RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 IGKV2-30P06310 120 aa9.39□□□□□ -0.91
CPSF1-212ENST00000616140 CHTF8P0CG12 524 aa9.39□□□□□ -0.91
CPSF1-212ENST00000616140 C4orf26Q17RF5 130 aa9.39□□□□□ -0.91
CPSF1-212ENST00000616140 EPM2AB3EWF7 344 aa9.39□□□□□ -0.91
CPSF1-212ENST00000616140 GCN1Q92616 2671 aaKnown RBP9.37□□□□□ -0.91
CPSF1-212ENST00000616140 C19orf73Q9NVV2 129 aa9.37□□□□□ -0.91
CPSF1-212ENST00000616140 C16orf90A8MZG2 172 aa9.37□□□□□ -0.91
CPSF1-212ENST00000616140 PRO0628Q9UI54 55 aa9.37□□□□□ -0.91
CPSF1-212ENST00000616140 FREM2Q5SZK8 3169 aa9.36□□□□□ -0.91
CPSF1-212ENST00000616140 FAM168BA1KXE4 195 aa9.36□□□□□ -0.91
CPSF1-212ENST00000616140 DNAH10OSP0CZ25 163 aa9.35□□□□□ -0.91
CPSF1-212ENST00000616140 UNC79Q9P2D8 2635 aa9.35□□□□□ -0.91
CPSF1-212ENST00000616140 SPACA4Q8TDM5 124 aa9.35□□□□□ -0.91
CPSF1-212ENST00000616140 LIMD2Q9BT23 127 aa9.35□□□□□ -0.91
CPSF1-212ENST00000616140 TP53AIP1Q9HCN2 124 aa9.35□□□□□ -0.91
CPSF1-212ENST00000616140 RPL37AP61513 92 aaKnown RBP9.35□□□□□ -0.91
CPSF1-212ENST00000616140 SERTAD4-AS1Q5TG53 156 aa9.35□□□□□ -0.91
CPSF1-212ENST00000616140 COL6A5A8TX70 2615 aa9.34□□□□□ -0.91
CPSF1-212ENST00000616140 LINC00528Q8N1L1 170 aa9.34□□□□□ -0.91
CPSF1-212ENST00000616140 TRBV7-4A0A0J9YYF1 115 aa9.34□□□□□ -0.91
CPSF1-212ENST00000616140 PRR34Q9NV39 138 aa9.34□□□□□ -0.91
CPSF1-212ENST00000616140 TRAV22A0A0B4J277 110 aa9.33□□□□□ -0.92
CPSF1-212ENST00000616140 NBDYA0A0U1RRE5 68 aa9.33□□□□□ -0.92
CPSF1-212ENST00000616140 FRYQ5TBA9 3013 aa9.32□□□□□ -0.92
CPSF1-212ENST00000616140 BAHCC1Q9P281 2608 aa9.31□□□□□ -0.92
CPSF1-212ENST00000616140 ZNF575Q86XF7 245 aa9.31□□□□□ -0.92
CPSF1-212ENST00000616140 KCNQ1DNQ9H478 68 aa9.3□□□□□ -0.92
CPSF1-212ENST00000616140 K7EQZ3 153 aa9.3□□□□□ -0.92
CPSF1-212ENST00000616140 SPAG11AQ6PDA7 123 aa9.29□□□□□ -0.92
CPSF1-212ENST00000616140 UBR5O95071 2799 aaPredicted RBP9.29□□□□□ -0.92
CPSF1-212ENST00000616140 IGLV1-50A0A075B6I6 118 aa9.27□□□□□ -0.92
CPSF1-212ENST00000616140 C9orf129Q5T035 196 aaKnown RBP9.27□□□□□ -0.93
CPSF1-212ENST00000616140 LINC00612Q8N6U2 182 aa9.27□□□□□ -0.93
CPSF1-212ENST00000616140 H3BPC8 53 aa9.27□□□□□ -0.93
CPSF1-212ENST00000616140 RTL8CO15255 209 aa9.27□□□□□ -0.93
CPSF1-212ENST00000616140 C15orf56Q8N910 161 aa9.27□□□□□ -0.93
CPSF1-212ENST00000616140 NBEAL2Q6ZNJ1 2754 aa9.25□□□□□ -0.93
CPSF1-212ENST00000616140 SZT2Q5T011 3432 aa9.24□□□□□ -0.93
CPSF1-212ENST00000616140 DNAH14Q0VDD8 3507 aa9.24□□□□□ -0.93
CPSF1-212ENST00000616140 A0A1B0GU69 56 aa9.24□□□□□ -0.93
CPSF1-212ENST00000616140 ACYP2P14621 99 aa9.24□□□□□ -0.93
CPSF1-212ENST00000616140 Q8N377 158 aa9.24□□□□□ -0.93
CPSF1-212ENST00000616140 KRTAP10-3P60369 221 aa9.23□□□□□ -0.93
CPSF1-212ENST00000616140 C7orf65Q6ZTY9 151 aa9.23□□□□□ -0.93
CPSF1-212ENST00000616140 A8MWP4 228 aa9.21□□□□□ -0.93
CPSF1-212ENST00000616140 KRTAP10-11P60412 298 aa9.21□□□□□ -0.93
CPSF1-212ENST00000616140 A0A0G2JQZ4 141 aa9.21□□□□□ -0.94
CPSF1-212ENST00000616140 A0A1W2PNN7 141 aa9.21□□□□□ -0.94
CPSF1-212ENST00000616140 IGFL1Q6UW32 110 aa9.21□□□□□ -0.94
CPSF1-212ENST00000616140 NBEAQ8NFP9 2946 aa9.2□□□□□ -0.94
CPSF1-212ENST00000616140 KLKP1Q107X0 134 aa9.2□□□□□ -0.94
CPSF1-212ENST00000616140 ERC2-IT1O76042 136 aa9.2□□□□□ -0.94
CPSF1-212ENST00000616140 LINC00313P59037 77 aa9.19□□□□□ -0.94
CPSF1-212ENST00000616140 VCANP13611 3396 aa9.19□□□□□ -0.94
CPSF1-212ENST00000616140 K7EIL1 84 aa9.18□□□□□ -0.94
CPSF1-212ENST00000616140 CR1P17927 2039 aa9.17□□□□□ -0.94
CPSF1-212ENST00000616140 CELSR3Q9NYQ7 3312 aa9.17□□□□□ -0.94
CPSF1-212ENST00000616140 KRTAP1-3Q8IUG1 177 aa9.15□□□□□ -0.94
CPSF1-212ENST00000616140 TYMSOSQ8TAI1 123 aa9.15□□□□□ -0.94
CPSF1-212ENST00000616140 A8MUN3 132 aa9.15□□□□□ -0.94
CPSF1-212ENST00000616140 H7BZZ5 65 aa9.14□□□□□ -0.95
CPSF1-212ENST00000616140 MRPL34Q9BQ48 92 aaKnown RBP9.14□□□□□ -0.95
CPSF1-212ENST00000616140 SPEGQ15772 3267 aa9.14□□□□□ -0.95
CPSF1-212ENST00000616140 PRR15Q8IV56 129 aa9.14□□□□□ -0.95
CPSF1-212ENST00000616140 LAMA1P25391 3075 aa9.13□□□□□ -0.95
CPSF1-212ENST00000616140 NSD1Q96L73 2696 aaPredicted RBP9.12□□□□□ -0.95
CPSF1-212ENST00000616140 LOC101927531A0A1B0GV80 90 aa9.12□□□□□ -0.95
CPSF1-212ENST00000616140 IGLV8-61A0A075B6I0 122 aa9.12□□□□□ -0.95
CPSF1-212ENST00000616140 DMXL2Q8TDJ6 3036 aa9.12□□□□□ -0.95
CPSF1-212ENST00000616140 ATP11AUNQ6ZP68 121 aa9.12□□□□□ -0.95
CPSF1-212ENST00000616140 CASC10Q5T4H9 136 aa9.11□□□□□ -0.95
CPSF1-212ENST00000616140 TACC2O95359 2948 aa9.11□□□□□ -0.95
CPSF1-212ENST00000616140 TLX1NBP0CAT3 122 aa9.11□□□□□ -0.95
CPSF1-212ENST00000616140 FAM104AQ969W3 186 aa9.11□□□□□ -0.95
CPSF1-212ENST00000616140 A0A1W2PNM2 257 aa9.1□□□□□ -0.95
CPSF1-212ENST00000616140 FAM229AH3BQW9 127 aa9.1□□□□□ -0.95
CPSF1-212ENST00000616140 KRTAP1-1Q07627 177 aa9.1□□□□□ -0.95
CPSF1-212ENST00000616140 C9orf163Q8N9P6 203 aa9.1□□□□□ -0.95
CPSF1-212ENST00000616140 COA5Q86WW8 74 aa9.09□□□□□ -0.95
CPSF1-212ENST00000616140 IGSF10Q6WRI0 2623 aa9.09□□□□□ -0.95
CPSF1-212ENST00000616140 FLNCQ14315 2725 aa9.08□□□□□ -0.96
CPSF1-212ENST00000616140 KALRNO60229 2985 aa9.07□□□□□ -0.96
CPSF1-212ENST00000616140 Q96NJ1 140 aa9.07□□□□□ -0.96
CPSF1-212ENST00000616140 C8orf17Q9NRJ1 99 aa9.07□□□□□ -0.96
CPSF1-212ENST00000616140 PLA2G1BP04054 148 aaKnown RBP9.07□□□□□ -0.96
CPSF1-212ENST00000616140 PLA2G2DQ9UNK4 145 aa9.07□□□□□ -0.96
CPSF1-212ENST00000616140 FLG2Q5D862 2391 aaPredicted RBP9.07□□□□□ -0.96
CPSF1-212ENST00000616140 OBSCN-AS1Q96MR7 158 aa9.06□□□□□ -0.96
CPSF1-212ENST00000616140 C8orf87E5RJ46 101 aa9.06□□□□□ -0.96
CPSF1-212ENST00000616140 ZNF861PO60384 105 aa9.05□□□□□ -0.96
CPSF1-212ENST00000616140 ANAPC11Q9NYG5 84 aa9.05□□□□□ -0.96
CPSF1-212ENST00000616140 STAB2Q8WWQ8 2551 aa9.05□□□□□ -0.96
CPSF1-212ENST00000616140 LINC00336Q6ZUF6 198 aa9.04□□□□□ -0.96
CPSF1-212ENST00000616140 LINC01600Q96MT4 127 aa9.04□□□□□ -0.96
CPSF1-212ENST00000616140 ATMQ13315 3056 aa9.03□□□□□ -0.96
CPSF1-212ENST00000616140 EYSQ5T1H1 3165 aa9.02□□□□□ -0.96
CPSF1-212ENST00000616140 FRYLO94915 3013 aa9.02□□□□□ -0.97
CPSF1-212ENST00000616140 A0A087WTM6 91 aa9.02□□□□□ -0.97
CPSF1-212ENST00000616140 A0A1B0GVX0 72 aa9.02□□□□□ -0.97
CPSF1-212ENST00000616140 WWC2-AS2Q96NR7 200 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms