RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 hADV29S1A0JD25 119 aa3.91□□□□□ -1.78
VIPAS39-204ENST00000553576 USP17L23D6RBM5 183 aa3.91□□□□□ -1.78
VIPAS39-204ENST00000553576 JMJD7-PLA2G4BH0Y9G9 81 aa3.91□□□□□ -1.78
VIPAS39-204ENST00000553576 XGP55808 180 aa3.91□□□□□ -1.78
VIPAS39-204ENST00000553576 RPL18AQ02543 176 aaKnown RBP3.91□□□□□ -1.78
VIPAS39-204ENST00000553576 Q6Q795 121 aa3.91□□□□□ -1.78
VIPAS39-204ENST00000553576 XAGE1AQ9HD64 81 aa3.91□□□□□ -1.78
VIPAS39-204ENST00000553576 TRAV23DV6A0A075B6W5 121 aa3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 KRTAP23-1A1A580 65 aa3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 ZNF73O43830 326 aaPredicted RBP3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 MT-ATP8P03928 68 aa3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 ELOF1P60002 83 aaKnown RBP3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 C9orf129Q5T035 196 aaKnown RBP3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 DIRC1Q969H9 104 aa3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 KCNQ1DNQ9H478 68 aa3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 DNAH7Q8WXX0 4024 aa3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 COL7A1Q02388 2944 aa3.9□□□□□ -1.79
VIPAS39-204ENST00000553576 NUPR2A6NF83 97 aa3.89□□□□□ -1.79
VIPAS39-204ENST00000553576 GAGE2EQ4V326 116 aa3.89□□□□□ -1.79
VIPAS39-204ENST00000553576 CASC10Q5T4H9 136 aa3.89□□□□□ -1.79
VIPAS39-204ENST00000553576 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.89□□□□□ -1.79
VIPAS39-204ENST00000553576 IMUPQ9GZP8 106 aa3.89□□□□□ -1.79
VIPAS39-204ENST00000553576 GAGE2DQ9UEU5 116 aa3.89□□□□□ -1.79
VIPAS39-204ENST00000553576 LOC107984640A0A0U1RRK4 108 aa3.88□□□□□ -1.79
VIPAS39-204ENST00000553576 COX7BP24311 80 aa3.88□□□□□ -1.79
VIPAS39-204ENST00000553576 CNBPP62633 177 aaKnown RBP3.88□□□□□ -1.79
VIPAS39-204ENST00000553576 LINC00643Q86TS7 51 aa3.88□□□□□ -1.79
VIPAS39-204ENST00000553576 VPS13DQ5THJ4 4388 aa3.88□□□□□ -1.79
VIPAS39-204ENST00000553576 MGAM2Q2M2H8 2515 aa3.88□□□□□ -1.79
VIPAS39-204ENST00000553576 PLECQ15149 4684 aaKnown RBP3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 TRBV7-7A0A0K0K1E9 115 aa3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 CCKP06307 115 aa3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 PDE6GP18545 87 aa3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 SPRR1AP35321 89 aa3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 GAGE2BQ13066 116 aa3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 C14orf177Q52M58 125 aa3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 KRTAP1-5Q9BYS1 174 aa3.87□□□□□ -1.79
VIPAS39-204ENST00000553576 IGLV1-50A0A075B6I6 118 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 LOC110117498A0A087WWA1 95 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 KRTAP4-16G5E9R7 235 aaPredicted RBP3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 PRYO14603 147 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 KRTAP21-3Q3LHN1 58 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 TTC32Q5I0X7 151 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 SERTAD4-AS1Q5TG53 156 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 UBE2DNLQ8IWF7 75 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 NKAPP1Q8N9T2 125 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 C7orf33Q8WU49 177 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 C14orf132Q9NPU4 83 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 DNAH10Q8IVF4 4471 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 CSMD3Q7Z407 3707 aa3.86□□□□□ -1.79
VIPAS39-204ENST00000553576 C16orf90A8MZG2 172 aa3.85□□□□□ -1.79
VIPAS39-204ENST00000553576 RBM3P98179 157 aaKnown RBP3.85□□□□□ -1.79
VIPAS39-204ENST00000553576 GAGE2AQ6NT46 116 aa3.85□□□□□ -1.79
VIPAS39-204ENST00000553576 Q6ZQY7 126 aa3.85□□□□□ -1.79
VIPAS39-204ENST00000553576 KRTAP7-1Q8IUC3 87 aa3.85□□□□□ -1.79
VIPAS39-204ENST00000553576 LYSTQ99698 3801 aa3.85□□□□□ -1.79
VIPAS39-204ENST00000553576 PRKDCP78527 4128 aaKnown RBP3.85□□□□□ -1.79
VIPAS39-204ENST00000553576 NBDYA0A0U1RRE5 68 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 LRCOL1A6NCL2 159 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 B5MCH6 92 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 Q6ZQT0 140 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 SMCR5Q8TEV8 140 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 DHRS4-AS1Q9P1J3 65 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 PKIGQ9Y2B9 76 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 DNAH6Q9C0G6 4158 aa3.84□□□□□ -1.79
VIPAS39-204ENST00000553576 PSCAO43653 123 aa3.83□□□□□ -1.8
VIPAS39-204ENST00000553576 Q6ZRN7 208 aaPredicted RBP3.83□□□□□ -1.8
VIPAS39-204ENST00000553576 MRPL55Q7Z7F7 128 aaKnown RBP3.83□□□□□ -1.8
VIPAS39-204ENST00000553576 C9orf163Q8N9P6 203 aa3.83□□□□□ -1.8
VIPAS39-204ENST00000553576 LINC00846Q9NV44 126 aa3.83□□□□□ -1.8
VIPAS39-204ENST00000553576 FAM30AQ9NZY2 134 aa3.83□□□□□ -1.8
VIPAS39-204ENST00000553576 TRBV7-4A0A0J9YYF1 115 aa3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 FAM168BA1KXE4 195 aa3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 EPM2AB3EWF7 344 aa3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 NDUFV3P56181 108 aaKnown RBP3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 Q6JHZ5 121 aa3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 Q6ZRX8 168 aa3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 DSCR8Q96T75 97 aa3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 LAMTOR3Q9UHA4 124 aa3.82□□□□□ -1.8
VIPAS39-204ENST00000553576 STARD9Q9P2P6 4700 aa3.81□□□□□ -1.8
VIPAS39-204ENST00000553576 A0A096LNI7 61 aa3.81□□□□□ -1.8
VIPAS39-204ENST00000553576 A0A1B0GV72 72 aa3.81□□□□□ -1.8
VIPAS39-204ENST00000553576 A0A1B0GW54 56 aa3.81□□□□□ -1.8
VIPAS39-204ENST00000553576 LINC01547P58512 204 aaPredicted RBP3.81□□□□□ -1.8
VIPAS39-204ENST00000553576 STAB2Q8WWQ8 2551 aa3.81□□□□□ -1.8
VIPAS39-204ENST00000553576 IGLV5-48A0A075B6I7 105 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 ETDCA0A1B0GVM5 59 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 RPL37AP8A6NKH3 93 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 LCE1AQ5T7P2 110 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 ATP5EP2Q5VTU8 51 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 REG3GQ6UW15 175 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 Q6ZR54 194 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 Q8N377 158 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 Q9BRP9 147 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 LINC00474Q9P2X8 69 aa3.8□□□□□ -1.8
VIPAS39-204ENST00000553576 DNAH2Q9P225 4427 aa3.79□□□□□ -1.8
VIPAS39-204ENST00000553576 A0A1W2PNN7 141 aa3.79□□□□□ -1.8
VIPAS39-204ENST00000553576 H0Y9J4 135 aa3.79□□□□□ -1.8
VIPAS39-204ENST00000553576 FAM19A5Q7Z5A7 132 aaPredicted RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms