RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 IGLV5-37A0A075B6J1 123 aa11.97□□□□□ -0.49
CLN3-263ENST00000637871 NKAPP1Q8N9T2 125 aa11.97□□□□□ -0.49
CLN3-263ENST00000637871 GAGE2AQ6NT46 116 aa11.95□□□□□ -0.5
CLN3-263ENST00000637871 M0R2N4 97 aa11.94□□□□□ -0.5
CLN3-263ENST00000637871 C9orf129Q5T035 196 aaKnown RBP11.94□□□□□ -0.5
CLN3-263ENST00000637871 LOC107984640A0A0U1RRK4 108 aa11.93□□□□□ -0.5
CLN3-263ENST00000637871 C14orf177Q52M58 125 aa11.93□□□□□ -0.5
CLN3-263ENST00000637871 KCNQ1DNQ9H478 68 aa11.93□□□□□ -0.5
CLN3-263ENST00000637871 C14orf132Q9NPU4 83 aa11.93□□□□□ -0.5
CLN3-263ENST00000637871 TRBV7-7A0A0K0K1E9 115 aa11.93□□□□□ -0.5
CLN3-263ENST00000637871 CCKP06307 115 aa11.93□□□□□ -0.5
CLN3-263ENST00000637871 PDE6GP18545 87 aa11.93□□□□□ -0.5
CLN3-263ENST00000637871 KRTAP1-5Q9BYS1 174 aa11.92□□□□□ -0.5
CLN3-263ENST00000637871 TTC32Q5I0X7 151 aa11.91□□□□□ -0.5
CLN3-263ENST00000637871 DNAH2Q9P225 4427 aa11.9□□□□□ -0.5
CLN3-263ENST00000637871 A0A1B0GV72 72 aa11.89□□□□□ -0.51
CLN3-263ENST00000637871 PKIGQ9Y2B9 76 aa11.89□□□□□ -0.51
CLN3-263ENST00000637871 RBM3P98179 157 aaKnown RBP11.89□□□□□ -0.51
CLN3-263ENST00000637871 Q6ZQY7 126 aa11.89□□□□□ -0.51
CLN3-263ENST00000637871 LINC00528Q8N1L1 170 aa11.89□□□□□ -0.51
CLN3-263ENST00000637871 CNBPP62633 177 aaKnown RBP11.88□□□□□ -0.51
CLN3-263ENST00000637871 NBDYA0A0U1RRE5 68 aa11.87□□□□□ -0.51
CLN3-263ENST00000637871 PRYO14603 147 aa11.87□□□□□ -0.51
CLN3-263ENST00000637871 DNAH10Q8IVF4 4471 aa11.87□□□□□ -0.51
CLN3-263ENST00000637871 LOC110117498A0A087WWA1 95 aa11.86□□□□□ -0.51
CLN3-263ENST00000637871 PSCAO43653 123 aa11.86□□□□□ -0.51
CLN3-263ENST00000637871 C7orf33Q8WU49 177 aa11.86□□□□□ -0.51
CLN3-263ENST00000637871 LAMTOR3Q9UHA4 124 aa11.86□□□□□ -0.51
CLN3-263ENST00000637871 FRAS1Q86XX4 4008 aa11.85□□□□□ -0.51
CLN3-263ENST00000637871 SERTAD4-AS1Q5TG53 156 aa11.84□□□□□ -0.51
CLN3-263ENST00000637871 Q6ZR54 194 aa11.84□□□□□ -0.51
CLN3-263ENST00000637871 DHRS4-AS1Q9P1J3 65 aa11.83□□□□□ -0.52
CLN3-263ENST00000637871 IGLV1-50A0A075B6I6 118 aa11.82□□□□□ -0.52
CLN3-263ENST00000637871 SMCR5Q8TEV8 140 aa11.82□□□□□ -0.52
CLN3-263ENST00000637871 DSCR8Q96T75 97 aa11.82□□□□□ -0.52
CLN3-263ENST00000637871 Q6JHZ5 121 aa11.82□□□□□ -0.52
CLN3-263ENST00000637871 SPRR1AP35321 89 aa11.81□□□□□ -0.52
CLN3-263ENST00000637871 C16orf90A8MZG2 172 aa11.8□□□□□ -0.52
CLN3-263ENST00000637871 ATP5EP2Q5VTU8 51 aa11.79□□□□□ -0.52
CLN3-263ENST00000637871 Q6ZQT0 140 aa11.79□□□□□ -0.52
CLN3-263ENST00000637871 MRPL55Q7Z7F7 128 aaKnown RBP11.79□□□□□ -0.52
CLN3-263ENST00000637871 LINC00846Q9NV44 126 aa11.79□□□□□ -0.52
CLN3-263ENST00000637871 NDUFV3P56181 108 aaKnown RBP11.78□□□□□ -0.52
CLN3-263ENST00000637871 ANAPC13Q9BS18 74 aa11.78□□□□□ -0.52
CLN3-263ENST00000637871 ETDCA0A1B0GVM5 59 aa11.76□□□□□ -0.53
CLN3-263ENST00000637871 KRTAP4-16G5E9R7 235 aaPredicted RBP11.75□□□□□ -0.53
CLN3-263ENST00000637871 Q6ZRX8 168 aa11.75□□□□□ -0.53
CLN3-263ENST00000637871 UBL5Q9BZL1 73 aa11.75□□□□□ -0.53
CLN3-263ENST00000637871 DNAH17Q9UFH2 4485 aa11.75□□□□□ -0.53
CLN3-263ENST00000637871 FAT2Q9NYQ8 4349 aa11.74□□□□□ -0.53
CLN3-263ENST00000637871 TRBV7-4A0A0J9YYF1 115 aa11.74□□□□□ -0.53
CLN3-263ENST00000637871 B5MCH6 92 aa11.74□□□□□ -0.53
CLN3-263ENST00000637871 C1orf134Q5TEV5 83 aa11.74□□□□□ -0.53
CLN3-263ENST00000637871 RTL8CO15255 209 aa11.73□□□□□ -0.53
CLN3-263ENST00000637871 FAM168BA1KXE4 195 aa11.71□□□□□ -0.53
CLN3-263ENST00000637871 KRTAP7-1Q8IUC3 87 aa11.71□□□□□ -0.53
CLN3-263ENST00000637871 Q6ZRN7 208 aaPredicted RBP11.71□□□□□ -0.54
CLN3-263ENST00000637871 FAM19A5Q7Z5A7 132 aaPredicted RBP11.71□□□□□ -0.54
CLN3-263ENST00000637871 LINC00474Q9P2X8 69 aa11.71□□□□□ -0.54
CLN3-263ENST00000637871 RPL37AP8A6NKH3 93 aa11.69□□□□□ -0.54
CLN3-263ENST00000637871 REG3GQ6UW15 175 aa11.69□□□□□ -0.54
CLN3-263ENST00000637871 C9orf163Q8N9P6 203 aa11.69□□□□□ -0.54
CLN3-263ENST00000637871 A0A1B0GW54 56 aa11.68□□□□□ -0.54
CLN3-263ENST00000637871 LRCOL1A6NCL2 159 aa11.68□□□□□ -0.54
CLN3-263ENST00000637871 A0A096LNI7 61 aa11.68□□□□□ -0.54
CLN3-263ENST00000637871 TNP2Q05952 138 aa11.66□□□□□ -0.54
CLN3-263ENST00000637871 IGLV5-48A0A075B6I7 105 aa11.65□□□□□ -0.54
CLN3-263ENST00000637871 FAM236AA0A1B0GUQ0 79 aa11.64□□□□□ -0.55
CLN3-263ENST00000637871 FAM236BA0A1B0GV22 79 aa11.64□□□□□ -0.55
CLN3-263ENST00000637871 Q8N377 158 aa11.64□□□□□ -0.55
CLN3-263ENST00000637871 Q9BRP9 147 aa11.64□□□□□ -0.55
CLN3-263ENST00000637871 DNAH11Q96DT5 4516 aa11.64□□□□□ -0.55
CLN3-263ENST00000637871 PKD1P98161 4303 aa11.63□□□□□ -0.55
CLN3-263ENST00000637871 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.61□□□□□ -0.55
CLN3-263ENST00000637871 IGKV3D-7A0A0C4DH55 119 aa11.61□□□□□ -0.55
CLN3-263ENST00000637871 IGKV2-24A0A0C4DH68 120 aa11.61□□□□□ -0.55
CLN3-263ENST00000637871 LINC01547P58512 204 aaPredicted RBP11.61□□□□□ -0.55
CLN3-263ENST00000637871 HIST1H4AP62805 103 aaKnown RBP11.61□□□□□ -0.55
CLN3-263ENST00000637871 HECTD4Q9Y4D8 3996 aa11.61□□□□□ -0.55
CLN3-263ENST00000637871 ATOX1O00244 68 aa11.6□□□□□ -0.55
CLN3-263ENST00000637871 UBE2BP63146 152 aa11.6□□□□□ -0.55
CLN3-263ENST00000637871 A0A1W2PNN7 141 aa11.6□□□□□ -0.55
CLN3-263ENST00000637871 H0Y9J4 135 aa11.59□□□□□ -0.55
CLN3-263ENST00000637871 CXCL6P80162 114 aa11.59□□□□□ -0.55
CLN3-263ENST00000637871 FUSP35637 526 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLN3-263ENST00000637871 Q6ZVQ6 151 aa11.58□□□□□ -0.56
CLN3-263ENST00000637871 DEFB105AQ8NG35 78 aa11.57□□□□□ -0.56
CLN3-263ENST00000637871 A0A087WTM6 91 aa11.56□□□□□ -0.56
CLN3-263ENST00000637871 LINC00336Q6ZUF6 198 aa11.56□□□□□ -0.56
CLN3-263ENST00000637871 EPPK1P58107 5090 aaKnown RBP11.55□□□□□ -0.56
CLN3-263ENST00000637871 PKHD1P08F94 4074 aa11.54□□□□□ -0.56
CLN3-263ENST00000637871 FAM19A1Q7Z5A9 133 aa11.54□□□□□ -0.56
CLN3-263ENST00000637871 BCE1O60756 84 aa11.53□□□□□ -0.56
CLN3-263ENST00000637871 A0A1B0GVY2 172 aa11.52□□□□□ -0.57
CLN3-263ENST00000637871 EPM2AB3EWF7 344 aa11.52□□□□□ -0.57
CLN3-263ENST00000637871 DNAH5Q8TE73 4624 aa11.51□□□□□ -0.57
CLN3-263ENST00000637871 KRTAP10-2P60368 255 aa11.51□□□□□ -0.57
CLN3-263ENST00000637871 HAMPP81172 84 aa11.51□□□□□ -0.57
CLN3-263ENST00000637871 F8WEM9 126 aa11.5□□□□□ -0.57
CLN3-263ENST00000637871 UQCRQO14949 82 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms