RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 C14orf132Q9NPU4 83 aa9.02□□□□□ -0.97
RTN3-210ENST00000540798 V9GYY9 64 aa9□□□□□ -0.97
RTN3-210ENST00000540798 DIRC1Q969H9 104 aa9□□□□□ -0.97
RTN3-210ENST00000540798 MGAM2Q2M2H8 2515 aa9□□□□□ -0.97
RTN3-210ENST00000540798 ZNF73O43830 326 aaPredicted RBP9□□□□□ -0.97
RTN3-210ENST00000540798 CASC10Q5T4H9 136 aa9□□□□□ -0.97
RTN3-210ENST00000540798 RMI2Q96E14 147 aa9□□□□□ -0.97
RTN3-210ENST00000540798 JMJD7-PLA2G4BH0Y9G9 81 aa8.99□□□□□ -0.97
RTN3-210ENST00000540798 ELOF1P60002 83 aaKnown RBP8.99□□□□□ -0.97
RTN3-210ENST00000540798 HIST1H4AP62805 103 aaKnown RBP8.99□□□□□ -0.97
RTN3-210ENST00000540798 FBN3Q75N90 2809 aa8.99□□□□□ -0.97
RTN3-210ENST00000540798 USP17L23D6RBM5 183 aa8.98□□□□□ -0.97
RTN3-210ENST00000540798 SERP2Q8N6R1 65 aa8.98□□□□□ -0.97
RTN3-210ENST00000540798 BRK1Q8WUW1 75 aa8.98□□□□□ -0.97
RTN3-210ENST00000540798 PLA2G2DQ9UNK4 145 aa8.98□□□□□ -0.97
RTN3-210ENST00000540798 B9D2Q9BPU9 175 aa8.97□□□□□ -0.97
RTN3-210ENST00000540798 LYSTQ99698 3801 aa8.96□□□□□ -0.97
RTN3-210ENST00000540798 H3BQ85 93 aa8.96□□□□□ -0.98
RTN3-210ENST00000540798 CCKP06307 115 aa8.96□□□□□ -0.98
RTN3-210ENST00000540798 COX7BP24311 80 aa8.96□□□□□ -0.98
RTN3-210ENST00000540798 C1orf195Q5TG92 126 aa8.95□□□□□ -0.98
RTN3-210ENST00000540798 APLNQ9ULZ1 77 aa8.94□□□□□ -0.98
RTN3-210ENST00000540798 IGLV5-37A0A075B6J1 123 aa8.94□□□□□ -0.98
RTN3-210ENST00000540798 SERTAD4-AS1Q5TG53 156 aa8.94□□□□□ -0.98
RTN3-210ENST00000540798 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.94□□□□□ -0.98
RTN3-210ENST00000540798 LINC00528Q8N1L1 170 aa8.94□□□□□ -0.98
RTN3-210ENST00000540798 LINC00474Q9P2X8 69 aa8.94□□□□□ -0.98
RTN3-210ENST00000540798 Q6ZQY7 126 aa8.93□□□□□ -0.98
RTN3-210ENST00000540798 KCNQ1DNQ9H478 68 aa8.93□□□□□ -0.98
RTN3-210ENST00000540798 C20orf197Q8N268 126 aa8.93□□□□□ -0.98
RTN3-210ENST00000540798 KRTAP1-5Q9BYS1 174 aa8.93□□□□□ -0.98
RTN3-210ENST00000540798 LINC00846Q9NV44 126 aa8.93□□□□□ -0.98
RTN3-210ENST00000540798 CSMD3Q7Z407 3707 aa8.92□□□□□ -0.98
RTN3-210ENST00000540798 STAB2Q8WWQ8 2551 aa8.92□□□□□ -0.98
RTN3-210ENST00000540798 FP248Q71RG6 208 aaPredicted RBP8.91□□□□□ -0.98
RTN3-210ENST00000540798 C7orf33Q8WU49 177 aa8.91□□□□□ -0.98
RTN3-210ENST00000540798 LOC110117498A0A087WWA1 95 aa8.91□□□□□ -0.98
RTN3-210ENST00000540798 DNAH10Q8IVF4 4471 aa8.91□□□□□ -0.98
RTN3-210ENST00000540798 KRTAP7-1Q8IUC3 87 aa8.89□□□□□ -0.99
RTN3-210ENST00000540798 NKAPP1Q8N9T2 125 aa8.89□□□□□ -0.99
RTN3-210ENST00000540798 Q6ZQT0 140 aa8.89□□□□□ -0.99
RTN3-210ENST00000540798 DNAH7Q8WXX0 4024 aa8.89□□□□□ -0.99
RTN3-210ENST00000540798 RBM3P98179 157 aaKnown RBP8.88□□□□□ -0.99
RTN3-210ENST00000540798 Q6JHZ5 121 aa8.88□□□□□ -0.99
RTN3-210ENST00000540798 PLECQ15149 4684 aaKnown RBP8.87□□□□□ -0.99
RTN3-210ENST00000540798 GHRHP01286 108 aa8.87□□□□□ -0.99
RTN3-210ENST00000540798 FAM168BA1KXE4 195 aa8.86□□□□□ -0.99
RTN3-210ENST00000540798 KRTAP4-16G5E9R7 235 aaPredicted RBP8.86□□□□□ -0.99
RTN3-210ENST00000540798 IGLV1-50A0A075B6I6 118 aa8.86□□□□□ -0.99
RTN3-210ENST00000540798 SPRR1AP35321 89 aa8.86□□□□□ -0.99
RTN3-210ENST00000540798 LAMTOR3Q9UHA4 124 aa8.86□□□□□ -0.99
RTN3-210ENST00000540798 CNBPP62633 177 aaKnown RBP8.85□□□□□ -0.99
RTN3-210ENST00000540798 PRYO14603 147 aa8.85□□□□□ -0.99
RTN3-210ENST00000540798 PDE6GP18545 87 aa8.84□□□□□ -0.99
RTN3-210ENST00000540798 TRBV7-4A0A0J9YYF1 115 aa8.83□□□□□ -1
RTN3-210ENST00000540798 UBE2DNLQ8IWF7 75 aa8.83□□□□□ -1
RTN3-210ENST00000540798 SNURFQ9Y675 71 aa8.83□□□□□ -1
RTN3-210ENST00000540798 FAM19A1Q7Z5A9 133 aa8.83□□□□□ -1
RTN3-210ENST00000540798 MPLKIPQ8TAP9 179 aa8.83□□□□□ -1
RTN3-210ENST00000540798 NUPR2A6NF83 97 aa8.81□□□□□ -1
RTN3-210ENST00000540798 Q6ZRX8 168 aa8.81□□□□□ -1
RTN3-210ENST00000540798 MRPL55Q7Z7F7 128 aaKnown RBP8.81□□□□□ -1
RTN3-210ENST00000540798 SERP1Q9Y6X1 66 aa8.81□□□□□ -1
RTN3-210ENST00000540798 PRKDCP78527 4128 aaKnown RBP8.8□□□□□ -1
RTN3-210ENST00000540798 M0R2N4 97 aa8.8□□□□□ -1
RTN3-210ENST00000540798 MEGF8Q7Z7M0 2845 aa8.8□□□□□ -1
RTN3-210ENST00000540798 RPL37AP8A6NKH3 93 aa8.8□□□□□ -1
RTN3-210ENST00000540798 H7BZZ5 65 aa8.8□□□□□ -1
RTN3-210ENST00000540798 ATP5EP2Q5VTU8 51 aa8.8□□□□□ -1
RTN3-210ENST00000540798 VPS13DQ5THJ4 4388 aa8.79□□□□□ -1
RTN3-210ENST00000540798 DHRS4-AS1Q9P1J3 65 aa8.79□□□□□ -1
RTN3-210ENST00000540798 C16orf90A8MZG2 172 aa8.79□□□□□ -1
RTN3-210ENST00000540798 LINC01547P58512 204 aaPredicted RBP8.79□□□□□ -1
RTN3-210ENST00000540798 Q9BRP9 147 aa8.79□□□□□ -1
RTN3-210ENST00000540798 STARD9Q9P2P6 4700 aa8.79□□□□□ -1
RTN3-210ENST00000540798 C14orf177Q52M58 125 aa8.78□□□□□ -1
RTN3-210ENST00000540798 A0A096LNI7 61 aa8.77□□□□□ -1.01
RTN3-210ENST00000540798 EPM2AB3EWF7 344 aa8.77□□□□□ -1.01
RTN3-210ENST00000540798 PSCAO43653 123 aa8.77□□□□□ -1.01
RTN3-210ENST00000540798 NBDYA0A0U1RRE5 68 aa8.76□□□□□ -1.01
RTN3-210ENST00000540798 Q8N377 158 aa8.76□□□□□ -1.01
RTN3-210ENST00000540798 UBL5Q9BZL1 73 aa8.76□□□□□ -1.01
RTN3-210ENST00000540798 LRCOL1A6NCL2 159 aa8.76□□□□□ -1.01
RTN3-210ENST00000540798 FAM229BQ4G0N7 80 aa8.76□□□□□ -1.01
RTN3-210ENST00000540798 SMIM26A0A096LP01 95 aa8.75□□□□□ -1.01
RTN3-210ENST00000540798 Q6ZRN7 208 aaPredicted RBP8.75□□□□□ -1.01
RTN3-210ENST00000540798 ETDCA0A1B0GVM5 59 aa8.75□□□□□ -1.01
RTN3-210ENST00000540798 F8WEM9 126 aa8.75□□□□□ -1.01
RTN3-210ENST00000540798 IGLV5-48A0A075B6I7 105 aa8.74□□□□□ -1.01
RTN3-210ENST00000540798 A0A1W2PNN7 141 aa8.73□□□□□ -1.01
RTN3-210ENST00000540798 REG3GQ6UW15 175 aa8.73□□□□□ -1.01
RTN3-210ENST00000540798 TENM2Q9NT68 2774 aa8.73□□□□□ -1.01
RTN3-210ENST00000540798 TGP01266 2768 aa8.72□□□□□ -1.01
RTN3-210ENST00000540798 Q6ZVQ6 151 aa8.72□□□□□ -1.01
RTN3-210ENST00000540798 TNP2Q05952 138 aa8.71□□□□□ -1.02
RTN3-210ENST00000540798 C9orf163Q8N9P6 203 aa8.7□□□□□ -1.02
RTN3-210ENST00000540798 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.69□□□□□ -1.02
RTN3-210ENST00000540798 IGKV2-24A0A0C4DH68 120 aa8.69□□□□□ -1.02
RTN3-210ENST00000540798 ERC2-IT1O76042 136 aa8.69□□□□□ -1.02
RTN3-210ENST00000540798 DEFB105AQ8NG35 78 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms