RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 EIF4EBP3O60516 100 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-202ENST00000527827 SOSTDC1Q6X4U4 206 aa12.81□□□□□ -0.36
CPSF1-202ENST00000527827 SNAPINO95295 136 aa12.8□□□□□ -0.36
CPSF1-202ENST00000527827 NMUP48645 174 aa12.8□□□□□ -0.36
CPSF1-202ENST00000527827 C5orf52A6NGY3 159 aa12.79□□□□□ -0.36
CPSF1-202ENST00000527827 C9orf92A6NGG3 77 aa12.78□□□□□ -0.36
CPSF1-202ENST00000527827 CFC1BP0CG36 223 aa12.78□□□□□ -0.36
CPSF1-202ENST00000527827 PLNP26678 52 aa12.78□□□□□ -0.36
CPSF1-202ENST00000527827 SPRR1BP22528 89 aa12.77□□□□□ -0.37
CPSF1-202ENST00000527827 NPC2P61916 151 aa12.77□□□□□ -0.37
CPSF1-202ENST00000527827 HRCT1Q6UXD1 115 aa12.77□□□□□ -0.37
CPSF1-202ENST00000527827 SVBPQ8N300 66 aa12.77□□□□□ -0.37
CPSF1-202ENST00000527827 LIMD2Q9BT23 127 aa12.77□□□□□ -0.37
CPSF1-202ENST00000527827 LEPROTL1O95214 131 aa12.76□□□□□ -0.37
CPSF1-202ENST00000527827 LGALS3P17931 250 aaKnown RBP12.76□□□□□ -0.37
CPSF1-202ENST00000527827 ADAMTSL4-AS1Q5T5F5 129 aa12.76□□□□□ -0.37
CPSF1-202ENST00000527827 HERVK_113P61574 105 aa12.75□□□□□ -0.37
CPSF1-202ENST00000527827 DPM2O94777 84 aa12.74□□□□□ -0.37
CPSF1-202ENST00000527827 LORP23490 312 aaPredicted RBP12.74□□□□□ -0.37
CPSF1-202ENST00000527827 LINC00310P59036 64 aa12.74□□□□□ -0.37
CPSF1-202ENST00000527827 PMCHL2Q9BQD1 86 aa12.74□□□□□ -0.37
CPSF1-202ENST00000527827 A0A0J9YXY3 114 aa12.72□□□□□ -0.37
CPSF1-202ENST00000527827 NDUFA5Q16718 116 aa12.72□□□□□ -0.37
CPSF1-202ENST00000527827 HINT1P49773 126 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-202ENST00000527827 KRTAP10-6P60371 365 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-202ENST00000527827 SERF1AO75920 110 aa12.7□□□□□ -0.38
CPSF1-202ENST00000527827 IGKCP01834 107 aa12.7□□□□□ -0.38
CPSF1-202ENST00000527827 SLC25A34Q6PIV7 304 aa12.69□□□□□ -0.38
CPSF1-202ENST00000527827 CBY1Q9Y3M2 126 aa12.68□□□□□ -0.38
CPSF1-202ENST00000527827 LAMTOR3Q9UHA4 124 aa12.67□□□□□ -0.38
CPSF1-202ENST00000527827 TRGC2P03986 189 aa12.66□□□□□ -0.38
CPSF1-202ENST00000527827 FABP4P15090 132 aa12.66□□□□□ -0.38
CPSF1-202ENST00000527827 DHRS4-AS1Q9P1J3 65 aa12.66□□□□□ -0.38
CPSF1-202ENST00000527827 HSPB8Q9UJY1 196 aa12.66□□□□□ -0.38
CPSF1-202ENST00000527827 CD164Q04900 197 aa12.63□□□□□ -0.39
CPSF1-202ENST00000527827 OR13C6PQ8NH95 151 aa12.63□□□□□ -0.39
CPSF1-202ENST00000527827 LINC00308Q8TCZ7 52 aa12.63□□□□□ -0.39
CPSF1-202ENST00000527827 SPANXCQ9NY87 97 aa12.63□□□□□ -0.39
CPSF1-202ENST00000527827 E9PLD3 99 aa12.62□□□□□ -0.39
CPSF1-202ENST00000527827 LITAFQ99732 161 aa12.62□□□□□ -0.39
CPSF1-202ENST00000527827 Q1RN00 199 aa12.6□□□□□ -0.39
CPSF1-202ENST00000527827 ELOF1P60002 83 aaKnown RBP12.59□□□□□ -0.39
CPSF1-202ENST00000527827 PRO1933Q9H354 126 aa12.59□□□□□ -0.39
CPSF1-202ENST00000527827 H7C2G1 150 aa12.58□□□□□ -0.4
CPSF1-202ENST00000527827 SPANXDQ9BXN6 97 aa12.58□□□□□ -0.4
CPSF1-202ENST00000527827 COX7BP24311 80 aa12.57□□□□□ -0.4
CPSF1-202ENST00000527827 Q5XG85 94 aa12.57□□□□□ -0.4
CPSF1-202ENST00000527827 FLGP20930 4061 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-202ENST00000527827 M0R2T5 61 aa12.56□□□□□ -0.4
CPSF1-202ENST00000527827 TAL2Q16559 108 aa12.56□□□□□ -0.4
CPSF1-202ENST00000527827 C1orf195Q5TG92 126 aa12.56□□□□□ -0.4
CPSF1-202ENST00000527827 DEFB105AQ8NG35 78 aa12.56□□□□□ -0.4
CPSF1-202ENST00000527827 TIMM17BO60830 172 aa12.55□□□□□ -0.4
CPSF1-202ENST00000527827 RPL37P61927 97 aaKnown RBP12.55□□□□□ -0.4
CPSF1-202ENST00000527827 C6orf99Q4VX62 202 aa12.55□□□□□ -0.4
CPSF1-202ENST00000527827 TEX49A0A1B0GTD5 131 aa12.53□□□□□ -0.4
CPSF1-202ENST00000527827 SMIM29Q86T20 159 aa12.53□□□□□ -0.4
CPSF1-202ENST00000527827 A0A0G2JQZ4 141 aa12.5□□□□□ -0.41
CPSF1-202ENST00000527827 AKR1D1P51857 326 aa12.5□□□□□ -0.41
CPSF1-202ENST00000527827 COX6B2Q6YFQ2 88 aa12.5□□□□□ -0.41
CPSF1-202ENST00000527827 LINC00518Q8N0U6 118 aa12.48□□□□□ -0.41
CPSF1-202ENST00000527827 TRBV7-6A0A0J9YX20 115 aa12.45□□□□□ -0.42
CPSF1-202ENST00000527827 ZNF815PA8K554 130 aa12.45□□□□□ -0.42
CPSF1-202ENST00000527827 SYS1-DBNDD2H3BUS1 97 aa12.45□□□□□ -0.42
CPSF1-202ENST00000527827 TTTY13Q9BZ97 58 aa12.45□□□□□ -0.42
CPSF1-202ENST00000527827 IGLV5-48A0A075B6I7 105 aa12.44□□□□□ -0.42
CPSF1-202ENST00000527827 A0A1B0GWB2 263 aa12.4□□□□□ -0.42
CPSF1-202ENST00000527827 LINC01545Q5VT33 79 aa12.4□□□□□ -0.42
CPSF1-202ENST00000527827 COLCA2A8K830 154 aa12.39□□□□□ -0.43
CPSF1-202ENST00000527827 TCL1BO95988 128 aa12.34□□□□□ -0.43
CPSF1-202ENST00000527827 PET117Q6UWS5 81 aa12.33□□□□□ -0.44
CPSF1-202ENST00000527827 A6NDN8 102 aa12.31□□□□□ -0.44
CPSF1-202ENST00000527827 A4D1N5 150 aa12.28□□□□□ -0.44
CPSF1-202ENST00000527827 SCGB1D4Q6XE38 83 aa12.28□□□□□ -0.44
CPSF1-202ENST00000527827 HIST1H2BKO60814 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BJP06899 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 IFITM1P13164 125 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BOP23527 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BBP33778 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BDP58876 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BCP62807 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST2H2BEQ16778 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BHQ93079 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BNQ99877 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 HIST1H2BMQ99879 126 aa12.27□□□□□ -0.45
CPSF1-202ENST00000527827 COPS9Q8WXC6 57 aa12.26□□□□□ -0.45
CPSF1-202ENST00000527827 NHP2Q9NX24 153 aaKnown RBP12.26□□□□□ -0.45
CPSF1-202ENST00000527827 C3orf79P0CE67 100 aa12.25□□□□□ -0.45
CPSF1-202ENST00000527827 Q6Q795 121 aa12.24□□□□□ -0.45
CPSF1-202ENST00000527827 MUSTN1Q8IVN3 82 aa12.24□□□□□ -0.45
CPSF1-202ENST00000527827 SMIM11BQ8TCY0 68 aa12.24□□□□□ -0.45
CPSF1-202ENST00000527827 Q6ZVH6 145 aa12.22□□□□□ -0.45
CPSF1-202ENST00000527827 PCP2Q8IVA1 136 aa12.22□□□□□ -0.45
CPSF1-202ENST00000527827 F8WEM9 126 aa12.21□□□□□ -0.45
CPSF1-202ENST00000527827 ANKRD39Q53RE8 183 aa12.21□□□□□ -0.45
CPSF1-202ENST00000527827 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.2□□□□□ -0.46
CPSF1-202ENST00000527827 Q75L30 129 aa12.2□□□□□ -0.46
CPSF1-202ENST00000527827 ATP11AUNQ6ZP68 121 aa12.19□□□□□ -0.46
CPSF1-202ENST00000527827 OBSCN-AS1Q96MR7 158 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms