAH6Q9C0G6 4158 aa12.42□□□□□ -0.42
CCDC88B-203ENST00000359902 KRTAP10-2P60368 255 aa12.42□□□□□ -0.42
CCDC88B-203ENST00000359902 C1orf195Q5TG92 126 aa12.4□□□□□ -0.42
CCDC88B-203ENST00000359902 LINC00208Q96KT6 92 aa12.4□□□□□ -0.42
CCDC88B-203ENST00000359902 hDV103S1A0JD37 113 aa12.39□□□□□ -0.43
CCDC88B-203ENST00000359902 H0Y9P7 68 aa12.38□□□□□ -0.43
CCDC88B-203ENST00000359902 CIRBP-AS1Q8TBR5 109 aa12.37□□□□□ -0.43
CCDC88B-203ENST00000359902 TRAV22A0A0B4J277 110 aa12.37□□□□□ -0.43
CCDC88B-203ENST00000359902 ASB16-AS1Q495Z4 193 aa12.37□□□□□ -0.43
CCDC88B-203ENST00000359902 H3BPC8 53 aa12.34□□□□□ -0.43
CCDC88B-203ENST00000359902 DNAH5Q8TE73 4624 aa12.34□□□□□ -0.43
CCDC88B-203ENST00000359902 DNAH11Q96DT5 4516 aa12.34□□□□□ -0.43
CCDC88B-203ENST00000359902 C8orf17Q9NRJ1 99 aa12.33□□□□□ -0.44
CCDC88B-203ENST00000359902 C1orf64Q8NEQ6 169 aa12.33□□□□□ -0.44
CCDC88B-203ENST00000359902 A0A1B0GVX0 72 aa12.32□□□□□ -0.44
CCDC88B-203ENST00000359902 Q1T7F1 81 aa12.32□□□□□ -0.44
CCDC88B-203ENST00000359902 ALMS1Q8TCU4 4167 aa12.3□□□□□ -0.44
CCDC88B-203ENST00000359902 IGHV6-1A0A0B4J1U7 121 aa12.3□□□□□ -0.44
CCDC88B-203ENST00000359902 CYP4F30PQ9H0H9 118 aa12.3□□□□□ -0.44
CCDC88B-203ENST00000359902 V9GYY9 64 aa12.3□□□□□ -0.44
CCDC88B-203ENST00000359902 PRR4Q16378 134 aa12.29□□□□□ -0.44
CCDC88B-203ENST00000359902 CDK2AP2O75956 126 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms