RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 C9orf153Q5TBE3 101 aa13.25□□□□□ -0.29
LSM4-202ENST00000593564 ZNF73O43830 326 aaPredicted RBP13.24□□□□□ -0.29
LSM4-202ENST00000593564 TRGC2P03986 189 aa13.24□□□□□ -0.29
LSM4-202ENST00000593564 HSPB8Q9UJY1 196 aa13.24□□□□□ -0.29
LSM4-202ENST00000593564 IGKCP01834 107 aa13.23□□□□□ -0.29
LSM4-202ENST00000593564 PMCHL2Q9BQD1 86 aa13.23□□□□□ -0.29
LSM4-202ENST00000593564 SOSTDC1Q6X4U4 206 aa13.22□□□□□ -0.29
LSM4-202ENST00000593564 C5orf52A6NGY3 159 aa13.21□□□□□ -0.29
LSM4-202ENST00000593564 EIF4EBP3O60516 100 aaPredicted RBP13.2□□□□□ -0.3
LSM4-202ENST00000593564 FABP4P15090 132 aa13.2□□□□□ -0.3
LSM4-202ENST00000593564 ST20-AS1Q8NBB2 130 aa13.2□□□□□ -0.3
LSM4-202ENST00000593564 ADAMTSL4-AS1Q5T5F5 129 aa13.19□□□□□ -0.3
LSM4-202ENST00000593564 A0A0J9YXY3 114 aa13.18□□□□□ -0.3
LSM4-202ENST00000593564 NPC2P61916 151 aa13.18□□□□□ -0.3
LSM4-202ENST00000593564 LCE2DQ5TA82 110 aaPredicted RBP13.18□□□□□ -0.3
LSM4-202ENST00000593564 CBY1Q9Y3M2 126 aa13.17□□□□□ -0.3
LSM4-202ENST00000593564 HINT1P49773 126 aaPredicted RBP13.16□□□□□ -0.3
LSM4-202ENST00000593564 E9PLD3 99 aa13.14□□□□□ -0.31
LSM4-202ENST00000593564 SPRR1BP22528 89 aa13.13□□□□□ -0.31
LSM4-202ENST00000593564 LIMD2Q9BT23 127 aa13.11□□□□□ -0.31
LSM4-202ENST00000593564 LCE2CQ5TA81 110 aa13.1□□□□□ -0.31
LSM4-202ENST00000593564 SLC25A34Q6PIV7 304 aa13.1□□□□□ -0.31
LSM4-202ENST00000593564 SPANXCQ9NY87 97 aa13.1□□□□□ -0.31
LSM4-202ENST00000593564 DHRS4-AS1Q9P1J3 65 aa13.09□□□□□ -0.31
LSM4-202ENST00000593564 LINC00308Q8TCZ7 52 aa13.08□□□□□ -0.32
LSM4-202ENST00000593564 LITAFQ99732 161 aa13.08□□□□□ -0.32
LSM4-202ENST00000593564 OR13C6PQ8NH95 151 aa13.07□□□□□ -0.32
LSM4-202ENST00000593564 KRTAP19-2Q3LHN2 52 aa13.05□□□□□ -0.32
LSM4-202ENST00000593564 HRCT1Q6UXD1 115 aa13.05□□□□□ -0.32
LSM4-202ENST00000593564 LAMTOR3Q9UHA4 124 aa13.05□□□□□ -0.32
LSM4-202ENST00000593564 TIMM17BO60830 172 aa13.04□□□□□ -0.32
LSM4-202ENST00000593564 SPANXDQ9BXN6 97 aa13.04□□□□□ -0.32
LSM4-202ENST00000593564 FSIP2Q5CZC0 6907 aa13.04□□□□□ -0.32
LSM4-202ENST00000593564 PCOTHQ58A44 107 aa13.02□□□□□ -0.33
LSM4-202ENST00000593564 COLCA2A8K830 154 aa13.01□□□□□ -0.33
LSM4-202ENST00000593564 SYS1-DBNDD2H3BUS1 97 aa13□□□□□ -0.33
LSM4-202ENST00000593564 ELOF1P60002 83 aaKnown RBP13□□□□□ -0.33
LSM4-202ENST00000593564 C9orf92A6NGG3 77 aa12.99□□□□□ -0.33
LSM4-202ENST00000593564 IGLV8-61A0A075B6I0 122 aa12.98□□□□□ -0.33
LSM4-202ENST00000593564 COX7BP24311 80 aa12.98□□□□□ -0.33
LSM4-202ENST00000593564 CD164Q04900 197 aa12.98□□□□□ -0.33
LSM4-202ENST00000593564 C6orf99Q4VX62 202 aa12.97□□□□□ -0.33
LSM4-202ENST00000593564 CRCT1Q9UGL9 99 aa12.97□□□□□ -0.33
LSM4-202ENST00000593564 ZNF815PA8K554 130 aa12.96□□□□□ -0.33
LSM4-202ENST00000593564 MT1HP80294 61 aa12.96□□□□□ -0.33
LSM4-202ENST00000593564 LINC00518Q8N0U6 118 aa12.96□□□□□ -0.33
LSM4-202ENST00000593564 TAL2Q16559 108 aa12.95□□□□□ -0.34
LSM4-202ENST00000593564 Q1RN00 199 aa12.94□□□□□ -0.34
LSM4-202ENST00000593564 LINC01545Q5VT33 79 aa12.94□□□□□ -0.34
LSM4-202ENST00000593564 PRO1933Q9H354 126 aa12.94□□□□□ -0.34
LSM4-202ENST00000593564 TEX49A0A1B0GTD5 131 aa12.92□□□□□ -0.34
LSM4-202ENST00000593564 DEFB105AQ8NG35 78 aa12.92□□□□□ -0.34
LSM4-202ENST00000593564 TTTY13Q9BZ97 58 aa12.92□□□□□ -0.34
LSM4-202ENST00000593564 Q5XG85 94 aa12.91□□□□□ -0.34
LSM4-202ENST00000593564 PET117Q6UWS5 81 aa12.91□□□□□ -0.34
LSM4-202ENST00000593564 TRBV7-6A0A0J9YX20 115 aa12.9□□□□□ -0.34
LSM4-202ENST00000593564 H7C2G1 150 aa12.9□□□□□ -0.34
LSM4-202ENST00000593564 CFC1BP0CG36 223 aa12.9□□□□□ -0.34
LSM4-202ENST00000593564 HIST1H2BKO60814 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BJP06899 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BOP23527 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BBP33778 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 AKR1D1P51857 326 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BDP58876 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BCP62807 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST2H2BEQ16778 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.87□□□□□ -0.35
LSM4-202ENST00000593564 SMIM29Q86T20 159 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BHQ93079 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BNQ99877 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 HIST1H2BMQ99879 126 aa12.87□□□□□ -0.35
LSM4-202ENST00000593564 A0A1B0GWB2 263 aa12.85□□□□□ -0.35
LSM4-202ENST00000593564 C1orf195Q5TG92 126 aa12.85□□□□□ -0.35
LSM4-202ENST00000593564 IGLV5-48A0A075B6I7 105 aa12.84□□□□□ -0.35
LSM4-202ENST00000593564 SLC7A5P1Q8MH63 180 aa12.84□□□□□ -0.35
LSM4-202ENST00000593564 C3orf79P0CE67 100 aa12.81□□□□□ -0.36
LSM4-202ENST00000593564 SCGB1D4Q6XE38 83 aa12.81□□□□□ -0.36
LSM4-202ENST00000593564 COPS9Q8WXC6 57 aa12.81□□□□□ -0.36
LSM4-202ENST00000593564 IFITM1P13164 125 aa12.79□□□□□ -0.36
LSM4-202ENST00000593564 LORP23490 312 aaPredicted RBP12.79□□□□□ -0.36
LSM4-202ENST00000593564 A0A0G2JQZ4 141 aa12.78□□□□□ -0.36
LSM4-202ENST00000593564 A6NDN8 102 aa12.78□□□□□ -0.36
LSM4-202ENST00000593564 RPL37P61927 97 aaKnown RBP12.78□□□□□ -0.36
LSM4-202ENST00000593564 KRTAP10-6P60371 365 aaPredicted RBP12.77□□□□□ -0.37
LSM4-202ENST00000593564 A4D1N5 150 aa12.76□□□□□ -0.37
LSM4-202ENST00000593564 Q6ZVH6 145 aa12.75□□□□□ -0.37
LSM4-202ENST00000593564 KRTDAPP60985 99 aa12.73□□□□□ -0.37
LSM4-202ENST00000593564 NHP2Q9NX24 153 aaKnown RBP12.73□□□□□ -0.37
LSM4-202ENST00000593564 ANKRD39Q53RE8 183 aa12.72□□□□□ -0.37
LSM4-202ENST00000593564 MUSTN1Q8IVN3 82 aa12.71□□□□□ -0.37
LSM4-202ENST00000593564 TCL1BO95988 128 aa12.7□□□□□ -0.38
LSM4-202ENST00000593564 FLGP20930 4061 aaPredicted RBP12.69□□□□□ -0.38
LSM4-202ENST00000593564 C20orf202A1L168 122 aa12.69□□□□□ -0.38
LSM4-202ENST00000593564 COA6Q5JTJ3 125 aaKnown RBP12.69□□□□□ -0.38
LSM4-202ENST00000593564 TRAV13-2A0A0B4J235 113 aa12.68□□□□□ -0.38
LSM4-202ENST00000593564 SMIM11BQ8TCY0 68 aa12.68□□□□□ -0.38
LSM4-202ENST00000593564 M0R2T5 61 aa12.67□□□□□ -0.38
LSM4-202ENST00000593564 COX6B2Q6YFQ2 88 aa12.67□□□□□ -0.38
LSM4-202ENST00000593564 PCP2Q8IVA1 136 aa12.65□□□□□ -0.38
LSM4-202ENST00000593564 F8WEM9 126 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms