RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 A0A1B0GX51 115 aa4.66□□□□□ -1.66
VPS53-205ENST00000541903 C9JAW5 83 aa4.66□□□□□ -1.66
VPS53-205ENST00000541903 SLC25A20O43772 301 aa4.66□□□□□ -1.66
VPS53-205ENST00000541903 ELOF1P60002 83 aaKnown RBP4.66□□□□□ -1.66
VPS53-205ENST00000541903 PHF5AQ7RTV0 110 aaKnown RBP4.66□□□□□ -1.66
VPS53-205ENST00000541903 FAM218AQ96MZ4 157 aa4.66□□□□□ -1.66
VPS53-205ENST00000541903 ETDCA0A1B0GVM5 59 aa4.65□□□□□ -1.67
VPS53-205ENST00000541903 F8W1H4 67 aa4.65□□□□□ -1.67
VPS53-205ENST00000541903 REG3GQ6UW15 175 aa4.65□□□□□ -1.67
VPS53-205ENST00000541903 MTURNQ8N3F0 131 aa4.65□□□□□ -1.67
VPS53-205ENST00000541903 PLAC8Q9NZF1 115 aa4.65□□□□□ -1.67
VPS53-205ENST00000541903 DNAH10Q8IVF4 4471 aa4.65□□□□□ -1.67
VPS53-205ENST00000541903 hADV29S1A0JD25 119 aa4.64□□□□□ -1.67
VPS53-205ENST00000541903 EPM2AB3EWF7 344 aa4.64□□□□□ -1.67
VPS53-205ENST00000541903 SPRR1AP35321 89 aa4.64□□□□□ -1.67
VPS53-205ENST00000541903 LINC00575Q6W349 94 aa4.64□□□□□ -1.67
VPS53-205ENST00000541903 PRO0461Q9UI25 63 aa4.64□□□□□ -1.67
VPS53-205ENST00000541903 KMT2AQ03164 3969 aa4.64□□□□□ -1.67
VPS53-205ENST00000541903 H3BT86 120 aa4.63□□□□□ -1.67
VPS53-205ENST00000541903 KRTAP10-1P60331 282 aa4.63□□□□□ -1.67
VPS53-205ENST00000541903 Q6ZRX8 168 aa4.63□□□□□ -1.67
VPS53-205ENST00000541903 LINC00528Q8N1L1 170 aa4.63□□□□□ -1.67
VPS53-205ENST00000541903 B5MCH6 92 aa4.62□□□□□ -1.67
VPS53-205ENST00000541903 INAFM2P0DMQ5 153 aa4.62□□□□□ -1.67
VPS53-205ENST00000541903 FAM19A1Q7Z5A9 133 aa4.62□□□□□ -1.67
VPS53-205ENST00000541903 ANKRD29Q8N6D5 301 aa4.62□□□□□ -1.67
VPS53-205ENST00000541903 ORMDL1Q9P0S3 153 aa4.62□□□□□ -1.67
VPS53-205ENST00000541903 DHRS4-AS1Q9P1J3 65 aa4.62□□□□□ -1.67
VPS53-205ENST00000541903 A0A1B0GVY2 172 aa4.61□□□□□ -1.67
VPS53-205ENST00000541903 KRTAP4-16G5E9R7 235 aaPredicted RBP4.61□□□□□ -1.67
VPS53-205ENST00000541903 GHRHP01286 108 aa4.61□□□□□ -1.67
VPS53-205ENST00000541903 BAALC-AS2P0C853 105 aa4.61□□□□□ -1.67
VPS53-205ENST00000541903 SMCPP49901 116 aaPredicted RBP4.61□□□□□ -1.67
VPS53-205ENST00000541903 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.61□□□□□ -1.67
VPS53-205ENST00000541903 Q6ZSA8 131 aa4.61□□□□□ -1.67
VPS53-205ENST00000541903 DNAH17Q9UFH2 4485 aa4.61□□□□□ -1.67
VPS53-205ENST00000541903 DNAH2Q9P225 4427 aa4.61□□□□□ -1.67
VPS53-205ENST00000541903 H3BQ85 93 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 BCE1O60756 84 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 UBE2AP49459 152 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 PRLHP81277 87 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 Q6ZQY7 126 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 SCXQ7RTU7 201 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 KRTAP11-1Q8IUC1 163 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 CIRBP-AS1Q8TBR5 109 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 FAM30AQ9NZY2 134 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 RYR2Q92736 4967 aa4.6□□□□□ -1.67
VPS53-205ENST00000541903 HYDINQ4G0P3 5121 aa4.59□□□□□ -1.67
VPS53-205ENST00000541903 SACSQ9NZJ4 4579 aa4.59□□□□□ -1.67
VPS53-205ENST00000541903 ETDBQ3ZM63 59 aa4.59□□□□□ -1.67
VPS53-205ENST00000541903 OCIAD2Q56VL3 154 aa4.59□□□□□ -1.67
VPS53-205ENST00000541903 TEN1Q86WV5 123 aa4.59□□□□□ -1.67
VPS53-205ENST00000541903 LINC01600Q96MT4 127 aa4.59□□□□□ -1.67
VPS53-205ENST00000541903 BIRC6Q9NR09 4857 aa4.59□□□□□ -1.67
VPS53-205ENST00000541903 H0Y9J4 135 aa4.58□□□□□ -1.68
VPS53-205ENST00000541903 TMEM256-PLSCR3K7ERE1 68 aa4.58□□□□□ -1.68
VPS53-205ENST00000541903 Q9BRP9 147 aa4.58□□□□□ -1.68
VPS53-205ENST00000541903 HIGD2AQ9BW72 106 aa4.58□□□□□ -1.68
VPS53-205ENST00000541903 HAMPP81172 84 aa4.57□□□□□ -1.68
VPS53-205ENST00000541903 C1orf137Q5JT78 98 aa4.57□□□□□ -1.68
VPS53-205ENST00000541903 SMCR5Q8TEV8 140 aa4.57□□□□□ -1.68
VPS53-205ENST00000541903 PSORS1C2Q9UIG4 136 aa4.57□□□□□ -1.68
VPS53-205ENST00000541903 EPPK1P58107 5090 aaKnown RBP4.57□□□□□ -1.68
VPS53-205ENST00000541903 PPDPFLQ8WWR9 84 aa4.56□□□□□ -1.68
VPS53-205ENST00000541903 ERC2-IT1O76042 136 aa4.55□□□□□ -1.68
VPS53-205ENST00000541903 KRTAP13-1Q8IUC0 172 aa4.55□□□□□ -1.68
VPS53-205ENST00000541903 DEFB105AQ8NG35 78 aa4.55□□□□□ -1.68
VPS53-205ENST00000541903 LAMTOR3Q9UHA4 124 aa4.55□□□□□ -1.68
VPS53-205ENST00000541903 IGLV5-48A0A075B6I7 105 aa4.54□□□□□ -1.68
VPS53-205ENST00000541903 TEX49A0A1B0GTD5 131 aa4.54□□□□□ -1.68
VPS53-205ENST00000541903 JMJD7-PLA2G4BH0Y9G9 81 aa4.54□□□□□ -1.68
VPS53-205ENST00000541903 J3QR89 54 aa4.54□□□□□ -1.68
VPS53-205ENST00000541903 ST20-AS1Q8NBB2 130 aa4.54□□□□□ -1.68
VPS53-205ENST00000541903 FRAS1Q86XX4 4008 aa4.54□□□□□ -1.68
VPS53-205ENST00000541903 FAT2Q9NYQ8 4349 aa4.53□□□□□ -1.68
VPS53-205ENST00000541903 A0A1B0GV72 72 aa4.53□□□□□ -1.68
VPS53-205ENST00000541903 ZNF861PO60384 105 aa4.53□□□□□ -1.68
VPS53-205ENST00000541903 IGLV7-43P04211 117 aa4.53□□□□□ -1.68
VPS53-205ENST00000541903 ZNF706Q9Y5V0 76 aaPredicted RBP4.53□□□□□ -1.68
VPS53-205ENST00000541903 DNAH11Q96DT5 4516 aa4.53□□□□□ -1.69
VPS53-205ENST00000541903 DNAH5Q8TE73 4624 aa4.52□□□□□ -1.69
VPS53-205ENST00000541903 F8WEM9 126 aa4.52□□□□□ -1.69
VPS53-205ENST00000541903 K7ERU9 68 aa4.52□□□□□ -1.69
VPS53-205ENST00000541903 NDUFV3P56181 108 aaKnown RBP4.52□□□□□ -1.69
VPS53-205ENST00000541903 LINC01547P58512 204 aaPredicted RBP4.52□□□□□ -1.69
VPS53-205ENST00000541903 Q8N377 158 aa4.52□□□□□ -1.69
VPS53-205ENST00000541903 C14orf132Q9NPU4 83 aa4.52□□□□□ -1.69
VPS53-205ENST00000541903 RBM3P98179 157 aaKnown RBP4.51□□□□□ -1.69
VPS53-205ENST00000541903 GAGE2AQ6NT46 116 aa4.51□□□□□ -1.69
VPS53-205ENST00000541903 OBSCN-AS1Q96MR7 158 aa4.51□□□□□ -1.69
VPS53-205ENST00000541903 HECTD4Q9Y4D8 3996 aa4.5□□□□□ -1.69
VPS53-205ENST00000541903 SPRR1BP22528 89 aa4.5□□□□□ -1.69
VPS53-205ENST00000541903 XGP55808 180 aa4.5□□□□□ -1.69
VPS53-205ENST00000541903 RPL37AP61513 92 aaKnown RBP4.5□□□□□ -1.69
VPS53-205ENST00000541903 SPRR4Q96PI1 79 aa4.5□□□□□ -1.69
VPS53-205ENST00000541903 DSCR8Q96T75 97 aa4.5□□□□□ -1.69
VPS53-205ENST00000541903 C3orf22Q8N5N4 141 aa4.49□□□□□ -1.69
VPS53-205ENST00000541903 LOC110117498A0A087WWA1 95 aa4.48□□□□□ -1.69
VPS53-205ENST00000541903 PDE6GP18545 87 aa4.48□□□□□ -1.69
VPS53-205ENST00000541903 C21orf62-AS1Q17RA5 79 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms