RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 C3orf79P0CE67 100 aa8.78□□□□□ -1
LIG1-214ENST00000597146 MT1HP80294 61 aa8.78□□□□□ -1
LIG1-214ENST00000597146 KRTAP13-3Q3SY46 172 aa8.78□□□□□ -1
LIG1-214ENST00000597146 SMCR5Q8TEV8 140 aa8.78□□□□□ -1
LIG1-214ENST00000597146 SPANXB1Q9NS25 103 aaPredicted RBP8.78□□□□□ -1
LIG1-214ENST00000597146 LOC107984156A0A0G2JMH3 177 aa8.77□□□□□ -1.01
LIG1-214ENST00000597146 ARL17AQ8IVW1 177 aa8.77□□□□□ -1.01
LIG1-214ENST00000597146 ZNF815PA8K554 130 aa8.76□□□□□ -1.01
LIG1-214ENST00000597146 NDUFC2O95298 119 aa8.76□□□□□ -1.01
LIG1-214ENST00000597146 HINT1P49773 126 aaPredicted RBP8.76□□□□□ -1.01
LIG1-214ENST00000597146 C4orf48Q5BLP8 95 aa8.76□□□□□ -1.01
LIG1-214ENST00000597146 ADAMTSL4-AS1Q5T5F5 129 aa8.76□□□□□ -1.01
LIG1-214ENST00000597146 OR13C6PQ8NH95 151 aa8.76□□□□□ -1.01
LIG1-214ENST00000597146 CBY1Q9Y3M2 126 aa8.76□□□□□ -1.01
LIG1-214ENST00000597146 SEC61BP60468 96 aaKnown RBP8.75□□□□□ -1.01
LIG1-214ENST00000597146 COA6Q5JTJ3 125 aaKnown RBP8.75□□□□□ -1.01
LIG1-214ENST00000597146 LORP23490 312 aaPredicted RBP8.74□□□□□ -1.01
LIG1-214ENST00000597146 KRTAP19-2Q3LHN2 52 aa8.74□□□□□ -1.01
LIG1-214ENST00000597146 SPRR4Q96PI1 79 aa8.74□□□□□ -1.01
LIG1-214ENST00000597146 CFC1BP0CG36 223 aa8.73□□□□□ -1.01
LIG1-214ENST00000597146 SPRR1AP35321 89 aa8.73□□□□□ -1.01
LIG1-214ENST00000597146 AKR1D1P51857 326 aa8.73□□□□□ -1.01
LIG1-214ENST00000597146 JOSD1Q15040 202 aaPredicted RBP8.73□□□□□ -1.01
LIG1-214ENST00000597146 SCGB1D4Q6XE38 83 aa8.73□□□□□ -1.01
LIG1-214ENST00000597146 TIMM17BO60830 172 aa8.72□□□□□ -1.01
LIG1-214ENST00000597146 S100A2P29034 98 aa8.72□□□□□ -1.01
LIG1-214ENST00000597146 GAGE2AQ6NT46 116 aa8.72□□□□□ -1.01
LIG1-214ENST00000597146 FP248Q71RG6 208 aaPredicted RBP8.72□□□□□ -1.01
LIG1-214ENST00000597146 TRAV23DV6A0A075B6W5 121 aa8.71□□□□□ -1.02
LIG1-214ENST00000597146 B5MCH6 92 aa8.71□□□□□ -1.02
LIG1-214ENST00000597146 LINC00308Q8TCZ7 52 aa8.71□□□□□ -1.02
LIG1-214ENST00000597146 KRTAP10-6P60371 365 aaPredicted RBP8.7□□□□□ -1.02
LIG1-214ENST00000597146 CTAG1AP78358 180 aa8.7□□□□□ -1.02
LIG1-214ENST00000597146 SOSTDC1Q6X4U4 206 aa8.7□□□□□ -1.02
LIG1-214ENST00000597146 ATOH7Q8N100 152 aa8.7□□□□□ -1.02
LIG1-214ENST00000597146 C3orf22Q8N5N4 141 aa8.7□□□□□ -1.02
LIG1-214ENST00000597146 SPANXCQ9NY87 97 aa8.7□□□□□ -1.02
LIG1-214ENST00000597146 IGLV6-57P01721 117 aa8.69□□□□□ -1.02
LIG1-214ENST00000597146 S100A6P06703 90 aa8.69□□□□□ -1.02
LIG1-214ENST00000597146 SPAG11AQ6PDA7 123 aa8.69□□□□□ -1.02
LIG1-214ENST00000597146 COPS9Q8WXC6 57 aa8.69□□□□□ -1.02
LIG1-214ENST00000597146 TTTY13Q9BZ97 58 aa8.69□□□□□ -1.02
LIG1-214ENST00000597146 KRTAP4-16G5E9R7 235 aaPredicted RBP8.68□□□□□ -1.02
LIG1-214ENST00000597146 ZNF73O43830 326 aaPredicted RBP8.68□□□□□ -1.02
LIG1-214ENST00000597146 LINC00518Q8N0U6 118 aa8.68□□□□□ -1.02
LIG1-214ENST00000597146 EIF4EBP3O60516 100 aaPredicted RBP8.67□□□□□ -1.02
LIG1-214ENST00000597146 Q6ZRX8 168 aa8.67□□□□□ -1.02
LIG1-214ENST00000597146 HSBP1L1C9JCN9 74 aa8.66□□□□□ -1.02
LIG1-214ENST00000597146 IGLV9-49A0A0B4J1Y8 123 aa8.65□□□□□ -1.02
LIG1-214ENST00000597146 SNRPEP62304 92 aaKnown RBP8.65□□□□□ -1.02
LIG1-214ENST00000597146 LITAFQ99732 161 aa8.65□□□□□ -1.02
LIG1-214ENST00000597146 SSPOA2VEC9 5147 aa8.64□□□□□ -1.03
LIG1-214ENST00000597146 ERC2-IT1O76042 136 aa8.64□□□□□ -1.03
LIG1-214ENST00000597146 ANKRD39Q53RE8 183 aa8.64□□□□□ -1.03
LIG1-214ENST00000597146 SPANXDQ9BXN6 97 aa8.64□□□□□ -1.03
LIG1-214ENST00000597146 Q8NBF4 154 aa8.63□□□□□ -1.03
LIG1-214ENST00000597146 Q9BRP9 147 aa8.63□□□□□ -1.03
LIG1-214ENST00000597146 A6NDN8 102 aa8.62□□□□□ -1.03
LIG1-214ENST00000597146 IFITM1P13164 125 aa8.62□□□□□ -1.03
LIG1-214ENST00000597146 TMA7Q9Y2S6 64 aaKnown RBP8.62□□□□□ -1.03
LIG1-214ENST00000597146 Q6ZVH6 145 aa8.61□□□□□ -1.03
LIG1-214ENST00000597146 HIST3H2BBQ8N257 126 aa8.61□□□□□ -1.03
LIG1-214ENST00000597146 MOBPQ13875 183 aa8.6□□□□□ -1.03
LIG1-214ENST00000597146 LINC00483Q53H64 154 aa8.6□□□□□ -1.03
LIG1-214ENST00000597146 C9orf153Q5TBE3 101 aa8.6□□□□□ -1.03
LIG1-214ENST00000597146 SSBP3-AS1Q7Z2R9 100 aa8.6□□□□□ -1.03
LIG1-214ENST00000597146 PCP2Q8IVA1 136 aa8.6□□□□□ -1.03
LIG1-214ENST00000597146 HIST1H2BLQ99880 126 aa8.6□□□□□ -1.03
LIG1-214ENST00000597146 DHRS4-AS1Q9P1J3 65 aa8.6□□□□□ -1.03
LIG1-214ENST00000597146 COX7BP24311 80 aa8.59□□□□□ -1.03
LIG1-214ENST00000597146 MUSTN1Q8IVN3 82 aa8.59□□□□□ -1.03
LIG1-214ENST00000597146 LOC105371267A0A1B0GV96 52 aa8.58□□□□□ -1.04
LIG1-214ENST00000597146 SCGB1D1O95968 90 aa8.58□□□□□ -1.04
LIG1-214ENST00000597146 SPINK1P00995 79 aa8.58□□□□□ -1.04
LIG1-214ENST00000597146 XP32Q5T750 250 aa8.58□□□□□ -1.04
LIG1-214ENST00000597146 USH2AO75445 5202 aa8.58□□□□□ -1.04
LIG1-214ENST00000597146 C5orf52A6NGY3 159 aa8.57□□□□□ -1.04
LIG1-214ENST00000597146 TAL2Q16559 108 aa8.57□□□□□ -1.04
LIG1-214ENST00000597146 C6orf99Q4VX62 202 aa8.57□□□□□ -1.04
LIG1-214ENST00000597146 SLC25A34Q6PIV7 304 aa8.57□□□□□ -1.04
LIG1-214ENST00000597146 ST20-AS1Q8NBB2 130 aa8.57□□□□□ -1.04
LIG1-214ENST00000597146 DEFB105AQ8NG35 78 aa8.56□□□□□ -1.04
LIG1-214ENST00000597146 FLGP20930 4061 aaPredicted RBP8.55□□□□□ -1.04
LIG1-214ENST00000597146 TRAV13-2A0A0B4J235 113 aa8.54□□□□□ -1.04
LIG1-214ENST00000597146 M0R2T5 61 aa8.54□□□□□ -1.04
LIG1-214ENST00000597146 LAMTOR3Q9UHA4 124 aa8.54□□□□□ -1.04
LIG1-214ENST00000597146 VAMP3Q15836 100 aa8.52□□□□□ -1.05
LIG1-214ENST00000597146 TRBV7-6A0A0J9YX20 115 aa8.51□□□□□ -1.05
LIG1-214ENST00000597146 A0A1B0GWB2 263 aa8.51□□□□□ -1.05
LIG1-214ENST00000597146 ELOF1P60002 83 aaKnown RBP8.51□□□□□ -1.05
LIG1-214ENST00000597146 A4D1N5 150 aa8.49□□□□□ -1.05
LIG1-214ENST00000597146 SLC25A20O43772 301 aa8.49□□□□□ -1.05
LIG1-214ENST00000597146 IGLV8-61A0A075B6I0 122 aa8.48□□□□□ -1.05
LIG1-214ENST00000597146 PCOTHQ58A44 107 aa8.48□□□□□ -1.05
LIG1-214ENST00000597146 NHP2Q9NX24 153 aaKnown RBP8.48□□□□□ -1.05
LIG1-214ENST00000597146 TEX49A0A1B0GTD5 131 aa8.47□□□□□ -1.05
LIG1-214ENST00000597146 HRCT1Q6UXD1 115 aa8.47□□□□□ -1.05
LIG1-214ENST00000597146 HIST1H4GQ99525 98 aa8.47□□□□□ -1.05
LIG1-214ENST00000597146 FCGBPQ9Y6R7 5405 aaPredicted RBP8.47□□□□□ -1.05
LIG1-214ENST00000597146 Q1RN00 199 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms