RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SPAG11AQ6PDA7 123 aa2.27□□□□□ -2.05
USP54-217ENST00000498213 SFTA2Q6UW10 78 aa2.27□□□□□ -2.05
USP54-217ENST00000498213 FA2HQ7L5A8 372 aa2.27□□□□□ -2.05
USP54-217ENST00000498213 FAM104AQ969W3 186 aa2.27□□□□□ -2.05
USP54-217ENST00000498213 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.26□□□□□ -2.05
USP54-217ENST00000498213 IGKV3OR2-268A0A0C4DH90 116 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 A0A1W2PNN7 141 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 IGKV2-29A2NJV5 120 aaPredicted RBP2.26□□□□□ -2.05
USP54-217ENST00000498213 TSTD3H0UI37 97 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 SYS1-DBNDD2H3BUS1 97 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 LEPROTL1O95214 131 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 TSPAN13O95857 204 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 HBDP02042 147 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 RPL39P62891 51 aaKnown RBP2.26□□□□□ -2.05
USP54-217ENST00000498213 RPL18AQ02543 176 aaKnown RBP2.26□□□□□ -2.05
USP54-217ENST00000498213 ATOH7Q8N100 152 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 PMCHL2Q9BQD1 86 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 C2orf88Q9BSF0 95 aa2.26□□□□□ -2.05
USP54-217ENST00000498213 NXT2Q9NPJ8 142 aaKnown RBP2.26□□□□□ -2.05
USP54-217ENST00000498213 GPR98Q8WXG9 6306 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 IGIPA6NJ69 53 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 KRTAP4-16G5E9R7 235 aaPredicted RBP2.25□□□□□ -2.05
USP54-217ENST00000498213 H0Y8G0 127 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 M0QXV9 152 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 BCE1O60756 84 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 RPS29P62273 56 aaKnown RBP2.25□□□□□ -2.05
USP54-217ENST00000498213 UBE2BP63146 152 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 LINC01545Q5VT33 79 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 C2orf66Q6UXQ4 117 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 Q6ZN92 141 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 TEX43Q6ZNM6 134 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 FAM19A3Q7Z5A8 133 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 Q8IZM0 81 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 ORAOV1Q8WV07 137 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 TOMM6Q96B49 74 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 IFI27L1Q96BM0 104 aa2.25□□□□□ -2.05
USP54-217ENST00000498213 MUC12Q9UKN1 5478 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 TRAV13-1A0A0B4J241 112 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 M0R2T5 61 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 CKS1BP61024 79 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 HERVK_113P63121 156 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 CXCL6P80162 114 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 ORMDL2Q53FV1 153 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 PHF5AQ7RTV0 110 aaKnown RBP2.24□□□□□ -2.05
USP54-217ENST00000498213 PRO1933Q9H354 126 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 GEMIN7Q9H840 131 aaKnown RBP2.24□□□□□ -2.05
USP54-217ENST00000498213 C6orf48Q9UBA6 75 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 HSPB8Q9UJY1 196 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 KMT2DO14686 5537 aa2.24□□□□□ -2.05
USP54-217ENST00000498213 IGKV2D-26A0A0A0MRZ7 120 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 HSBP1L1C9JCN9 74 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 F8VRH5 84 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 ATP5LO75964 103 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 HERV-K104P63124 156 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 KIAA0087Q14695 138 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 RNASE13Q5GAN3 156 aaKnown RBP2.23□□□□□ -2.05
USP54-217ENST00000498213 Q6ZUT4 128 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 MRPL55Q7Z7F7 128 aaKnown RBP2.23□□□□□ -2.05
USP54-217ENST00000498213 TMEM141Q96I45 108 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 SCGB3A1Q96QR1 104 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 TIMM17AQ99595 171 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 MAP1LC3CQ9BXW4 147 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 CYSLTR1Q9Y271 337 aa2.23□□□□□ -2.05
USP54-217ENST00000498213 TRAV12-1A0A0B4J245 112 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 C11orf86A6NJI1 115 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 LINC00587B1AMM8 73 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 COX17Q14061 63 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 SPATA45Q537H7 98 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 C6orf226Q5I0X4 101 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 C9orf129Q5T035 196 aaKnown RBP2.22□□□□□ -2.05
USP54-217ENST00000498213 ERASQ7Z444 233 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 C5orf38Q86SI9 138 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 LINC00304Q8N9R0 145 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 AMELXQ99217 191 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 RETNLBQ9BQ08 111 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 TTTY13Q9BZ97 58 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 NDUFA12Q9UI09 145 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 C22orf24Q9Y442 160 aa2.22□□□□□ -2.05
USP54-217ENST00000498213 ZNF706Q9Y5V0 76 aaPredicted RBP2.22□□□□□ -2.05
USP54-217ENST00000498213 C20orf202A1L168 122 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 SPINK1P00995 79 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 IGKCP01834 107 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 IGLC3P0DOY3 106 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 ZNF22P17026 224 aaPredicted RBP2.21□□□□□ -2.06
USP54-217ENST00000498213 TSPEAR-AS2P59090 65 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 PMVKQ15126 192 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 ASB16-AS1Q495Z4 193 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 UNQ6190/PRO20217Q6UXQ8 127 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 FAM19A5Q7Z5A7 132 aaPredicted RBP2.21□□□□□ -2.06
USP54-217ENST00000498213 KRTAP13-1Q8IUC0 172 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 PCP2Q8IVA1 136 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 C14orf144Q96I85 54 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 VAMP8Q9BV40 100 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 VCX2Q9H322 139 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 CST9LQ9H4G1 147 aa2.21□□□□□ -2.06
USP54-217ENST00000498213 CHTOPQ9Y3Y2 248 aaKnown RBP2.21□□□□□ -2.06
USP54-217ENST00000498213 DPM2O94777 84 aa2.2□□□□□ -2.06
USP54-217ENST00000498213 DDTP30046 118 aa2.2□□□□□ -2.06
USP54-217ENST00000498213 KRTAP19-2Q3LHN2 52 aa2.2□□□□□ -2.06
USP54-217ENST00000498213 C2orf91Q6ZV80 131 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms