RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 NDUFA5Q16718 116 aa7.09□□□□□ -1.27
PTCH1-221ENST00000550914 S100A7L2Q5SY68 101 aa7.09□□□□□ -1.27
PTCH1-221ENST00000550914 YPEL4Q96NS1 127 aa7.09□□□□□ -1.27
PTCH1-221ENST00000550914 TRAV23DV6A0A075B6W5 121 aa7.08□□□□□ -1.28
PTCH1-221ENST00000550914 C9orf153Q5TBE3 101 aa7.08□□□□□ -1.28
PTCH1-221ENST00000550914 H0Y8G0 127 aa7.07□□□□□ -1.28
PTCH1-221ENST00000550914 ZNF73O43830 326 aaPredicted RBP7.07□□□□□ -1.28
PTCH1-221ENST00000550914 HERVK_113P61574 105 aa7.07□□□□□ -1.28
PTCH1-221ENST00000550914 CBY1Q9Y3M2 126 aa7.07□□□□□ -1.28
PTCH1-221ENST00000550914 LEPROTL1O95214 131 aa7.06□□□□□ -1.28
PTCH1-221ENST00000550914 CRCT1Q9UGL9 99 aa7.06□□□□□ -1.28
PTCH1-221ENST00000550914 DPM2O94777 84 aa7.05□□□□□ -1.28
PTCH1-221ENST00000550914 LGALS3P17931 250 aaKnown RBP7.05□□□□□ -1.28
PTCH1-221ENST00000550914 LIMD2Q9BT23 127 aa7.05□□□□□ -1.28
PTCH1-221ENST00000550914 HINT1P49773 126 aaPredicted RBP7.04□□□□□ -1.28
PTCH1-221ENST00000550914 SLC25A34Q6PIV7 304 aa7.04□□□□□ -1.28
PTCH1-221ENST00000550914 TMEM238LA0A1B0GVL6 79 aa7.03□□□□□ -1.28
PTCH1-221ENST00000550914 SPRR1BP22528 89 aa7.03□□□□□ -1.28
PTCH1-221ENST00000550914 KRTAP19-2Q3LHN2 52 aa7.03□□□□□ -1.28
PTCH1-221ENST00000550914 ST20-AS1Q8NBB2 130 aa7.03□□□□□ -1.28
PTCH1-221ENST00000550914 HSPB8Q9UJY1 196 aa7.03□□□□□ -1.28
PTCH1-221ENST00000550914 IGKCP01834 107 aa7.02□□□□□ -1.29
PTCH1-221ENST00000550914 SOSTDC1Q6X4U4 206 aa7.02□□□□□ -1.29
PTCH1-221ENST00000550914 FSIP2Q5CZC0 6907 aa7.01□□□□□ -1.29
PTCH1-221ENST00000550914 SERF1AO75920 110 aa7.01□□□□□ -1.29
PTCH1-221ENST00000550914 CFC1BP0CG36 223 aa7.01□□□□□ -1.29
PTCH1-221ENST00000550914 LINC00310P59036 64 aa7.01□□□□□ -1.29
PTCH1-221ENST00000550914 A0A0J9YXY3 114 aa7□□□□□ -1.29
PTCH1-221ENST00000550914 EIF4EBP3O60516 100 aaPredicted RBP7□□□□□ -1.29
PTCH1-221ENST00000550914 ADAMTSL4-AS1Q5T5F5 129 aa7□□□□□ -1.29
PTCH1-221ENST00000550914 DHRS4-AS1Q9P1J3 65 aa7□□□□□ -1.29
PTCH1-221ENST00000550914 TRGC2P03986 189 aa6.99□□□□□ -1.29
PTCH1-221ENST00000550914 MT1HP80294 61 aa6.99□□□□□ -1.29
PTCH1-221ENST00000550914 PCOTHQ58A44 107 aa6.99□□□□□ -1.29
PTCH1-221ENST00000550914 SPANXCQ9NY87 97 aa6.99□□□□□ -1.29
PTCH1-221ENST00000550914 IGLV8-61A0A075B6I0 122 aa6.98□□□□□ -1.29
PTCH1-221ENST00000550914 E9PLD3 99 aa6.98□□□□□ -1.29
PTCH1-221ENST00000550914 NPC2P61916 151 aa6.98□□□□□ -1.29
PTCH1-221ENST00000550914 CD164Q04900 197 aa6.98□□□□□ -1.29
PTCH1-221ENST00000550914 PMCHL2Q9BQD1 86 aa6.98□□□□□ -1.29
PTCH1-221ENST00000550914 LAMTOR3Q9UHA4 124 aa6.98□□□□□ -1.29
PTCH1-221ENST00000550914 FABP4P15090 132 aa6.97□□□□□ -1.29
PTCH1-221ENST00000550914 TIMM17BO60830 172 aa6.96□□□□□ -1.3
PTCH1-221ENST00000550914 LINC00308Q8TCZ7 52 aa6.96□□□□□ -1.3
PTCH1-221ENST00000550914 C9orf92A6NGG3 77 aa6.95□□□□□ -1.3
PTCH1-221ENST00000550914 Q5XG85 94 aa6.95□□□□□ -1.3
PTCH1-221ENST00000550914 HRCT1Q6UXD1 115 aa6.95□□□□□ -1.3
PTCH1-221ENST00000550914 OR13C6PQ8NH95 151 aa6.95□□□□□ -1.3
PTCH1-221ENST00000550914 LITAFQ99732 161 aa6.95□□□□□ -1.3
PTCH1-221ENST00000550914 SPANXDQ9BXN6 97 aa6.95□□□□□ -1.3
PTCH1-221ENST00000550914 ELOF1P60002 83 aaKnown RBP6.94□□□□□ -1.3
PTCH1-221ENST00000550914 LINC00518Q8N0U6 118 aa6.93□□□□□ -1.3
PTCH1-221ENST00000550914 PRO1933Q9H354 126 aa6.93□□□□□ -1.3
PTCH1-221ENST00000550914 COX7BP24311 80 aa6.92□□□□□ -1.3
PTCH1-221ENST00000550914 TRBV7-6A0A0J9YX20 115 aa6.91□□□□□ -1.3
PTCH1-221ENST00000550914 TEX49A0A1B0GTD5 131 aa6.91□□□□□ -1.3
PTCH1-221ENST00000550914 H7C2G1 150 aa6.91□□□□□ -1.3
PTCH1-221ENST00000550914 TAL2Q16559 108 aa6.91□□□□□ -1.3
PTCH1-221ENST00000550914 KRTAP10-6P60371 365 aaPredicted RBP6.9□□□□□ -1.3
PTCH1-221ENST00000550914 Q1RN00 199 aa6.9□□□□□ -1.3
PTCH1-221ENST00000550914 C6orf99Q4VX62 202 aa6.9□□□□□ -1.3
PTCH1-221ENST00000550914 SYS1-DBNDD2H3BUS1 97 aa6.89□□□□□ -1.31
PTCH1-221ENST00000550914 AKR1D1P51857 326 aa6.89□□□□□ -1.31
PTCH1-221ENST00000550914 FLGP20930 4061 aaPredicted RBP6.89□□□□□ -1.31
PTCH1-221ENST00000550914 C1orf195Q5TG92 126 aa6.88□□□□□ -1.31
PTCH1-221ENST00000550914 ZNF815PA8K554 130 aa6.87□□□□□ -1.31
PTCH1-221ENST00000550914 RPL37P61927 97 aaKnown RBP6.87□□□□□ -1.31
PTCH1-221ENST00000550914 SMIM29Q86T20 159 aa6.87□□□□□ -1.31
PTCH1-221ENST00000550914 DEFB105AQ8NG35 78 aa6.87□□□□□ -1.31
PTCH1-221ENST00000550914 IGLV5-48A0A075B6I7 105 aa6.86□□□□□ -1.31
PTCH1-221ENST00000550914 LINC01545Q5VT33 79 aa6.86□□□□□ -1.31
PTCH1-221ENST00000550914 A0A1B0GWB2 263 aa6.85□□□□□ -1.31
PTCH1-221ENST00000550914 COLCA2A8K830 154 aa6.85□□□□□ -1.31
PTCH1-221ENST00000550914 COPS9Q8WXC6 57 aa6.85□□□□□ -1.31
PTCH1-221ENST00000550914 M0R2T5 61 aa6.84□□□□□ -1.31
PTCH1-221ENST00000550914 PET117Q6UWS5 81 aa6.84□□□□□ -1.31
PTCH1-221ENST00000550914 A4D1N5 150 aa6.83□□□□□ -1.32
PTCH1-221ENST00000550914 COX6B2Q6YFQ2 88 aa6.83□□□□□ -1.32
PTCH1-221ENST00000550914 TCL1BO95988 128 aa6.82□□□□□ -1.32
PTCH1-221ENST00000550914 IFITM1P13164 125 aa6.82□□□□□ -1.32
PTCH1-221ENST00000550914 TTTY13Q9BZ97 58 aa6.81□□□□□ -1.32
PTCH1-221ENST00000550914 SCGB1D4Q6XE38 83 aa6.8□□□□□ -1.32
PTCH1-221ENST00000550914 Q6ZVH6 145 aa6.8□□□□□ -1.32
PTCH1-221ENST00000550914 NHP2Q9NX24 153 aaKnown RBP6.8□□□□□ -1.32
PTCH1-221ENST00000550914 A6NDN8 102 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BKO60814 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BJP06899 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BOP23527 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BBP33778 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BDP58876 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BCP62807 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST2H2BEQ16778 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BHQ93079 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BNQ99877 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 HIST1H2BMQ99879 126 aa6.79□□□□□ -1.32
PTCH1-221ENST00000550914 A0A0G2JQZ4 141 aa6.78□□□□□ -1.32
PTCH1-221ENST00000550914 LOC100996750A0A140TA64 210 aa6.77□□□□□ -1.33
PTCH1-221ENST00000550914 C3orf79P0CE67 100 aa6.77□□□□□ -1.33
PTCH1-221ENST00000550914 KRTAP4-6Q9BYQ5 205 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms