RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 C21orf62-AS1Q17RA5 79 aa7.3□□□□□ -1.24
LIG3-204ENST00000585740 GAGE2AQ6NT46 116 aa7.3□□□□□ -1.24
LIG3-204ENST00000585740 Q6Q795 121 aa7.3□□□□□ -1.24
LIG3-204ENST00000585740 C7orf33Q8WU49 177 aa7.3□□□□□ -1.24
LIG3-204ENST00000585740 KRTAP1-5Q9BYS1 174 aa7.3□□□□□ -1.24
LIG3-204ENST00000585740 NBDYA0A0U1RRE5 68 aa7.29□□□□□ -1.24
LIG3-204ENST00000585740 GAGE2BQ13066 116 aa7.29□□□□□ -1.24
LIG3-204ENST00000585740 SERTAD4-AS1Q5TG53 156 aa7.29□□□□□ -1.24
LIG3-204ENST00000585740 LINC00528Q8N1L1 170 aa7.29□□□□□ -1.24
LIG3-204ENST00000585740 C14orf132Q9NPU4 83 aa7.29□□□□□ -1.24
LIG3-204ENST00000585740 LYSTQ99698 3801 aa7.29□□□□□ -1.24
LIG3-204ENST00000585740 Q6ZQY7 126 aa7.28□□□□□ -1.24
LIG3-204ENST00000585740 LINC00643Q86TS7 51 aa7.28□□□□□ -1.24
LIG3-204ENST00000585740 DNAH7Q8WXX0 4024 aa7.28□□□□□ -1.24
LIG3-204ENST00000585740 CCKP06307 115 aa7.27□□□□□ -1.25
LIG3-204ENST00000585740 SDIM1Q6ZPB5 146 aa7.27□□□□□ -1.25
LIG3-204ENST00000585740 PDE6GP18545 87 aa7.26□□□□□ -1.25
LIG3-204ENST00000585740 RBM3P98179 157 aaKnown RBP7.26□□□□□ -1.25
LIG3-204ENST00000585740 LAMTOR3Q9UHA4 124 aa7.26□□□□□ -1.25
LIG3-204ENST00000585740 PCLOQ9Y6V0 5065 aa7.26□□□□□ -1.25
LIG3-204ENST00000585740 IGLV1-50A0A075B6I6 118 aa7.25□□□□□ -1.25
LIG3-204ENST00000585740 C16orf90A8MZG2 172 aa7.25□□□□□ -1.25
LIG3-204ENST00000585740 MRPL55Q7Z7F7 128 aaKnown RBP7.25□□□□□ -1.25
LIG3-204ENST00000585740 IMUPQ9GZP8 106 aa7.25□□□□□ -1.25
LIG3-204ENST00000585740 DHRS4-AS1Q9P1J3 65 aa7.25□□□□□ -1.25
LIG3-204ENST00000585740 CSMD3Q7Z407 3707 aa7.25□□□□□ -1.25
LIG3-204ENST00000585740 LOC110117498A0A087WWA1 95 aa7.24□□□□□ -1.25
LIG3-204ENST00000585740 SPRR1AP35321 89 aa7.24□□□□□ -1.25
LIG3-204ENST00000585740 VPS13DQ5THJ4 4388 aa7.23□□□□□ -1.25
LIG3-204ENST00000585740 STARD9Q9P2P6 4700 aa7.23□□□□□ -1.25
LIG3-204ENST00000585740 TRBV7-7A0A0K0K1E9 115 aa7.23□□□□□ -1.25
LIG3-204ENST00000585740 ETDCA0A1B0GVM5 59 aa7.23□□□□□ -1.25
LIG3-204ENST00000585740 PLECQ15149 4684 aaKnown RBP7.23□□□□□ -1.25
LIG3-204ENST00000585740 FAM168BA1KXE4 195 aa7.22□□□□□ -1.25
LIG3-204ENST00000585740 FAM19A5Q7Z5A7 132 aaPredicted RBP7.22□□□□□ -1.25
LIG3-204ENST00000585740 DSCR8Q96T75 97 aa7.22□□□□□ -1.25
LIG3-204ENST00000585740 HERC2O95714 4834 aa7.22□□□□□ -1.25
LIG3-204ENST00000585740 LRCOL1A6NCL2 159 aa7.21□□□□□ -1.26
LIG3-204ENST00000585740 B5MCH6 92 aa7.21□□□□□ -1.26
LIG3-204ENST00000585740 Q6ZRX8 168 aa7.21□□□□□ -1.26
LIG3-204ENST00000585740 SMCR5Q8TEV8 140 aa7.21□□□□□ -1.26
LIG3-204ENST00000585740 A0A096LNI7 61 aa7.2□□□□□ -1.26
LIG3-204ENST00000585740 KRTAP4-16G5E9R7 235 aaPredicted RBP7.2□□□□□ -1.26
LIG3-204ENST00000585740 Q6JHZ5 121 aa7.2□□□□□ -1.26
LIG3-204ENST00000585740 Q6ZQT0 140 aa7.2□□□□□ -1.26
LIG3-204ENST00000585740 Q6ZRN7 208 aaPredicted RBP7.2□□□□□ -1.26
LIG3-204ENST00000585740 C9orf163Q8N9P6 203 aa7.2□□□□□ -1.26
LIG3-204ENST00000585740 LINC00474Q9P2X8 69 aa7.2□□□□□ -1.26
LIG3-204ENST00000585740 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.19□□□□□ -1.26
LIG3-204ENST00000585740 A0A1B0GV72 72 aa7.19□□□□□ -1.26
LIG3-204ENST00000585740 RPL37AP8A6NKH3 93 aa7.19□□□□□ -1.26
LIG3-204ENST00000585740 NDUFV3P56181 108 aaKnown RBP7.19□□□□□ -1.26
LIG3-204ENST00000585740 REG3GQ6UW15 175 aa7.19□□□□□ -1.26
LIG3-204ENST00000585740 KRTAP7-1Q8IUC3 87 aa7.19□□□□□ -1.26
LIG3-204ENST00000585740 LINC00846Q9NV44 126 aa7.18□□□□□ -1.26
LIG3-204ENST00000585740 IGKV2-24A0A0C4DH68 120 aa7.17□□□□□ -1.26
LIG3-204ENST00000585740 ATP5EP2Q5VTU8 51 aa7.17□□□□□ -1.26
LIG3-204ENST00000585740 UBL5Q9BZL1 73 aa7.17□□□□□ -1.26
LIG3-204ENST00000585740 TRBV7-4A0A0J9YYF1 115 aa7.16□□□□□ -1.26
LIG3-204ENST00000585740 RYR1P21817 5038 aa7.15□□□□□ -1.26
LIG3-204ENST00000585740 A0A1W2PNN7 141 aa7.15□□□□□ -1.26
LIG3-204ENST00000585740 DNAH10Q8IVF4 4471 aa7.15□□□□□ -1.27
LIG3-204ENST00000585740 UBE2BP63146 152 aa7.14□□□□□ -1.27
LIG3-204ENST00000585740 Q6ZR54 194 aa7.14□□□□□ -1.27
LIG3-204ENST00000585740 Q9BRP9 147 aa7.14□□□□□ -1.27
LIG3-204ENST00000585740 IGLV5-48A0A075B6I7 105 aa7.13□□□□□ -1.27
LIG3-204ENST00000585740 M0R2N4 97 aa7.13□□□□□ -1.27
LIG3-204ENST00000585740 Q8N377 158 aa7.13□□□□□ -1.27
LIG3-204ENST00000585740 ANAPC13Q9BS18 74 aa7.13□□□□□ -1.27
LIG3-204ENST00000585740 DNAH6Q9C0G6 4158 aa7.12□□□□□ -1.27
LIG3-204ENST00000585740 A0A087WTM6 91 aa7.12□□□□□ -1.27
LIG3-204ENST00000585740 LINC01547P58512 204 aaPredicted RBP7.12□□□□□ -1.27
LIG3-204ENST00000585740 A0A1B0GW54 56 aa7.11□□□□□ -1.27
LIG3-204ENST00000585740 FAM19A1Q7Z5A9 133 aa7.11□□□□□ -1.27
LIG3-204ENST00000585740 DEFB105AQ8NG35 78 aa7.11□□□□□ -1.27
LIG3-204ENST00000585740 FRAS1Q86XX4 4008 aa7.11□□□□□ -1.27
LIG3-204ENST00000585740 IGKV3D-7A0A0C4DH55 119 aa7.1□□□□□ -1.27
LIG3-204ENST00000585740 H0Y9J4 135 aa7.1□□□□□ -1.27
LIG3-204ENST00000585740 CHTF8P0CG12 524 aa7.09□□□□□ -1.27
LIG3-204ENST00000585740 C1orf134Q5TEV5 83 aa7.09□□□□□ -1.27
LIG3-204ENST00000585740 PHF5AQ7RTV0 110 aaKnown RBP7.09□□□□□ -1.27
LIG3-204ENST00000585740 FAM236AA0A1B0GUQ0 79 aa7.08□□□□□ -1.28
LIG3-204ENST00000585740 FAM236BA0A1B0GV22 79 aa7.08□□□□□ -1.28
LIG3-204ENST00000585740 EPM2AB3EWF7 344 aa7.08□□□□□ -1.28
LIG3-204ENST00000585740 DNAH17Q9UFH2 4485 aa7.07□□□□□ -1.28
LIG3-204ENST00000585740 Q6ZVQ6 151 aa7.07□□□□□ -1.28
LIG3-204ENST00000585740 SPACA4Q8TDM5 124 aa7.07□□□□□ -1.28
LIG3-204ENST00000585740 KIAA1109Q2LD37 5005 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 ALMS1Q8TCU4 4167 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 F8WEM9 126 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 RTL8CO15255 209 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 ERC2-IT1O76042 136 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 CXCL6P80162 114 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 TNP2Q05952 138 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 ST20-AS1Q8NBB2 130 aa7.06□□□□□ -1.28
LIG3-204ENST00000585740 ATOX1O00244 68 aa7.05□□□□□ -1.28
LIG3-204ENST00000585740 LY6G6CO95867 125 aa7.05□□□□□ -1.28
LIG3-204ENST00000585740 FUSP35637 526 aaKnown RBP eCLIP7.05□□□□□ -1.28
LIG3-204ENST00000585740 HIST1H4AP62805 103 aaKnown RBP7.05□□□□□ -1.28
LIG3-204ENST00000585740 DPH3Q96FX2 82 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms