RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 C3orf22Q8N5N4 141 aa6.78□□□□□ -1.32
CCDC88C-208ENST00000554165 LINC00337Q8N6G1 96 aa6.78□□□□□ -1.32
CCDC88C-208ENST00000554165 LINC00308Q8TCZ7 52 aa6.78□□□□□ -1.32
CCDC88C-208ENST00000554165 SMCR5Q8TEV8 140 aa6.78□□□□□ -1.32
CCDC88C-208ENST00000554165 HIST1H2BLQ99880 126 aa6.78□□□□□ -1.32
CCDC88C-208ENST00000554165 C20orf202A1L168 122 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 B5MCH6 92 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 TIMM17BO60830 172 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 ERC2-IT1O76042 136 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 NDUFC2O95298 119 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 IGLV6-57P01721 117 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 FAM229BQ4G0N7 80 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 SPRR4Q96PI1 79 aa6.77□□□□□ -1.33
CCDC88C-208ENST00000554165 S100A7L2Q5SY68 101 aa6.76□□□□□ -1.33
CCDC88C-208ENST00000554165 PCP2Q8IVA1 136 aa6.76□□□□□ -1.33
CCDC88C-208ENST00000554165 PPDPFQ9H3Y8 114 aa6.76□□□□□ -1.33
CCDC88C-208ENST00000554165 LPAP08519 4548 aa6.75□□□□□ -1.33
CCDC88C-208ENST00000554165 Q9BRP9 147 aa6.75□□□□□ -1.33
CCDC88C-208ENST00000554165 S100A2P29034 98 aa6.74□□□□□ -1.33
CCDC88C-208ENST00000554165 TRAV23DV6A0A075B6W5 121 aa6.73□□□□□ -1.33
CCDC88C-208ENST00000554165 SNRPEP62304 92 aaKnown RBP6.73□□□□□ -1.33
CCDC88C-208ENST00000554165 PRR4Q16378 134 aa6.73□□□□□ -1.33
CCDC88C-208ENST00000554165 SCGB1D4Q6XE38 83 aa6.73□□□□□ -1.33
CCDC88C-208ENST00000554165 SPANXCQ9NY87 97 aa6.73□□□□□ -1.33
CCDC88C-208ENST00000554165 ZNF73O43830 326 aaPredicted RBP6.72□□□□□ -1.33
CCDC88C-208ENST00000554165 S100A6P06703 90 aa6.72□□□□□ -1.33
CCDC88C-208ENST00000554165 Q6ZRX8 168 aa6.72□□□□□ -1.33
CCDC88C-208ENST00000554165 LINC00304Q8N9R0 145 aa6.72□□□□□ -1.33
CCDC88C-208ENST00000554165 OR13C6PQ8NH95 151 aa6.72□□□□□ -1.33
CCDC88C-208ENST00000554165 S100A12P80511 92 aa6.71□□□□□ -1.34
CCDC88C-208ENST00000554165 GAGE2AQ6NT46 116 aa6.71□□□□□ -1.34
CCDC88C-208ENST00000554165 RETNLBQ9BQ08 111 aa6.71□□□□□ -1.34
CCDC88C-208ENST00000554165 SPANXDQ9BXN6 97 aa6.71□□□□□ -1.34
CCDC88C-208ENST00000554165 ZNF706Q9Y5V0 76 aaPredicted RBP6.7□□□□□ -1.34
CCDC88C-208ENST00000554165 MUSTN1Q8IVN3 82 aa6.69□□□□□ -1.34
CCDC88C-208ENST00000554165 ST20-AS1Q8NBB2 130 aa6.69□□□□□ -1.34
CCDC88C-208ENST00000554165 C5orf52A6NGY3 159 aa6.68□□□□□ -1.34
CCDC88C-208ENST00000554165 LINC00483Q53H64 154 aa6.68□□□□□ -1.34
CCDC88C-208ENST00000554165 Q8NBF4 154 aa6.67□□□□□ -1.34
CCDC88C-208ENST00000554165 IGLV9-49A0A0B4J1Y8 123 aa6.66□□□□□ -1.34
CCDC88C-208ENST00000554165 SCGB1D1O95968 90 aa6.66□□□□□ -1.34
CCDC88C-208ENST00000554165 AKR1D1P51857 326 aa6.66□□□□□ -1.34
CCDC88C-208ENST00000554165 IFITM1P13164 125 aa6.65□□□□□ -1.34
CCDC88C-208ENST00000554165 MOBPQ13875 183 aa6.65□□□□□ -1.34
CCDC88C-208ENST00000554165 C6orf99Q4VX62 202 aa6.65□□□□□ -1.34
CCDC88C-208ENST00000554165 LINC00518Q8N0U6 118 aa6.65□□□□□ -1.34
CCDC88C-208ENST00000554165 JOSD1Q15040 202 aaPredicted RBP6.64□□□□□ -1.35
CCDC88C-208ENST00000554165 A6NDN8 102 aa6.63□□□□□ -1.35
CCDC88C-208ENST00000554165 HSBP1L1C9JCN9 74 aa6.63□□□□□ -1.35
CCDC88C-208ENST00000554165 COX7BP24311 80 aa6.63□□□□□ -1.35
CCDC88C-208ENST00000554165 HINT1P49773 126 aaPredicted RBP6.62□□□□□ -1.35
CCDC88C-208ENST00000554165 Q6ZVH6 145 aa6.62□□□□□ -1.35
CCDC88C-208ENST00000554165 ELOF1P60002 83 aaKnown RBP6.61□□□□□ -1.35
CCDC88C-208ENST00000554165 CBY1Q9Y3M2 126 aa6.61□□□□□ -1.35
CCDC88C-208ENST00000554165 COPS9Q8WXC6 57 aa6.6□□□□□ -1.35
CCDC88C-208ENST00000554165 DHRS4-AS1Q9P1J3 65 aa6.6□□□□□ -1.35
CCDC88C-208ENST00000554165 A4D1N5 150 aa6.59□□□□□ -1.35
CCDC88C-208ENST00000554165 C21orf62-AS1Q17RA5 79 aa6.59□□□□□ -1.35
CCDC88C-208ENST00000554165 SPAG11AQ6PDA7 123 aa6.59□□□□□ -1.35
CCDC88C-208ENST00000554165 SMIM11BQ8TCY0 68 aa6.59□□□□□ -1.35
CCDC88C-208ENST00000554165 IGLV7-46A0A075B6I9 117 aa6.58□□□□□ -1.36
CCDC88C-208ENST00000554165 COX8AP10176 69 aa6.58□□□□□ -1.36
CCDC88C-208ENST00000554165 C9orf153Q5TBE3 101 aa6.58□□□□□ -1.36
CCDC88C-208ENST00000554165 SSBP3-AS1Q7Z2R9 100 aa6.58□□□□□ -1.36
CCDC88C-208ENST00000554165 DEFB105AQ8NG35 78 aa6.58□□□□□ -1.36
CCDC88C-208ENST00000554165 C14orf144Q96I85 54 aa6.58□□□□□ -1.36
CCDC88C-208ENST00000554165 TRAV13-2A0A0B4J235 113 aa6.57□□□□□ -1.36
CCDC88C-208ENST00000554165 GHRHP01286 108 aa6.57□□□□□ -1.36
CCDC88C-208ENST00000554165 SPRR1BP22528 89 aa6.57□□□□□ -1.36
CCDC88C-208ENST00000554165 C12orf57Q99622 126 aa6.57□□□□□ -1.36
CCDC88C-208ENST00000554165 PAM16Q9Y3D7 125 aa6.57□□□□□ -1.36
CCDC88C-208ENST00000554165 TRBV7-6A0A0J9YX20 115 aa6.56□□□□□ -1.36
CCDC88C-208ENST00000554165 MUC2Q02817 5179 aa6.56□□□□□ -1.36
CCDC88C-208ENST00000554165 A0A1B0GWB2 263 aa6.55□□□□□ -1.36
CCDC88C-208ENST00000554165 SPINK1P00995 79 aa6.55□□□□□ -1.36
CCDC88C-208ENST00000554165 CTAG1AP78358 180 aa6.55□□□□□ -1.36
CCDC88C-208ENST00000554165 TAL2Q16559 108 aa6.55□□□□□ -1.36
CCDC88C-208ENST00000554165 Q1RN00 199 aa6.55□□□□□ -1.36
CCDC88C-208ENST00000554165 HIST1H4GQ99525 98 aa6.55□□□□□ -1.36
CCDC88C-208ENST00000554165 LINC01547P58512 204 aaPredicted RBP6.54□□□□□ -1.36
CCDC88C-208ENST00000554165 SPATA45Q537H7 98 aa6.54□□□□□ -1.36
CCDC88C-208ENST00000554165 A0A0G2JQZ4 141 aa6.53□□□□□ -1.36
CCDC88C-208ENST00000554165 DLEU1O43261 78 aa6.53□□□□□ -1.36
CCDC88C-208ENST00000554165 XP32Q5T750 250 aa6.53□□□□□ -1.36
CCDC88C-208ENST00000554165 HRCT1Q6UXD1 115 aa6.53□□□□□ -1.36
CCDC88C-208ENST00000554165 SMIM29Q86T20 159 aa6.53□□□□□ -1.36
CCDC88C-208ENST00000554165 Q8N377 158 aa6.53□□□□□ -1.36
CCDC88C-208ENST00000554165 C2orf91Q6ZV80 131 aa6.52□□□□□ -1.37
CCDC88C-208ENST00000554165 VAMP8Q9BV40 100 aa6.52□□□□□ -1.37
CCDC88C-208ENST00000554165 TEX49A0A1B0GTD5 131 aa6.51□□□□□ -1.37
CCDC88C-208ENST00000554165 TPRXLQ17RH7 258 aa6.51□□□□□ -1.37
CCDC88C-208ENST00000554165 LAMTOR3Q9UHA4 124 aa6.51□□□□□ -1.37
CCDC88C-208ENST00000554165 IGLV5-48A0A075B6I7 105 aa6.5□□□□□ -1.37
CCDC88C-208ENST00000554165 LINC00575Q6W349 94 aa6.5□□□□□ -1.37
CCDC88C-208ENST00000554165 CDIP1Q9H305 208 aa6.5□□□□□ -1.37
CCDC88C-208ENST00000554165 H7C2G1 150 aa6.49□□□□□ -1.37
CCDC88C-208ENST00000554165 CFC1BP0CG36 223 aa6.49□□□□□ -1.37
CCDC88C-208ENST00000554165 CFC1P0CG37 223 aa6.49□□□□□ -1.37
CCDC88C-208ENST00000554165 KRTAP13-3Q3SY46 172 aa6.49□□□□□ -1.37
CCDC88C-208ENST00000554165 PYY3Q5JQD4 70 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms