RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PMCHL2Q9BQD1 86 aa9.06□□□□□ -0.96
CLN3-246ENST00000636228 IGKCP01834 107 aa9.05□□□□□ -0.96
CLN3-246ENST00000636228 TSPEAR-AS2P59090 65 aa9.05□□□□□ -0.96
CLN3-246ENST00000636228 MYMXA0A1B0GTQ4 84 aa9.04□□□□□ -0.96
CLN3-246ENST00000636228 Q9BRP9 147 aa9.03□□□□□ -0.96
CLN3-246ENST00000636228 C20orf202A1L168 122 aa9.02□□□□□ -0.97
CLN3-246ENST00000636228 LINC00587B1AMM8 73 aa9.02□□□□□ -0.97
CLN3-246ENST00000636228 DDTP30046 118 aa9.02□□□□□ -0.97
CLN3-246ENST00000636228 Q8N377 158 aa9.02□□□□□ -0.97
CLN3-246ENST00000636228 S100A12P80511 92 aa9.01□□□□□ -0.97
CLN3-246ENST00000636228 LINC01547P58512 204 aaPredicted RBP9□□□□□ -0.97
CLN3-246ENST00000636228 SSBP3-AS1Q7Z2R9 100 aa9□□□□□ -0.97
CLN3-246ENST00000636228 AKR1D1P51857 326 aa8.99□□□□□ -0.97
CLN3-246ENST00000636228 SEC61BP60468 96 aaKnown RBP8.99□□□□□ -0.97
CLN3-246ENST00000636228 LOC107984156A0A0G2JMH3 177 aa8.98□□□□□ -0.97
CLN3-246ENST00000636228 LEPROTO15243 131 aa8.98□□□□□ -0.97
CLN3-246ENST00000636228 Q6ZRX8 168 aa8.98□□□□□ -0.97
CLN3-246ENST00000636228 ARL17AQ8IVW1 177 aa8.98□□□□□ -0.97
CLN3-246ENST00000636228 TRBV10-2A0A0K0K1G8 114 aa8.97□□□□□ -0.97
CLN3-246ENST00000636228 HERVK_113P61574 105 aa8.97□□□□□ -0.97
CLN3-246ENST00000636228 J3QQQ9 107 aa8.96□□□□□ -0.98
CLN3-246ENST00000636228 SLC25A20O43772 301 aa8.96□□□□□ -0.98
CLN3-246ENST00000636228 S100A7L2Q5SY68 101 aa8.96□□□□□ -0.98
CLN3-246ENST00000636228 ATOH7Q8N100 152 aa8.96□□□□□ -0.98
CLN3-246ENST00000636228 E9PLD3 99 aa8.95□□□□□ -0.98
CLN3-246ENST00000636228 NPC2P61916 151 aa8.95□□□□□ -0.98
CLN3-246ENST00000636228 RPS29P62273 56 aaKnown RBP8.95□□□□□ -0.98
CLN3-246ENST00000636228 C9orf153Q5TBE3 101 aa8.95□□□□□ -0.98
CLN3-246ENST00000636228 ST20-AS1Q8NBB2 130 aa8.95□□□□□ -0.98
CLN3-246ENST00000636228 SPANXB1Q9NS25 103 aaPredicted RBP8.95□□□□□ -0.98
CLN3-246ENST00000636228 EIF4EBP3O60516 100 aaPredicted RBP8.94□□□□□ -0.98
CLN3-246ENST00000636228 SCGB1D1O95968 90 aa8.94□□□□□ -0.98
CLN3-246ENST00000636228 IGLV6-57P01721 117 aa8.94□□□□□ -0.98
CLN3-246ENST00000636228 JOSD1Q15040 202 aaPredicted RBP8.94□□□□□ -0.98
CLN3-246ENST00000636228 MIEN1Q9BRT3 115 aa8.94□□□□□ -0.98
CLN3-246ENST00000636228 TRAV23DV6A0A075B6W5 121 aa8.93□□□□□ -0.98
CLN3-246ENST00000636228 XP32Q5T750 250 aa8.93□□□□□ -0.98
CLN3-246ENST00000636228 SOSTDC1Q6X4U4 206 aa8.93□□□□□ -0.98
CLN3-246ENST00000636228 LGALS3P17931 250 aaKnown RBP8.92□□□□□ -0.98
CLN3-246ENST00000636228 ANKRD39Q53RE8 183 aa8.92□□□□□ -0.98
CLN3-246ENST00000636228 NDUFC2O95298 119 aa8.91□□□□□ -0.98
CLN3-246ENST00000636228 ADAMTSL4-AS1Q5T5F5 129 aa8.91□□□□□ -0.98
CLN3-246ENST00000636228 ZNF73O43830 326 aaPredicted RBP8.9□□□□□ -0.98
CLN3-246ENST00000636228 PYY3Q5JQD4 70 aa8.9□□□□□ -0.98
CLN3-246ENST00000636228 NMUP48645 174 aa8.89□□□□□ -0.99
CLN3-246ENST00000636228 HRCT1Q6UXD1 115 aa8.89□□□□□ -0.99
CLN3-246ENST00000636228 LCE2DQ5TA82 110 aaPredicted RBP8.88□□□□□ -0.99
CLN3-246ENST00000636228 A0A0J9YXY3 114 aa8.87□□□□□ -0.99
CLN3-246ENST00000636228 HSBP1L1C9JCN9 74 aa8.87□□□□□ -0.99
CLN3-246ENST00000636228 LCE2CQ5TA81 110 aa8.87□□□□□ -0.99
CLN3-246ENST00000636228 TTTY13Q9BZ97 58 aa8.86□□□□□ -0.99
CLN3-246ENST00000636228 LOC105371267A0A1B0GV96 52 aa8.85□□□□□ -0.99
CLN3-246ENST00000636228 PCP2Q8IVA1 136 aa8.84□□□□□ -0.99
CLN3-246ENST00000636228 C9orf92A6NGG3 77 aa8.83□□□□□ -1
CLN3-246ENST00000636228 ZNF815PA8K554 130 aa8.83□□□□□ -1
CLN3-246ENST00000636228 OR13C6PQ8NH95 151 aa8.83□□□□□ -1
CLN3-246ENST00000636228 VAMP8Q9BV40 100 aa8.83□□□□□ -1
CLN3-246ENST00000636228 FSIP2Q5CZC0 6907 aa8.83□□□□□ -1
CLN3-246ENST00000636228 HINT1P49773 126 aaPredicted RBP8.82□□□□□ -1
CLN3-246ENST00000636228 KRTAP19-2Q3LHN2 52 aa8.82□□□□□ -1
CLN3-246ENST00000636228 PCOTHQ58A44 107 aa8.82□□□□□ -1
CLN3-246ENST00000636228 PAM16Q9Y3D7 125 aa8.81□□□□□ -1
CLN3-246ENST00000636228 SPRR1BP22528 89 aa8.8□□□□□ -1
CLN3-246ENST00000636228 SPATA45Q537H7 98 aa8.8□□□□□ -1
CLN3-246ENST00000636228 LINC00308Q8TCZ7 52 aa8.8□□□□□ -1
CLN3-246ENST00000636228 LITAFQ99732 161 aa8.8□□□□□ -1
CLN3-246ENST00000636228 IGLV8-61A0A075B6I0 122 aa8.79□□□□□ -1
CLN3-246ENST00000636228 CRCT1Q9UGL9 99 aa8.79□□□□□ -1
CLN3-246ENST00000636228 TIMM17BO60830 172 aa8.78□□□□□ -1
CLN3-246ENST00000636228 COX8AP10176 69 aa8.78□□□□□ -1
CLN3-246ENST00000636228 SPANXCQ9NY87 97 aa8.78□□□□□ -1
CLN3-246ENST00000636228 SMIM6P0DI80 62 aa8.77□□□□□ -1.01
CLN3-246ENST00000636228 MT1HP80294 61 aa8.77□□□□□ -1.01
CLN3-246ENST00000636228 DEFB105AQ8NG35 78 aa8.77□□□□□ -1.01
CLN3-246ENST00000636228 LIMD2Q9BT23 127 aa8.77□□□□□ -1.01
CLN3-246ENST00000636228 DHRS4-AS1Q9P1J3 65 aa8.77□□□□□ -1.01
CLN3-246ENST00000636228 LAMTOR3Q9UHA4 124 aa8.77□□□□□ -1.01
CLN3-246ENST00000636228 DLEU1O43261 78 aa8.76□□□□□ -1.01
CLN3-246ENST00000636228 SLC25A34Q6PIV7 304 aa8.76□□□□□ -1.01
CLN3-246ENST00000636228 SCGB1D4Q6XE38 83 aa8.76□□□□□ -1.01
CLN3-246ENST00000636228 CBY1Q9Y3M2 126 aa8.76□□□□□ -1.01
CLN3-246ENST00000636228 H7C2G1 150 aa8.75□□□□□ -1.01
CLN3-246ENST00000636228 Q1RN00 199 aa8.75□□□□□ -1.01
CLN3-246ENST00000636228 C14orf144Q96I85 54 aa8.75□□□□□ -1.01
CLN3-246ENST00000636228 COX7BP24311 80 aa8.74□□□□□ -1.01
CLN3-246ENST00000636228 TAL2Q16559 108 aa8.74□□□□□ -1.01
CLN3-246ENST00000636228 C6orf99Q4VX62 202 aa8.74□□□□□ -1.01
CLN3-246ENST00000636228 SPANXDQ9BXN6 97 aa8.73□□□□□ -1.01
CLN3-246ENST00000636228 A0A0G2JQZ4 141 aa8.72□□□□□ -1.01
CLN3-246ENST00000636228 ELOF1P60002 83 aaKnown RBP8.72□□□□□ -1.01
CLN3-246ENST00000636228 Q6ZVH6 145 aa8.7□□□□□ -1.02
CLN3-246ENST00000636228 PRO1933Q9H354 126 aa8.7□□□□□ -1.02
CLN3-246ENST00000636228 C2orf91Q6ZV80 131 aa8.69□□□□□ -1.02
CLN3-246ENST00000636228 TEX49A0A1B0GTD5 131 aa8.68□□□□□ -1.02
CLN3-246ENST00000636228 SMIM29Q86T20 159 aa8.68□□□□□ -1.02
CLN3-246ENST00000636228 HIGD1BQ9P298 99 aa8.68□□□□□ -1.02
CLN3-246ENST00000636228 IFITM1P13164 125 aa8.67□□□□□ -1.02
CLN3-246ENST00000636228 CD164Q04900 197 aa8.67□□□□□ -1.02
CLN3-246ENST00000636228 LINC00518Q8N0U6 118 aa8.67□□□□□ -1.02
CLN3-246ENST00000636228 C1orf195Q5TG92 126 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms