RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 KRTAP7-1Q8IUC3 87 aa12.69□□□□□ -0.38
CLIP3-206ENST00000593074 PSCAO43653 123 aa12.68□□□□□ -0.38
CLIP3-206ENST00000593074 FAM236AA0A1B0GUQ0 79 aa12.67□□□□□ -0.38
CLIP3-206ENST00000593074 FAM236BA0A1B0GV22 79 aa12.67□□□□□ -0.38
CLIP3-206ENST00000593074 IGLV1-50A0A075B6I6 118 aa12.66□□□□□ -0.38
CLIP3-206ENST00000593074 DSCR8Q96T75 97 aa12.66□□□□□ -0.38
CLIP3-206ENST00000593074 PRYO14603 147 aa12.66□□□□□ -0.38
CLIP3-206ENST00000593074 PDE6GP18545 87 aa12.66□□□□□ -0.38
CLIP3-206ENST00000593074 KRTAP4-16G5E9R7 235 aaPredicted RBP12.65□□□□□ -0.39
CLIP3-206ENST00000593074 CNBPP62633 177 aaKnown RBP12.65□□□□□ -0.39
CLIP3-206ENST00000593074 SPRR1AP35321 89 aa12.64□□□□□ -0.39
CLIP3-206ENST00000593074 TRBV7-4A0A0J9YYF1 115 aa12.63□□□□□ -0.39
CLIP3-206ENST00000593074 RPL37AP8A6NKH3 93 aa12.63□□□□□ -0.39
CLIP3-206ENST00000593074 IGKV3D-7A0A0C4DH55 119 aa12.63□□□□□ -0.39
CLIP3-206ENST00000593074 DNAH10Q8IVF4 4471 aa12.62□□□□□ -0.39
CLIP3-206ENST00000593074 CSMD3Q7Z407 3707 aa12.62□□□□□ -0.39
CLIP3-206ENST00000593074 Q6ZRX8 168 aa12.62□□□□□ -0.39
CLIP3-206ENST00000593074 MRPL55Q7Z7F7 128 aaKnown RBP12.62□□□□□ -0.39
CLIP3-206ENST00000593074 ATP5EP2Q5VTU8 51 aa12.61□□□□□ -0.39
CLIP3-206ENST00000593074 FAM19A5Q7Z5A7 132 aaPredicted RBP12.61□□□□□ -0.39
CLIP3-206ENST00000593074 NBDYA0A0U1RRE5 68 aa12.61□□□□□ -0.39
CLIP3-206ENST00000593074 B5MCH6 92 aa12.6□□□□□ -0.39
CLIP3-206ENST00000593074 UBL5Q9BZL1 73 aa12.6□□□□□ -0.39
CLIP3-206ENST00000593074 M0R2N4 97 aa12.6□□□□□ -0.39
CLIP3-206ENST00000593074 HIST1H4AP62805 103 aaKnown RBP12.6□□□□□ -0.39
CLIP3-206ENST00000593074 DHRS4-AS1Q9P1J3 65 aa12.6□□□□□ -0.39
CLIP3-206ENST00000593074 C14orf177Q52M58 125 aa12.59□□□□□ -0.39
CLIP3-206ENST00000593074 C16orf90A8MZG2 172 aa12.58□□□□□ -0.4
CLIP3-206ENST00000593074 Q9BRP9 147 aa12.57□□□□□ -0.4
CLIP3-206ENST00000593074 A0A096LNI7 61 aa12.57□□□□□ -0.4
CLIP3-206ENST00000593074 ETDCA0A1B0GVM5 59 aa12.57□□□□□ -0.4
CLIP3-206ENST00000593074 DNAH7Q8WXX0 4024 aa12.55□□□□□ -0.4
CLIP3-206ENST00000593074 PLECQ15149 4684 aaKnown RBP12.55□□□□□ -0.4
CLIP3-206ENST00000593074 CCDC179H3BU77 68 aa12.54□□□□□ -0.4
CLIP3-206ENST00000593074 LINC01547P58512 204 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-206ENST00000593074 Q8N377 158 aa12.53□□□□□ -0.4
CLIP3-206ENST00000593074 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.52□□□□□ -0.41
CLIP3-206ENST00000593074 MEGF8Q7Z7M0 2845 aa12.51□□□□□ -0.41
CLIP3-206ENST00000593074 A0A087WVE0 104 aa12.51□□□□□ -0.41
CLIP3-206ENST00000593074 Q6ZVQ6 151 aa12.51□□□□□ -0.41
CLIP3-206ENST00000593074 PRKDCP78527 4128 aaKnown RBP12.51□□□□□ -0.41
CLIP3-206ENST00000593074 REG3GQ6UW15 175 aa12.5□□□□□ -0.41
CLIP3-206ENST00000593074 TENM2Q9NT68 2774 aa12.5□□□□□ -0.41
CLIP3-206ENST00000593074 IGKV2-24A0A0C4DH68 120 aa12.5□□□□□ -0.41
CLIP3-206ENST00000593074 LRCOL1A6NCL2 159 aa12.5□□□□□ -0.41
CLIP3-206ENST00000593074 DEFB105AQ8NG35 78 aa12.49□□□□□ -0.41
CLIP3-206ENST00000593074 DNHD1Q96M86 4753 aa12.49□□□□□ -0.41
CLIP3-206ENST00000593074 ATOX1O00244 68 aa12.49□□□□□ -0.41
CLIP3-206ENST00000593074 KRTAP21-3Q3LHN1 58 aa12.49□□□□□ -0.41
CLIP3-206ENST00000593074 Q6ZRN7 208 aaPredicted RBP12.49□□□□□ -0.41
CLIP3-206ENST00000593074 IGLV5-48A0A075B6I7 105 aa12.48□□□□□ -0.41
CLIP3-206ENST00000593074 A0A1W2PNN7 141 aa12.48□□□□□ -0.41
CLIP3-206ENST00000593074 STARD9Q9P2P6 4700 aa12.45□□□□□ -0.42
CLIP3-206ENST00000593074 ERC2-IT1O76042 136 aa12.44□□□□□ -0.42
CLIP3-206ENST00000593074 FAM19A1Q7Z5A9 133 aa12.44□□□□□ -0.42
CLIP3-206ENST00000593074 C9orf163Q8N9P6 203 aa12.44□□□□□ -0.42
CLIP3-206ENST00000593074 ST20-AS1Q8NBB2 130 aa12.44□□□□□ -0.42
CLIP3-206ENST00000593074 UBE2BP63146 152 aa12.44□□□□□ -0.42
CLIP3-206ENST00000593074 CXCL6P80162 114 aa12.42□□□□□ -0.42
CLIP3-206ENST00000593074 TNP2Q05952 138 aa12.42□□□□□ -0.42
CLIP3-206ENST00000593074 HAMPP81172 84 aa12.42□□□□□ -0.42
CLIP3-206ENST00000593074 C3orf22Q8N5N4 141 aa12.42□□□□□ -0.42
CLIP3-206ENST00000593074 PKIGQ9Y2B9 76 aa12.42□□□□□ -0.42
CLIP3-206ENST00000593074 VPS13DQ5THJ4 4388 aa12.42□□□□□ -0.42
CLIP3-206ENST00000593074 UQCRQO14949 82 aa12.41□□□□□ -0.42
CLIP3-206ENST00000593074 CHTF8P0CG12 524 aa12.41□□□□□ -0.42
CLIP3-206ENST00000593074 COX7CP15954 63 aa12.38□□□□□ -0.43
CLIP3-206ENST00000593074 Q6ZR54 194 aa12.36□□□□□ -0.43
CLIP3-206ENST00000593074 PHF5AQ7RTV0 110 aaKnown RBP12.35□□□□□ -0.43
CLIP3-206ENST00000593074 LINC00474Q9P2X8 69 aa12.35□□□□□ -0.43
CLIP3-206ENST00000593074 PRLHP81277 87 aa12.34□□□□□ -0.43
CLIP3-206ENST00000593074 A0A087WTM6 91 aa12.34□□□□□ -0.43
CLIP3-206ENST00000593074 A0A1B0GW54 56 aa12.34□□□□□ -0.43
CLIP3-206ENST00000593074 C1orf137Q5JT78 98 aa12.33□□□□□ -0.44
CLIP3-206ENST00000593074 KRTAP11-1Q8IUC1 163 aa12.33□□□□□ -0.44
CLIP3-206ENST00000593074 SERP2Q8N6R1 65 aa12.33□□□□□ -0.44
CLIP3-206ENST00000593074 SMIM29Q86T20 159 aa12.33□□□□□ -0.44
CLIP3-206ENST00000593074 FUSP35637 526 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLIP3-206ENST00000593074 C9orf153Q5TBE3 101 aa12.32□□□□□ -0.44
CLIP3-206ENST00000593074 A0A1W2PNM2 257 aa12.31□□□□□ -0.44
CLIP3-206ENST00000593074 C3orf84H3BNL1 204 aa12.31□□□□□ -0.44
CLIP3-206ENST00000593074 H0Y9J4 135 aa12.3□□□□□ -0.44
CLIP3-206ENST00000593074 NREPQ16612 68 aa12.3□□□□□ -0.44
CLIP3-206ENST00000593074 SCXQ7RTU7 201 aa12.3□□□□□ -0.44
CLIP3-206ENST00000593074 Q8NBF4 154 aa12.3□□□□□ -0.44
CLIP3-206ENST00000593074 PANO1I0J062 215 aa12.29□□□□□ -0.44
CLIP3-206ENST00000593074 SS18L2Q9UHA2 77 aa12.28□□□□□ -0.44
CLIP3-206ENST00000593074 LY6G6CO95867 125 aa12.28□□□□□ -0.44
CLIP3-206ENST00000593074 CRYGAP11844 174 aa12.28□□□□□ -0.44
CLIP3-206ENST00000593074 DPH3Q96FX2 82 aa12.28□□□□□ -0.44
CLIP3-206ENST00000593074 SPRR4Q96PI1 79 aa12.28□□□□□ -0.44
CLIP3-206ENST00000593074 HIGD2AQ9BW72 106 aa12.28□□□□□ -0.44
CLIP3-206ENST00000593074 FBN3Q75N90 2809 aa12.27□□□□□ -0.45
CLIP3-206ENST00000593074 C1orf134Q5TEV5 83 aa12.26□□□□□ -0.45
CLIP3-206ENST00000593074 BCE1O60756 84 aa12.26□□□□□ -0.45
CLIP3-206ENST00000593074 WWC2-AS2Q96NR7 200 aa12.26□□□□□ -0.45
CLIP3-206ENST00000593074 EPM2AB3EWF7 344 aa12.25□□□□□ -0.45
CLIP3-206ENST00000593074 F8WEM9 126 aa12.25□□□□□ -0.45
CLIP3-206ENST00000593074 SPACA4Q8TDM5 124 aa12.25□□□□□ -0.45
CLIP3-206ENST00000593074 LINC00476Q8WZB0 136 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms