RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 C15orf56Q8N910 161 aa8.24□□□□□ -1.09
RNF4-222ENST00000541204 DNAH3Q8TD57 4116 aa8.24□□□□□ -1.09
RNF4-222ENST00000541204 CXCL6P80162 114 aa8.23□□□□□ -1.09
RNF4-222ENST00000541204 TRAV7A0A075B6U4 112 aa8.22□□□□□ -1.09
RNF4-222ENST00000541204 M0R378 163 aa8.22□□□□□ -1.09
RNF4-222ENST00000541204 STAB2Q8WWQ8 2551 aa8.22□□□□□ -1.09
RNF4-222ENST00000541204 LINC01556Q5JQF7 62 aa8.22□□□□□ -1.09
RNF4-222ENST00000541204 TRBV7-6A0A0J9YX20 115 aa8.22□□□□□ -1.09
RNF4-222ENST00000541204 NDUFC2-KCTD14E9PQ53 114 aa8.22□□□□□ -1.09
RNF4-222ENST00000541204 Q6ZRP5 223 aa8.21□□□□□ -1.1
RNF4-222ENST00000541204 LINC00528Q8N1L1 170 aa8.21□□□□□ -1.1
RNF4-222ENST00000541204 LINC00588Q9Y4M8 146 aa8.21□□□□□ -1.1
RNF4-222ENST00000541204 BCE1O60756 84 aa8.2□□□□□ -1.1
RNF4-222ENST00000541204 TM2D3Q9BRN9 247 aa8.19□□□□□ -1.1
RNF4-222ENST00000541204 COL7A1Q02388 2944 aa8.19□□□□□ -1.1
RNF4-222ENST00000541204 SNURFQ9Y675 71 aa8.19□□□□□ -1.1
RNF4-222ENST00000541204 H7BZZ5 65 aa8.18□□□□□ -1.1
RNF4-222ENST00000541204 CASC10Q5T4H9 136 aa8.18□□□□□ -1.1
RNF4-222ENST00000541204 HUWE1Q7Z6Z7 4374 aaKnown RBP8.17□□□□□ -1.1
RNF4-222ENST00000541204 FAM236DA0A1B0GTK5 79 aa8.17□□□□□ -1.1
RNF4-222ENST00000541204 FAM236CP0DP71 79 aa8.17□□□□□ -1.1
RNF4-222ENST00000541204 DNAH10OSP0CZ25 163 aa8.16□□□□□ -1.1
RNF4-222ENST00000541204 RMI2Q96E14 147 aa8.16□□□□□ -1.1
RNF4-222ENST00000541204 KLKP1Q107X0 134 aa8.16□□□□□ -1.1
RNF4-222ENST00000541204 Q8N9L7 120 aa8.16□□□□□ -1.1
RNF4-222ENST00000541204 SYCNQ0VAF6 134 aa8.15□□□□□ -1.1
RNF4-222ENST00000541204 C4orf26Q17RF5 130 aa8.15□□□□□ -1.11
RNF4-222ENST00000541204 C5orf47Q569G3 176 aa8.15□□□□□ -1.11
RNF4-222ENST00000541204 DEFB105AQ8NG35 78 aa8.15□□□□□ -1.11
RNF4-222ENST00000541204 LYSTQ99698 3801 aa8.14□□□□□ -1.11
RNF4-222ENST00000541204 TENM2Q9NT68 2774 aa8.14□□□□□ -1.11
RNF4-222ENST00000541204 MDFIQ99750 246 aa8.14□□□□□ -1.11
RNF4-222ENST00000541204 SERTAD4-AS1Q5TG53 156 aa8.14□□□□□ -1.11
RNF4-222ENST00000541204 Q5XG85 94 aa8.14□□□□□ -1.11
RNF4-222ENST00000541204 NKAPP1Q8N9T2 125 aa8.13□□□□□ -1.11
RNF4-222ENST00000541204 C3orf84H3BNL1 204 aa8.12□□□□□ -1.11
RNF4-222ENST00000541204 F8WEM9 126 aa8.12□□□□□ -1.11
RNF4-222ENST00000541204 C7orf33Q8WU49 177 aa8.11□□□□□ -1.11
RNF4-222ENST00000541204 KCNQ1DNQ9H478 68 aa8.11□□□□□ -1.11
RNF4-222ENST00000541204 BPY2O14599 106 aa8.11□□□□□ -1.11
RNF4-222ENST00000541204 NREPQ16612 68 aa8.11□□□□□ -1.11
RNF4-222ENST00000541204 Q8N377 158 aa8.1□□□□□ -1.11
RNF4-222ENST00000541204 IGKV4-1P06312 121 aa8.1□□□□□ -1.11
RNF4-222ENST00000541204 RPL37AP8A6NKH3 93 aa8.09□□□□□ -1.11
RNF4-222ENST00000541204 HRCT1Q6UXD1 115 aa8.09□□□□□ -1.11
RNF4-222ENST00000541204 SERP1Q9Y6X1 66 aa8.09□□□□□ -1.11
RNF4-222ENST00000541204 FAM168BA1KXE4 195 aa8.08□□□□□ -1.12
RNF4-222ENST00000541204 F8WDY8 70 aa8.07□□□□□ -1.12
RNF4-222ENST00000541204 EPM2AB3EWF7 344 aa8.06□□□□□ -1.12
RNF4-222ENST00000541204 IGLV5-48A0A075B6I7 105 aa8.05□□□□□ -1.12
RNF4-222ENST00000541204 TMEM254Q8TBM7 123 aa8.05□□□□□ -1.12
RNF4-222ENST00000541204 Q9BRP9 147 aa8.05□□□□□ -1.12
RNF4-222ENST00000541204 KRTAP1-5Q9BYS1 174 aa8.05□□□□□ -1.12
RNF4-222ENST00000541204 Q6ZRX8 168 aa8.05□□□□□ -1.12
RNF4-222ENST00000541204 NDUFC1O43677 76 aa8.04□□□□□ -1.12
RNF4-222ENST00000541204 UBE2DNLQ8IWF7 75 aa8.04□□□□□ -1.12
RNF4-222ENST00000541204 ST20-AS1Q8NBB2 130 aa8.04□□□□□ -1.12
RNF4-222ENST00000541204 DNAH10Q8IVF4 4471 aa8.03□□□□□ -1.12
RNF4-222ENST00000541204 DHRS4-AS1Q9P1J3 65 aa8.03□□□□□ -1.12
RNF4-222ENST00000541204 IGLV1-50A0A075B6I6 118 aa8.03□□□□□ -1.12
RNF4-222ENST00000541204 KRTAP4-16G5E9R7 235 aaPredicted RBP8.03□□□□□ -1.12
RNF4-222ENST00000541204 TLX1NBP0CAT3 122 aa8.03□□□□□ -1.12
RNF4-222ENST00000541204 OCR1Q9BZK8 76 aa8.03□□□□□ -1.12
RNF4-222ENST00000541204 ETDCA0A1B0GVM5 59 aa8.02□□□□□ -1.13
RNF4-222ENST00000541204 A0A1W2PNM2 257 aa8.02□□□□□ -1.13
RNF4-222ENST00000541204 FUSP35637 526 aaKnown RBP eCLIP8.02□□□□□ -1.133e-6■□□□□ 10.6
RNF4-222ENST00000541204 KRTAP7-1Q8IUC3 87 aa8.02□□□□□ -1.13
RNF4-222ENST00000541204 CSMD3Q7Z407 3707 aa8.02□□□□□ -1.13
RNF4-222ENST00000541204 PLA2G2DQ9UNK4 145 aa8.01□□□□□ -1.13
RNF4-222ENST00000541204 DNAH1Q9P2D7 4330 aa8.01□□□□□ -1.13
RNF4-222ENST00000541204 PSCAO43653 123 aa8□□□□□ -1.13
RNF4-222ENST00000541204 ERC2-IT1O76042 136 aa8□□□□□ -1.13
RNF4-222ENST00000541204 C1orf137Q5JT78 98 aa8□□□□□ -1.13
RNF4-222ENST00000541204 DNAH9Q9NYC9 4486 aa8□□□□□ -1.13
RNF4-222ENST00000541204 PRYO14603 147 aa8□□□□□ -1.13
RNF4-222ENST00000541204 SPRR1AP35321 89 aa7.99□□□□□ -1.13
RNF4-222ENST00000541204 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.99□□□□□ -1.13
RNF4-222ENST00000541204 TNP2Q05952 138 aa7.99□□□□□ -1.13
RNF4-222ENST00000541204 IGKV2-24A0A0C4DH68 120 aa7.99□□□□□ -1.13
RNF4-222ENST00000541204 FP248Q71RG6 208 aaPredicted RBP7.98□□□□□ -1.13
RNF4-222ENST00000541204 IGLV5-37A0A075B6J1 123 aa7.98□□□□□ -1.13
RNF4-222ENST00000541204 A0A0U1RQV1 116 aa7.98□□□□□ -1.13
RNF4-222ENST00000541204 SMIM29Q86T20 159 aa7.98□□□□□ -1.13
RNF4-222ENST00000541204 DNAH7Q8WXX0 4024 aa7.98□□□□□ -1.13
RNF4-222ENST00000541204 HIGD2AQ9BW72 106 aa7.97□□□□□ -1.13
RNF4-222ENST00000541204 APLNQ9ULZ1 77 aa7.97□□□□□ -1.13
RNF4-222ENST00000541204 MRPL55Q7Z7F7 128 aaKnown RBP7.97□□□□□ -1.13
RNF4-222ENST00000541204 Q8NBF4 154 aa7.97□□□□□ -1.13
RNF4-222ENST00000541204 FAM30AQ9NZY2 134 aa7.97□□□□□ -1.13
RNF4-222ENST00000541204 SMIM26A0A096LP01 95 aa7.96□□□□□ -1.13
RNF4-222ENST00000541204 UBE2BP63146 152 aa7.96□□□□□ -1.13
RNF4-222ENST00000541204 LINC00474Q9P2X8 69 aa7.96□□□□□ -1.13
RNF4-222ENST00000541204 ATP5EP56381 51 aaPredicted RBP7.96□□□□□ -1.14
RNF4-222ENST00000541204 B9D2Q9BPU9 175 aa7.96□□□□□ -1.14
RNF4-222ENST00000541204 A0A1B0GW54 56 aa7.94□□□□□ -1.14
RNF4-222ENST00000541204 SPRR4Q96PI1 79 aa7.93□□□□□ -1.14
RNF4-222ENST00000541204 A0A096LNI7 61 aa7.93□□□□□ -1.14
RNF4-222ENST00000541204 A0A0G2JQZ4 141 aa7.93□□□□□ -1.14
RNF4-222ENST00000541204 A0A1W2PNN7 141 aa7.93□□□□□ -1.14
RNF4-222ENST00000541204 DSCR10P59022 87 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms