RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 C9orf153Q5TBE3 101 aa9.23□□□□□ -0.93
CLN3-242ENST00000635958 DNAH17Q9UFH2 4485 aa9.23□□□□□ -0.93
CLN3-242ENST00000635958 HYDINQ4G0P3 5121 aa9.22□□□□□ -0.93
CLN3-242ENST00000635958 SLPIP03973 132 aa9.22□□□□□ -0.93
CLN3-242ENST00000635958 CAMK2N2Q96S95 79 aa9.22□□□□□ -0.93
CLN3-242ENST00000635958 SYCNQ0VAF6 134 aa9.21□□□□□ -0.94
CLN3-242ENST00000635958 Q6ZRU5 148 aa9.21□□□□□ -0.94
CLN3-242ENST00000635958 A0A087WTM6 91 aa9.2□□□□□ -0.94
CLN3-242ENST00000635958 CRYGAP11844 174 aa9.2□□□□□ -0.94
CLN3-242ENST00000635958 RPL18AQ02543 176 aaKnown RBP9.2□□□□□ -0.94
CLN3-242ENST00000635958 Q8N814 137 aa9.2□□□□□ -0.94
CLN3-242ENST00000635958 C14orf132Q9NPU4 83 aa9.2□□□□□ -0.94
CLN3-242ENST00000635958 C6orf48Q9UBA6 75 aa9.2□□□□□ -0.94
CLN3-242ENST00000635958 RTL8CO15255 209 aa9.19□□□□□ -0.94
CLN3-242ENST00000635958 CNBPP62633 177 aaKnown RBP9.19□□□□□ -0.94
CLN3-242ENST00000635958 TRBV10-3A0A0K0K1G6 114 aa9.18□□□□□ -0.94
CLN3-242ENST00000635958 GHRHP01286 108 aa9.17□□□□□ -0.94
CLN3-242ENST00000635958 C9orf116Q5BN46 136 aaPredicted RBP9.17□□□□□ -0.94
CLN3-242ENST00000635958 LINC00846Q9NV44 126 aa9.17□□□□□ -0.94
CLN3-242ENST00000635958 SMIM20Q8N5G0 67 aa9.15□□□□□ -0.94
CLN3-242ENST00000635958 NCR3O14931 201 aa9.15□□□□□ -0.95
CLN3-242ENST00000635958 BCE1O60756 84 aa9.15□□□□□ -0.95
CLN3-242ENST00000635958 TLX1NBP0CAT3 122 aa9.15□□□□□ -0.95
CLN3-242ENST00000635958 PDE6GP18545 87 aa9.15□□□□□ -0.95
CLN3-242ENST00000635958 TNP2Q05952 138 aa9.15□□□□□ -0.95
CLN3-242ENST00000635958 SERP2Q8N6R1 65 aa9.15□□□□□ -0.95
CLN3-242ENST00000635958 FRAS1Q86XX4 4008 aa9.14□□□□□ -0.95
CLN3-242ENST00000635958 EPPK1P58107 5090 aaKnown RBP9.14□□□□□ -0.95
CLN3-242ENST00000635958 RPS28P62857 69 aaKnown RBP9.14□□□□□ -0.95
CLN3-242ENST00000635958 NDUFC2-KCTD14E9PQ53 114 aa9.13□□□□□ -0.95
CLN3-242ENST00000635958 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.12□□□□□ -0.95
CLN3-242ENST00000635958 hADV29S1A0JD25 119 aa9.12□□□□□ -0.95
CLN3-242ENST00000635958 C9orf163Q8N9P6 203 aa9.12□□□□□ -0.95
CLN3-242ENST00000635958 FAT2Q9NYQ8 4349 aa9.12□□□□□ -0.95
CLN3-242ENST00000635958 C9orf129Q5T035 196 aaKnown RBP9.12□□□□□ -0.95
CLN3-242ENST00000635958 LINC00575Q6W349 94 aa9.12□□□□□ -0.95
CLN3-242ENST00000635958 UBL5Q9BZL1 73 aa9.12□□□□□ -0.95
CLN3-242ENST00000635958 LOC110117498A0A087WWA1 95 aa9.1□□□□□ -0.95
CLN3-242ENST00000635958 IGKV3D-7A0A0C4DH55 119 aa9.1□□□□□ -0.95
CLN3-242ENST00000635958 BIRC6Q9NR09 4857 aa9.1□□□□□ -0.95
CLN3-242ENST00000635958 Q6ZRP5 223 aa9.1□□□□□ -0.95
CLN3-242ENST00000635958 DNAH11Q96DT5 4516 aa9.09□□□□□ -0.95
CLN3-242ENST00000635958 LOC107984640A0A0U1RRK4 108 aa9.09□□□□□ -0.95
CLN3-242ENST00000635958 TMEM258P61165 79 aa9.09□□□□□ -0.95
CLN3-242ENST00000635958 LINC00336Q6ZUF6 198 aa9.09□□□□□ -0.95
CLN3-242ENST00000635958 RBM3P98179 157 aaKnown RBP9.08□□□□□ -0.96
CLN3-242ENST00000635958 C6orf99Q4VX62 202 aa9.08□□□□□ -0.96
CLN3-242ENST00000635958 TRBV7-6A0A0J9YX20 115 aa9.08□□□□□ -0.96
CLN3-242ENST00000635958 J3KT08 172 aa9.08□□□□□ -0.96
CLN3-242ENST00000635958 IGLV6-57P01721 117 aa9.07□□□□□ -0.96
CLN3-242ENST00000635958 KRTAP17-1Q9BYP8 105 aa9.07□□□□□ -0.96
CLN3-242ENST00000635958 PKIGQ9Y2B9 76 aa9.07□□□□□ -0.96
CLN3-242ENST00000635958 HECTD4Q9Y4D8 3996 aa9.05□□□□□ -0.96
CLN3-242ENST00000635958 C16orf90A8MZG2 172 aa9.05□□□□□ -0.96
CLN3-242ENST00000635958 XAGE1AQ9HD64 81 aa9.05□□□□□ -0.96
CLN3-242ENST00000635958 PRR3P79522 188 aaKnown RBP9.04□□□□□ -0.96
CLN3-242ENST00000635958 Q6ZQT0 140 aa9.04□□□□□ -0.96
CLN3-242ENST00000635958 PKD1P98161 4303 aa9.04□□□□□ -0.96
CLN3-242ENST00000635958 IGLV5-52A0A0A0MRZ9 124 aa9.03□□□□□ -0.96
CLN3-242ENST00000635958 KRTAP10-2P60368 255 aa9.03□□□□□ -0.96
CLN3-242ENST00000635958 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.03□□□□□ -0.96
CLN3-242ENST00000635958 DSCR8Q96T75 97 aa9.03□□□□□ -0.96
CLN3-242ENST00000635958 PLA2G2DQ9UNK4 145 aa9.03□□□□□ -0.96
CLN3-242ENST00000635958 A0A096LNI7 61 aa9.02□□□□□ -0.97
CLN3-242ENST00000635958 Q8NDZ9 215 aa9.01□□□□□ -0.97
CLN3-242ENST00000635958 DIRC1Q969H9 104 aa9.01□□□□□ -0.97
CLN3-242ENST00000635958 LAMTOR3Q9UHA4 124 aa9.01□□□□□ -0.97
CLN3-242ENST00000635958 FUSP35637 526 aaKnown RBP eCLIP9.01□□□□□ -0.97
CLN3-242ENST00000635958 VPREB1P12018 145 aa9□□□□□ -0.97
CLN3-242ENST00000635958 CXCL6P80162 114 aa9□□□□□ -0.97
CLN3-242ENST00000635958 LINC00474Q9P2X8 69 aa9□□□□□ -0.97
CLN3-242ENST00000635958 DNAH5Q8TE73 4624 aa8.99□□□□□ -0.97
CLN3-242ENST00000635958 TRAV23DV6A0A075B6W5 121 aa8.99□□□□□ -0.97
CLN3-242ENST00000635958 A0A087WVE0 104 aa8.98□□□□□ -0.97
CLN3-242ENST00000635958 A0A1B0GVY2 172 aa8.98□□□□□ -0.97
CLN3-242ENST00000635958 IGLV5-37A0A075B6J1 123 aa8.98□□□□□ -0.97
CLN3-242ENST00000635958 COX7BP24311 80 aa8.98□□□□□ -0.97
CLN3-242ENST00000635958 IGKV2-24A0A0C4DH68 120 aa8.97□□□□□ -0.97
CLN3-242ENST00000635958 KRTAP7-1Q8IUC3 87 aa8.97□□□□□ -0.97
CLN3-242ENST00000635958 TRAV7A0A075B6U4 112 aa8.96□□□□□ -0.97
CLN3-242ENST00000635958 CHTF8P0CG12 524 aa8.96□□□□□ -0.97
CLN3-242ENST00000635958 SERTAD4-AS1Q5TG53 156 aa8.96□□□□□ -0.97
CLN3-242ENST00000635958 PANO1I0J062 215 aa8.96□□□□□ -0.98
CLN3-242ENST00000635958 M0R378 163 aa8.96□□□□□ -0.98
CLN3-242ENST00000635958 SPACA4Q8TDM5 124 aa8.96□□□□□ -0.98
CLN3-242ENST00000635958 A0A1W2PNN7 141 aa8.95□□□□□ -0.98
CLN3-242ENST00000635958 FAM168BA1KXE4 195 aa8.95□□□□□ -0.98
CLN3-242ENST00000635958 EPM2AB3EWF7 344 aa8.95□□□□□ -0.98
CLN3-242ENST00000635958 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.95□□□□□ -0.98
CLN3-242ENST00000635958 ZNF73O43830 326 aaPredicted RBP8.94□□□□□ -0.98
CLN3-242ENST00000635958 ELOF1P60002 83 aaKnown RBP8.94□□□□□ -0.98
CLN3-242ENST00000635958 Q6ZQY7 126 aa8.94□□□□□ -0.98
CLN3-242ENST00000635958 DPH3Q96FX2 82 aa8.94□□□□□ -0.98
CLN3-242ENST00000635958 TRBV7-4A0A0J9YYF1 115 aa8.93□□□□□ -0.98
CLN3-242ENST00000635958 LINC01547P58512 204 aaPredicted RBP8.93□□□□□ -0.98
CLN3-242ENST00000635958 Q6ZVQ6 151 aa8.93□□□□□ -0.98
CLN3-242ENST00000635958 FAM19A1Q7Z5A9 133 aa8.92□□□□□ -0.98
CLN3-242ENST00000635958 DNAH8Q96JB1 4490 aa8.92□□□□□ -0.98
CLN3-242ENST00000635958 KRTAP10-1P60331 282 aa8.91□□□□□ -0.98
CLN3-242ENST00000635958 NKAPP1Q8N9T2 125 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms