RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TRGC2	P03986	189 aa		5.83	□□□□□ -1.48
LSM4-205	ENST00000597776	LGALS3	P17931	250 aa	Known RBP	5.83	□□□□□ -1.48
LSM4-205	ENST00000597776	NDUFC2	O95298	119 aa		5.82	□□□□□ -1.48
LSM4-205	ENST00000597776	FABP4	P15090	132 aa		5.82	□□□□□ -1.48
LSM4-205	ENST00000597776	NMU	P48645	174 aa		5.82	□□□□□ -1.48
LSM4-205	ENST00000597776	HERVK_113	P61574	105 aa		5.82	□□□□□ -1.48
LSM4-205	ENST00000597776	XP32	Q5T750	250 aa		5.82	□□□□□ -1.48
LSM4-205	ENST00000597776	ZNF73	O43830	326 aa	Predicted RBP	5.81	□□□□□ -1.48
LSM4-205	ENST00000597776	IGKC	P01834	107 aa		5.81	□□□□□ -1.48
LSM4-205	ENST00000597776	ADAMTSL4-AS1	Q5T5F5	129 aa		5.81	□□□□□ -1.48
LSM4-205	ENST00000597776	HSPB8	Q9UJY1	196 aa		5.81	□□□□□ -1.48
LSM4-205	ENST00000597776		A0A0J9YXY3	114 aa		5.8	□□□□□ -1.48
LSM4-205	ENST00000597776	JOSD1	Q15040	202 aa	Predicted RBP	5.8	□□□□□ -1.48
LSM4-205	ENST00000597776	LCE2C	Q5TA81	110 aa		5.78	□□□□□ -1.48
LSM4-205	ENST00000597776	LCE2D	Q5TA82	110 aa	Predicted RBP	5.78	□□□□□ -1.48
LSM4-205	ENST00000597776	HRCT1	Q6UXD1	115 aa		5.78	□□□□□ -1.48
LSM4-205	ENST00000597776	SLC7A5P1	Q8MH63	180 aa		5.78	□□□□□ -1.48
LSM4-205	ENST00000597776		E9PLD3	99 aa		5.76	□□□□□ -1.49
LSM4-205	ENST00000597776	OR13C6P	Q8NH95	151 aa		5.76	□□□□□ -1.49
LSM4-205	ENST00000597776	LITAF	Q99732	161 aa		5.76	□□□□□ -1.49
LSM4-205	ENST00000597776	C9orf92	A6NGG3	77 aa		5.75	□□□□□ -1.49
LSM4-205	ENST00000597776	COLCA2	A8K830	154 aa		5.75	□□□□□ -1.49
LSM4-205	ENST00000597776	HINT1	P49773	126 aa	Predicted RBP	5.75	□□□□□ -1.49
LSM4-205	ENST00000597776	KRTAP19-2	Q3LHN2	52 aa		5.75	□□□□□ -1.49
LSM4-205	ENST00000597776	LINC00308	Q8TCZ7	52 aa		5.75	□□□□□ -1.49
LSM4-205	ENST00000597776	FSIP2	Q5CZC0	6907 aa		5.75	□□□□□ -1.49
LSM4-205	ENST00000597776	C5orf52	A6NGY3	159 aa		5.74	□□□□□ -1.49
LSM4-205	ENST00000597776	SPRR1B	P22528	89 aa		5.74	□□□□□ -1.49
LSM4-205	ENST00000597776	PCOTH	Q58A44	107 aa		5.74	□□□□□ -1.49
LSM4-205	ENST00000597776	LIMD2	Q9BT23	127 aa		5.74	□□□□□ -1.49
LSM4-205	ENST00000597776	SPANXC	Q9NY87	97 aa		5.74	□□□□□ -1.49
LSM4-205	ENST00000597776	DHRS4-AS1	Q9P1J3	65 aa		5.73	□□□□□ -1.49
LSM4-205	ENST00000597776	CBY1	Q9Y3M2	126 aa		5.73	□□□□□ -1.49
LSM4-205	ENST00000597776	IGLV8-61	A0A075B6I0	122 aa		5.72	□□□□□ -1.49
LSM4-205	ENST00000597776		Q1RN00	199 aa		5.72	□□□□□ -1.49
LSM4-205	ENST00000597776	SLC25A34	Q6PIV7	304 aa		5.72	□□□□□ -1.49
LSM4-205	ENST00000597776	LAMTOR3	Q9UHA4	124 aa		5.72	□□□□□ -1.49
LSM4-205	ENST00000597776	SYS1-DBNDD2	H3BUS1	97 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	TIMM17B	O60830	172 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	ELOF1	P60002	83 aa	Known RBP	5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	MT1H	P80294	61 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	C6orf99	Q4VX62	202 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	DEFB105A	Q8NG35	78 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	SPANXD	Q9BXN6	97 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	TTTY13	Q9BZ97	58 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	CRCT1	Q9UGL9	99 aa		5.71	□□□□□ -1.5
LSM4-205	ENST00000597776	ZNF815P	A8K554	130 aa		5.7	□□□□□ -1.5
LSM4-205	ENST00000597776		H7C2G1	150 aa		5.7	□□□□□ -1.5
LSM4-205	ENST00000597776	COX7B	P24311	80 aa		5.7	□□□□□ -1.5
LSM4-205	ENST00000597776	TAL2	Q16559	108 aa		5.69	□□□□□ -1.5
LSM4-205	ENST00000597776		A0A0G2JQZ4	141 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BK	O60814	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BJ	P06899	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BO	P23527	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BB	P33778	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BD	P58876	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BC	P62807	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST2H2BE	Q16778	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	LINC01545	Q5VT33	79 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BH	Q93079	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BN	Q99877	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	HIST1H2BM	Q99879	126 aa		5.68	□□□□□ -1.5
LSM4-205	ENST00000597776	CD164	Q04900	197 aa		5.67	□□□□□ -1.5
LSM4-205	ENST00000597776	PRO1933	Q9H354	126 aa		5.67	□□□□□ -1.5
LSM4-205	ENST00000597776	TEX49	A0A1B0GTD5	131 aa		5.66	□□□□□ -1.5
LSM4-205	ENST00000597776	SMIM29	Q86T20	159 aa		5.66	□□□□□ -1.5
LSM4-205	ENST00000597776	LINC00518	Q8N0U6	118 aa		5.66	□□□□□ -1.5
LSM4-205	ENST00000597776	C1orf195	Q5TG92	126 aa		5.65	□□□□□ -1.5
LSM4-205	ENST00000597776	PET117	Q6UWS5	81 aa		5.65	□□□□□ -1.5
LSM4-205	ENST00000597776	C3orf79	P0CE67	100 aa		5.64	□□□□□ -1.51
LSM4-205	ENST00000597776	CFC1B	P0CG36	223 aa		5.64	□□□□□ -1.51
LSM4-205	ENST00000597776	AKR1D1	P51857	326 aa		5.64	□□□□□ -1.51
LSM4-205	ENST00000597776	IGLV5-48	A0A075B6I7	105 aa		5.63	□□□□□ -1.51
LSM4-205	ENST00000597776	TRBV7-6	A0A0J9YX20	115 aa		5.63	□□□□□ -1.51
LSM4-205	ENST00000597776	LOR	P23490	312 aa	Predicted RBP	5.63	□□□□□ -1.51
LSM4-205	ENST00000597776	KRTAP10-6	P60371	365 aa	Predicted RBP	5.63	□□□□□ -1.51
LSM4-205	ENST00000597776		Q5XG85	94 aa		5.63	□□□□□ -1.51
LSM4-205	ENST00000597776	SCGB1D4	Q6XE38	83 aa		5.63	□□□□□ -1.51
LSM4-205	ENST00000597776		A0A1B0GWB2	263 aa		5.62	□□□□□ -1.51
LSM4-205	ENST00000597776		A6NDN8	102 aa		5.62	□□□□□ -1.51
LSM4-205	ENST00000597776	KRTDAP	P60985	99 aa		5.62	□□□□□ -1.51
LSM4-205	ENST00000597776	COA6	Q5JTJ3	125 aa	Known RBP	5.62	□□□□□ -1.51
LSM4-205	ENST00000597776	RPL37	P61927	97 aa	Known RBP	5.61	□□□□□ -1.51
LSM4-205	ENST00000597776	ANKRD39	Q53RE8	183 aa		5.61	□□□□□ -1.51
LSM4-205	ENST00000597776	ATOH7	Q8N100	152 aa		5.6	□□□□□ -1.51
LSM4-205	ENST00000597776	FLG	P20930	4061 aa	Predicted RBP	5.59	□□□□□ -1.51
LSM4-205	ENST00000597776		M0R2T5	61 aa		5.59	□□□□□ -1.51
LSM4-205	ENST00000597776	IFITM1	P13164	125 aa		5.59	□□□□□ -1.51
LSM4-205	ENST00000597776	MUSTN1	Q8IVN3	82 aa		5.59	□□□□□ -1.51
LSM4-205	ENST00000597776	SMIM11B	Q8TCY0	68 aa		5.59	□□□□□ -1.51
LSM4-205	ENST00000597776	C20orf202	A1L168	122 aa		5.58	□□□□□ -1.52
LSM4-205	ENST00000597776	COX6B2	Q6YFQ2	88 aa		5.58	□□□□□ -1.52
LSM4-205	ENST00000597776	PCP2	Q8IVA1	136 aa		5.58	□□□□□ -1.52
LSM4-205	ENST00000597776	COPS9	Q8WXC6	57 aa		5.58	□□□□□ -1.52
LSM4-205	ENST00000597776		A4D1N5	150 aa		5.57	□□□□□ -1.52
LSM4-205	ENST00000597776	TCL1B	O95988	128 aa		5.56	□□□□□ -1.52
LSM4-205	ENST00000597776		Q6ZVH6	145 aa		5.56	□□□□□ -1.52
LSM4-205	ENST00000597776	TRAV13-2	A0A0B4J235	113 aa		5.55	□□□□□ -1.52
LSM4-205	ENST00000597776	NHP2	Q9NX24	153 aa	Known RBP	5.55	□□□□□ -1.52

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