RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 NDUFA12Q9UI09 145 aa3.66□□□□□ -1.82
LRRC28-220ENST00000561253 SMR3BP02814 79 aaPredicted RBP3.65□□□□□ -1.83
LRRC28-220ENST00000561253 S100A2P29034 98 aa3.65□□□□□ -1.83
LRRC28-220ENST00000561253 RPL18AQ02543 176 aaKnown RBP3.65□□□□□ -1.83
LRRC28-220ENST00000561253 SFTA2Q6UW10 78 aa3.65□□□□□ -1.83
LRRC28-220ENST00000561253 TTTY13Q9BZ97 58 aa3.65□□□□□ -1.83
LRRC28-220ENST00000561253 ERG28Q9UKR5 140 aa3.65□□□□□ -1.83
LRRC28-220ENST00000561253 PKIGQ9Y2B9 76 aa3.65□□□□□ -1.83
LRRC28-220ENST00000561253 LOC107984156A0A0G2JMH3 177 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 A0A1B0GWB2 263 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 NMUP48645 174 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 COX17Q14061 63 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 KRTAP5-11Q6L8G4 156 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 ARL17AQ8IVW1 177 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 ATOH7Q8N100 152 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 SND1-IT1Q9HBX3 110 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 XAGE1AQ9HD64 81 aa3.64□□□□□ -1.83
LRRC28-220ENST00000561253 A0A0J9YXY3 114 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 MYMXA0A1B0GTQ4 84 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 C20orf202A1L168 122 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 SMIM13P0DJ93 91 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 PFN2P35080 140 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 HNRNPA3P51991 378 aaKnown RBP3.63□□□□□ -1.83
LRRC28-220ENST00000561253 HERVK_113P61574 105 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 Q5VSD8 79 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 TP73-AS1Q9UF72 201 aa3.63□□□□□ -1.83
LRRC28-220ENST00000561253 AKR1D1P51857 326 aa3.62□□□□□ -1.83
LRRC28-220ENST00000561253 JOSD1Q15040 202 aaPredicted RBP3.62□□□□□ -1.83
LRRC28-220ENST00000561253 PYY3Q5JQD4 70 aa3.62□□□□□ -1.83
LRRC28-220ENST00000561253 SOSTDC1Q6X4U4 206 aa3.62□□□□□ -1.83
LRRC28-220ENST00000561253 PHF5AQ7RTV0 110 aaKnown RBP3.62□□□□□ -1.83
LRRC28-220ENST00000561253 PCP2Q8IVA1 136 aa3.62□□□□□ -1.83
LRRC28-220ENST00000561253 MIR7-3HGQ8N6C7 128 aa3.62□□□□□ -1.83
LRRC28-220ENST00000561253 M0QXV9 152 aa3.61□□□□□ -1.83
LRRC28-220ENST00000561253 TIMM17BO60830 172 aa3.61□□□□□ -1.83
LRRC28-220ENST00000561253 LGALS3P17931 250 aaKnown RBP3.61□□□□□ -1.83
LRRC28-220ENST00000561253 PRR3P79522 188 aaKnown RBP3.61□□□□□ -1.83
LRRC28-220ENST00000561253 FAM19A5Q7Z5A7 132 aaPredicted RBP3.61□□□□□ -1.83
LRRC28-220ENST00000561253 DAND5Q8N907 189 aa3.61□□□□□ -1.83
LRRC28-220ENST00000561253 C22orf24Q9Y442 160 aa3.61□□□□□ -1.83
LRRC28-220ENST00000561253 ZNF815PA8K554 130 aa3.6□□□□□ -1.83
LRRC28-220ENST00000561253 LINC00587B1AMM8 73 aa3.6□□□□□ -1.83
LRRC28-220ENST00000561253 LINC00158P58513 81 aa3.6□□□□□ -1.83
LRRC28-220ENST00000561253 C7orf33Q8WU49 177 aa3.6□□□□□ -1.83
LRRC28-220ENST00000561253 PSORS1C2Q9UIG4 136 aa3.6□□□□□ -1.83
LRRC28-220ENST00000561253 RPL37AP61513 92 aaKnown RBP3.59□□□□□ -1.83
LRRC28-220ENST00000561253 MEIG1Q5JSS6 88 aa3.59□□□□□ -1.83
LRRC28-220ENST00000561253 MRPL55Q7Z7F7 128 aaKnown RBP3.59□□□□□ -1.83
LRRC28-220ENST00000561253 KRTAP13-1Q8IUC0 172 aa3.59□□□□□ -1.83
LRRC28-220ENST00000561253 BOD1L2Q8IYS8 172 aa3.59□□□□□ -1.83
LRRC28-220ENST00000561253 DPH3Q96FX2 82 aa3.59□□□□□ -1.83
LRRC28-220ENST00000561253 LINC00167Q96N53 147 aa3.59□□□□□ -1.83
LRRC28-220ENST00000561253 HMCN2Q8NDA2 5059 aa3.59□□□□□ -1.84
LRRC28-220ENST00000561253 IGLV1-50A0A075B6I6 118 aa3.58□□□□□ -1.84
LRRC28-220ENST00000561253 IGKV2-28A0A075B6P5 120 aa3.58□□□□□ -1.84
LRRC28-220ENST00000561253 DLEU1O43261 78 aa3.58□□□□□ -1.84
LRRC28-220ENST00000561253 IGKV2D-28P01615 120 aa3.58□□□□□ -1.84
LRRC28-220ENST00000561253 LINC00308Q8TCZ7 52 aa3.58□□□□□ -1.84
LRRC28-220ENST00000561253 SPANXDQ9BXN6 97 aa3.58□□□□□ -1.84
LRRC28-220ENST00000561253 SPANXCQ9NY87 97 aa3.58□□□□□ -1.84
LRRC28-220ENST00000561253 KRTAP4-16G5E9R7 235 aaPredicted RBP3.57□□□□□ -1.84
LRRC28-220ENST00000561253 H0Y9J4 135 aa3.57□□□□□ -1.84
LRRC28-220ENST00000561253 NDUFC2O95298 119 aa3.57□□□□□ -1.84
LRRC28-220ENST00000561253 COX8AP10176 69 aa3.57□□□□□ -1.84
LRRC28-220ENST00000561253 ANAPC11Q9NYG5 84 aa3.57□□□□□ -1.84
LRRC28-220ENST00000561253 TRBV10-2A0A0K0K1G8 114 aa3.56□□□□□ -1.84
LRRC28-220ENST00000561253 LOC105371267A0A1B0GV96 52 aa3.56□□□□□ -1.84
LRRC28-220ENST00000561253 M0R378 163 aa3.56□□□□□ -1.84
LRRC28-220ENST00000561253 IGLV6-57P01721 117 aa3.56□□□□□ -1.84
LRRC28-220ENST00000561253 SPRR1AP35321 89 aa3.56□□□□□ -1.84
LRRC28-220ENST00000561253 C2orf91Q6ZV80 131 aa3.56□□□□□ -1.84
LRRC28-220ENST00000561253 SPANXB1Q9NS25 103 aaPredicted RBP3.56□□□□□ -1.84
LRRC28-220ENST00000561253 HSBP1L1C9JCN9 74 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 TMEM238C9JI98 176 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 IGLV7-43P04211 117 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 INAFM2P0DMQ5 153 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 IFITM1P13164 125 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 SPATA45Q537H7 98 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 Q6ZVH6 145 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 NKAPP1Q8N9T2 125 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 C14orf144Q96I85 54 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 VAMP8Q9BV40 100 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 KCNQ1DNQ9H478 68 aa3.55□□□□□ -1.84
LRRC28-220ENST00000561253 TRBV10-3A0A0K0K1G6 114 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 NCR3O14931 201 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 BCE1O60756 84 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 MT1HL1P0DM35 61 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 NPC2P61916 151 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 UBE2BP63146 152 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 C1orf137Q5JT78 98 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 SCGB1D4Q6XE38 83 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 LINC00337Q8N6G1 96 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 TMEM126AQ9H061 195 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 HIGD1BQ9P298 99 aa3.54□□□□□ -1.84
LRRC28-220ENST00000561253 ZNF861PO60384 105 aa3.53□□□□□ -1.84
LRRC28-220ENST00000561253 RPL13AP40429 203 aaKnown RBP3.53□□□□□ -1.84
LRRC28-220ENST00000561253 SPINK6Q6UWN8 80 aa3.53□□□□□ -1.84
LRRC28-220ENST00000561253 MUSTN1Q8IVN3 82 aa3.53□□□□□ -1.84
LRRC28-220ENST00000561253 HIST1H4GQ99525 98 aa3.53□□□□□ -1.84
LRRC28-220ENST00000561253 SMIM6P0DI80 62 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms