RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 SMCPP49901 116 aaPredicted RBP12.07□□□□□ -0.48
CLN3-233ENST00000568452 COX7BP24311 80 aa12.06□□□□□ -0.48
CLN3-233ENST00000568452 ANKRD29Q8N6D5 301 aa12.06□□□□□ -0.48
CLN3-233ENST00000568452 LINC01600Q96MT4 127 aa12.06□□□□□ -0.48
CLN3-233ENST00000568452 LINC00575Q6W349 94 aa12.05□□□□□ -0.48
CLN3-233ENST00000568452 RPL37AP8A6NKH3 93 aa12.04□□□□□ -0.48
CLN3-233ENST00000568452 ELOF1P60002 83 aaKnown RBP12.04□□□□□ -0.48
CLN3-233ENST00000568452 HYDINQ4G0P3 5121 aa12.04□□□□□ -0.48
CLN3-233ENST00000568452 SPACA4Q8TDM5 124 aa12.04□□□□□ -0.48
CLN3-233ENST00000568452 DPH3Q96FX2 82 aa12.04□□□□□ -0.48
CLN3-233ENST00000568452 hADV29S1A0JD25 119 aa12.01□□□□□ -0.49
CLN3-233ENST00000568452 FUSP35637 526 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLN3-233ENST00000568452 K7ERU9 68 aa12□□□□□ -0.49
CLN3-233ENST00000568452 SPRR1AP35321 89 aa12□□□□□ -0.49
CLN3-233ENST00000568452 ETDBQ3ZM63 59 aa12□□□□□ -0.49
CLN3-233ENST00000568452 BAALC-AS2P0C853 105 aa12□□□□□ -0.49
CLN3-233ENST00000568452 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12□□□□□ -0.49
CLN3-233ENST00000568452 ETDCA0A1B0GVM5 59 aa11.99□□□□□ -0.49
CLN3-233ENST00000568452 PANO1I0J062 215 aa11.99□□□□□ -0.49
CLN3-233ENST00000568452 TEN1Q86WV5 123 aa11.99□□□□□ -0.49
CLN3-233ENST00000568452 LINC00528Q8N1L1 170 aa11.99□□□□□ -0.49
CLN3-233ENST00000568452 KMT2CQ8NEZ4 4911 aaKnown RBP11.98□□□□□ -0.49
CLN3-233ENST00000568452 EPM2AB3EWF7 344 aa11.98□□□□□ -0.49
CLN3-233ENST00000568452 OCIAD2Q56VL3 154 aa11.98□□□□□ -0.49
CLN3-233ENST00000568452 REG3GQ6UW15 175 aa11.98□□□□□ -0.49
CLN3-233ENST00000568452 ORMDL1Q9P0S3 153 aa11.98□□□□□ -0.49
CLN3-233ENST00000568452 INAFM2P0DMQ5 153 aa11.97□□□□□ -0.49
CLN3-233ENST00000568452 PHF5AQ7RTV0 110 aaKnown RBP11.97□□□□□ -0.49
CLN3-233ENST00000568452 UBE2BP63146 152 aa11.97□□□□□ -0.49
CLN3-233ENST00000568452 KRTAP4-16G5E9R7 235 aaPredicted RBP11.96□□□□□ -0.5
CLN3-233ENST00000568452 KRTAP10-2P60368 255 aa11.96□□□□□ -0.5
CLN3-233ENST00000568452 LINC00336Q6ZUF6 198 aa11.96□□□□□ -0.5
CLN3-233ENST00000568452 RYR2Q92736 4967 aa11.95□□□□□ -0.5
CLN3-233ENST00000568452 B5MCH6 92 aa11.94□□□□□ -0.5
CLN3-233ENST00000568452 Q6ZRX8 168 aa11.94□□□□□ -0.5
CLN3-233ENST00000568452 H3BQ85 93 aa11.93□□□□□ -0.5
CLN3-233ENST00000568452 GHRHP01286 108 aa11.93□□□□□ -0.5
CLN3-233ENST00000568452 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.93□□□□□ -0.5
CLN3-233ENST00000568452 DHRS4-AS1Q9P1J3 65 aa11.93□□□□□ -0.5
CLN3-233ENST00000568452 FRAS1Q86XX4 4008 aa11.93□□□□□ -0.5
CLN3-233ENST00000568452 PLAC8Q9NZF1 115 aa11.93□□□□□ -0.5
CLN3-233ENST00000568452 PPDPFLQ8WWR9 84 aa11.92□□□□□ -0.5
CLN3-233ENST00000568452 TMEM256-PLSCR3K7ERE1 68 aa11.91□□□□□ -0.5
CLN3-233ENST00000568452 PCP4P48539 62 aa11.9□□□□□ -0.5
CLN3-233ENST00000568452 Q6ZQY7 126 aa11.9□□□□□ -0.5
CLN3-233ENST00000568452 J3QR89 54 aa11.89□□□□□ -0.51
CLN3-233ENST00000568452 HECTD4Q9Y4D8 3996 aa11.87□□□□□ -0.51
CLN3-233ENST00000568452 FAM19A1Q7Z5A9 133 aa11.87□□□□□ -0.51
CLN3-233ENST00000568452 DNAH11Q96DT5 4516 aa11.87□□□□□ -0.51
CLN3-233ENST00000568452 VPS25Q9BRG1 176 aa11.86□□□□□ -0.51
CLN3-233ENST00000568452 FAT2Q9NYQ8 4349 aa11.86□□□□□ -0.51
CLN3-233ENST00000568452 Q9BRP9 147 aa11.86□□□□□ -0.51
CLN3-233ENST00000568452 TEX49A0A1B0GTD5 131 aa11.85□□□□□ -0.51
CLN3-233ENST00000568452 KRTAP11-1Q8IUC1 163 aa11.85□□□□□ -0.51
CLN3-233ENST00000568452 H0Y9J4 135 aa11.83□□□□□ -0.52
CLN3-233ENST00000568452 BCE1O60756 84 aa11.82□□□□□ -0.52
CLN3-233ENST00000568452 KRTAP10-1P60331 282 aa11.82□□□□□ -0.52
CLN3-233ENST00000568452 Q6ZSA8 131 aa11.82□□□□□ -0.52
CLN3-233ENST00000568452 JMJD7-PLA2G4BH0Y9G9 81 aa11.8□□□□□ -0.52
CLN3-233ENST00000568452 PRLHP81277 87 aa11.8□□□□□ -0.52
CLN3-233ENST00000568452 UBE2AP49459 152 aa11.79□□□□□ -0.52
CLN3-233ENST00000568452 SMCR5Q8TEV8 140 aa11.79□□□□□ -0.52
CLN3-233ENST00000568452 OBSCN-AS1Q96MR7 158 aa11.79□□□□□ -0.52
CLN3-233ENST00000568452 FAM30AQ9NZY2 134 aa11.79□□□□□ -0.52
CLN3-233ENST00000568452 RYR3Q15413 4870 aa11.78□□□□□ -0.52
CLN3-233ENST00000568452 LAMTOR3Q9UHA4 124 aa11.78□□□□□ -0.52
CLN3-233ENST00000568452 DNAH5Q8TE73 4624 aa11.77□□□□□ -0.52
CLN3-233ENST00000568452 CIRBP-AS1Q8TBR5 109 aa11.77□□□□□ -0.53
CLN3-233ENST00000568452 HIGD2AQ9BW72 106 aa11.77□□□□□ -0.53
CLN3-233ENST00000568452 ERC2-IT1O76042 136 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 DNAH8Q96JB1 4490 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 IGLV5-48A0A075B6I7 105 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 A0A1B0GVY2 172 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 SCXQ7RTU7 201 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 DEFB105AQ8NG35 78 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 PSORS1C2Q9UIG4 136 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 PKD1P98161 4303 aa11.75□□□□□ -0.53
CLN3-233ENST00000568452 NDUFV3P56181 108 aaKnown RBP11.73□□□□□ -0.53
CLN3-233ENST00000568452 LINC01547P58512 204 aaPredicted RBP11.73□□□□□ -0.53
CLN3-233ENST00000568452 Q8N377 158 aa11.73□□□□□ -0.53
CLN3-233ENST00000568452 KRTAP13-1Q8IUC0 172 aa11.72□□□□□ -0.53
CLN3-233ENST00000568452 ST20-AS1Q8NBB2 130 aa11.72□□□□□ -0.53
CLN3-233ENST00000568452 RBM3P98179 157 aaKnown RBP11.71□□□□□ -0.53
CLN3-233ENST00000568452 C14orf132Q9NPU4 83 aa11.71□□□□□ -0.53
CLN3-233ENST00000568452 C1orf137Q5JT78 98 aa11.7□□□□□ -0.54
CLN3-233ENST00000568452 A0A1B0GV72 72 aa11.69□□□□□ -0.54
CLN3-233ENST00000568452 C21orf62-AS1Q17RA5 79 aa11.69□□□□□ -0.54
CLN3-233ENST00000568452 FAM240AA0A1B0GVK7 77 aa11.67□□□□□ -0.54
CLN3-233ENST00000568452 PDE6GP18545 87 aa11.67□□□□□ -0.54
CLN3-233ENST00000568452 DSCR8Q96T75 97 aa11.67□□□□□ -0.54
CLN3-233ENST00000568452 ACYP1P07311 99 aa11.66□□□□□ -0.54
CLN3-233ENST00000568452 SCGB1A1P11684 91 aa11.65□□□□□ -0.54
CLN3-233ENST00000568452 LOC110117498A0A087WWA1 95 aa11.64□□□□□ -0.55
CLN3-233ENST00000568452 ZNF861PO60384 105 aa11.64□□□□□ -0.55
CLN3-233ENST00000568452 CCKP06307 115 aa11.64□□□□□ -0.55
CLN3-233ENST00000568452 GAGE2AQ6NT46 116 aa11.64□□□□□ -0.55
CLN3-233ENST00000568452 IGLV7-43P04211 117 aa11.63□□□□□ -0.55
CLN3-233ENST00000568452 SPRR1BP22528 89 aa11.63□□□□□ -0.55
CLN3-233ENST00000568452 TRBV7-4A0A0J9YYF1 115 aa11.61□□□□□ -0.55
CLN3-233ENST00000568452 HAMPP81172 84 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms