RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 BOD1L2Q8IYS8 172 aa6.28□□□□□ -1.4
VPS53-207ENST00000570510 COPS9Q8WXC6 57 aa6.28□□□□□ -1.4
VPS53-207ENST00000570510 MIEN1Q9BRT3 115 aa6.28□□□□□ -1.4
VPS53-207ENST00000570510 KCNQ1DNQ9H478 68 aa6.28□□□□□ -1.4
VPS53-207ENST00000570510 A0A0J9YXY3 114 aa6.27□□□□□ -1.41
VPS53-207ENST00000570510 TSPEAR-AS2P59090 65 aa6.27□□□□□ -1.41
VPS53-207ENST00000570510 TMEM126AQ9H061 195 aa6.27□□□□□ -1.41
VPS53-207ENST00000570510 M0R2T5 61 aa6.26□□□□□ -1.41
VPS53-207ENST00000570510 SPRR1AP35321 89 aa6.26□□□□□ -1.41
VPS53-207ENST00000570510 Q6ZVH6 145 aa6.26□□□□□ -1.41
VPS53-207ENST00000570510 DAND5Q8N907 189 aa6.26□□□□□ -1.41
VPS53-207ENST00000570510 PMCHL2Q9BQD1 86 aa6.26□□□□□ -1.41
VPS53-207ENST00000570510 SPANXB1Q9NS25 103 aaPredicted RBP6.26□□□□□ -1.41
VPS53-207ENST00000570510 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.25□□□□□ -1.41
VPS53-207ENST00000570510 IGKV2-28A0A075B6P5 120 aa6.24□□□□□ -1.41
VPS53-207ENST00000570510 IGKV2D-28P01615 120 aa6.24□□□□□ -1.41
VPS53-207ENST00000570510 S100A6P06703 90 aa6.24□□□□□ -1.41
VPS53-207ENST00000570510 S100A2P29034 98 aa6.24□□□□□ -1.41
VPS53-207ENST00000570510 KRTDAPP60985 99 aa6.24□□□□□ -1.41
VPS53-207ENST00000570510 MT1HP80294 61 aa6.24□□□□□ -1.41
VPS53-207ENST00000570510 C3orf22Q8N5N4 141 aa6.24□□□□□ -1.41
VPS53-207ENST00000570510 A0A0U1RRA0 63 aa6.23□□□□□ -1.41
VPS53-207ENST00000570510 C5orf52A6NGY3 159 aa6.23□□□□□ -1.41
VPS53-207ENST00000570510 FAM19A1Q7Z5A9 133 aa6.23□□□□□ -1.41
VPS53-207ENST00000570510 LINC00518Q8N0U6 118 aa6.23□□□□□ -1.41
VPS53-207ENST00000570510 Q8NDZ9 215 aa6.23□□□□□ -1.41
VPS53-207ENST00000570510 ZNF706Q9Y5V0 76 aaPredicted RBP6.23□□□□□ -1.41
VPS53-207ENST00000570510 IFITM1P13164 125 aa6.22□□□□□ -1.41
VPS53-207ENST00000570510 PRLHP81277 87 aa6.22□□□□□ -1.41
VPS53-207ENST00000570510 HIST3H2BBQ8N257 126 aa6.22□□□□□ -1.41
VPS53-207ENST00000570510 SPANXCQ9NY87 97 aa6.22□□□□□ -1.41
VPS53-207ENST00000570510 ZNF815PA8K554 130 aa6.21□□□□□ -1.42
VPS53-207ENST00000570510 TMEM238C9JI98 176 aa6.21□□□□□ -1.42
VPS53-207ENST00000570510 KRTAP4-16G5E9R7 235 aaPredicted RBP6.21□□□□□ -1.42
VPS53-207ENST00000570510 IGLV6-57P01721 117 aa6.21□□□□□ -1.42
VPS53-207ENST00000570510 KRTAP10-6P60371 365 aaPredicted RBP6.21□□□□□ -1.42
VPS53-207ENST00000570510 LITAFQ99732 161 aa6.21□□□□□ -1.42
VPS53-207ENST00000570510 HIST1H2BLQ99880 126 aa6.21□□□□□ -1.42
VPS53-207ENST00000570510 TMA7Q9Y2S6 64 aaKnown RBP6.21□□□□□ -1.42
VPS53-207ENST00000570510 DDTP30046 118 aa6.2□□□□□ -1.42
VPS53-207ENST00000570510 JOSD1Q15040 202 aaPredicted RBP6.2□□□□□ -1.42
VPS53-207ENST00000570510 SPANXDQ9BXN6 97 aa6.2□□□□□ -1.42
VPS53-207ENST00000570510 TRBV10-3A0A0K0K1G6 114 aa6.19□□□□□ -1.42
VPS53-207ENST00000570510 ETDCA0A1B0GVM5 59 aa6.19□□□□□ -1.42
VPS53-207ENST00000570510 HSBP1L1C9JCN9 74 aa6.19□□□□□ -1.42
VPS53-207ENST00000570510 HINT1P49773 126 aaPredicted RBP6.19□□□□□ -1.42
VPS53-207ENST00000570510 S100A7L2Q5SY68 101 aa6.19□□□□□ -1.42
VPS53-207ENST00000570510 ADAMTSL4-AS1Q5T5F5 129 aa6.19□□□□□ -1.42
VPS53-207ENST00000570510 LINC00308Q8TCZ7 52 aa6.19□□□□□ -1.42
VPS53-207ENST00000570510 SPINK1P00995 79 aa6.18□□□□□ -1.42
VPS53-207ENST00000570510 SCGB1D4Q6XE38 83 aa6.18□□□□□ -1.42
VPS53-207ENST00000570510 Q8NBF4 154 aa6.18□□□□□ -1.42
VPS53-207ENST00000570510 NCR3O14931 201 aa6.17□□□□□ -1.42
VPS53-207ENST00000570510 HIGD2AQ9BW72 106 aa6.17□□□□□ -1.42
VPS53-207ENST00000570510 IGLV8-61A0A075B6I0 122 aa6.16□□□□□ -1.42
VPS53-207ENST00000570510 SOSTDC1Q6X4U4 206 aa6.16□□□□□ -1.42
VPS53-207ENST00000570510 Q6ZRX8 168 aa6.16□□□□□ -1.42
VPS53-207ENST00000570510 TRAV23DV6A0A075B6W5 121 aa6.15□□□□□ -1.42
VPS53-207ENST00000570510 TRBV7-6A0A0J9YX20 115 aa6.15□□□□□ -1.42
VPS53-207ENST00000570510 B5MCH6 92 aa6.15□□□□□ -1.42
VPS53-207ENST00000570510 ZNF73O43830 326 aaPredicted RBP6.15□□□□□ -1.42
VPS53-207ENST00000570510 XP32Q5T750 250 aa6.15□□□□□ -1.42
VPS53-207ENST00000570510 SPRR4Q96PI1 79 aa6.15□□□□□ -1.42
VPS53-207ENST00000570510 LINC00483Q53H64 154 aa6.14□□□□□ -1.43
VPS53-207ENST00000570510 ANKRD39Q53RE8 183 aa6.14□□□□□ -1.43
VPS53-207ENST00000570510 KRTAP19-2Q3LHN2 52 aa6.13□□□□□ -1.43
VPS53-207ENST00000570510 COX6B2Q6YFQ2 88 aa6.13□□□□□ -1.43
VPS53-207ENST00000570510 DHRS4-AS1Q9P1J3 65 aa6.13□□□□□ -1.43
VPS53-207ENST00000570510 TRAV13-2A0A0B4J235 113 aa6.12□□□□□ -1.43
VPS53-207ENST00000570510 A4D1N5 150 aa6.12□□□□□ -1.43
VPS53-207ENST00000570510 DLEU1O43261 78 aa6.12□□□□□ -1.43
VPS53-207ENST00000570510 PCOTHQ58A44 107 aa6.12□□□□□ -1.43
VPS53-207ENST00000570510 SMCR5Q8TEV8 140 aa6.12□□□□□ -1.43
VPS53-207ENST00000570510 SLC25A20O43772 301 aa6.11□□□□□ -1.43
VPS53-207ENST00000570510 SLC25A34Q6PIV7 304 aa6.11□□□□□ -1.43
VPS53-207ENST00000570510 ATOH7Q8N100 152 aa6.11□□□□□ -1.43
VPS53-207ENST00000570510 SSBP3-AS1Q7Z2R9 100 aa6.1□□□□□ -1.43
VPS53-207ENST00000570510 PCP2Q8IVA1 136 aa6.1□□□□□ -1.43
VPS53-207ENST00000570510 TTTY13Q9BZ97 58 aa6.1□□□□□ -1.43
VPS53-207ENST00000570510 SCGB1D1O95968 90 aa6.09□□□□□ -1.43
VPS53-207ENST00000570510 RPS29P62273 56 aaKnown RBP6.09□□□□□ -1.43
VPS53-207ENST00000570510 OR13C6PQ8NH95 151 aa6.09□□□□□ -1.43
VPS53-207ENST00000570510 A0A1B0GWB2 263 aa6.08□□□□□ -1.44
VPS53-207ENST00000570510 ELOF1P60002 83 aaKnown RBP6.08□□□□□ -1.44
VPS53-207ENST00000570510 NPC2P61916 151 aa6.08□□□□□ -1.44
VPS53-207ENST00000570510 Q8N377 158 aa6.08□□□□□ -1.44
VPS53-207ENST00000570510 Q9BRP9 147 aa6.08□□□□□ -1.44
VPS53-207ENST00000570510 COX8AP10176 69 aa6.07□□□□□ -1.44
VPS53-207ENST00000570510 SPRR1BP22528 89 aa6.07□□□□□ -1.44
VPS53-207ENST00000570510 MUSTN1Q8IVN3 82 aa6.07□□□□□ -1.44
VPS53-207ENST00000570510 NHP2Q9NX24 153 aaKnown RBP6.07□□□□□ -1.44
VPS53-207ENST00000570510 IGLV9-49A0A0B4J1Y8 123 aa6.06□□□□□ -1.44
VPS53-207ENST00000570510 COX7BP24311 80 aa6.06□□□□□ -1.44
VPS53-207ENST00000570510 HIGD1BQ9P298 99 aa6.06□□□□□ -1.44
VPS53-207ENST00000570510 C6orf99Q4VX62 202 aa6.05□□□□□ -1.44
VPS53-207ENST00000570510 A6NDN8 102 aa6.04□□□□□ -1.44
VPS53-207ENST00000570510 MOBPQ13875 183 aa6.04□□□□□ -1.44
VPS53-207ENST00000570510 VAMP3Q15836 100 aa6.04□□□□□ -1.44
VPS53-207ENST00000570510 GAGE2AQ6NT46 116 aa6.04□□□□□ -1.44
VPS53-207ENST00000570510 ERC2-IT1O76042 136 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms