RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 DPM2O94777 84 aa12.24□□□□□ -0.45
HDDC3-203ENST00000494993 TRGC2P03986 189 aa12.23□□□□□ -0.45
HDDC3-203ENST00000494993 PMCHL2Q9BQD1 86 aa12.23□□□□□ -0.45
HDDC3-203ENST00000494993 SOSTDC1Q6X4U4 206 aa12.22□□□□□ -0.45
HDDC3-203ENST00000494993 ZNF73O43830 326 aaPredicted RBP12.21□□□□□ -0.45
HDDC3-203ENST00000494993 IGKCP01834 107 aa12.21□□□□□ -0.45
HDDC3-203ENST00000494993 HSPB8Q9UJY1 196 aa12.21□□□□□ -0.45
HDDC3-203ENST00000494993 FABP4P15090 132 aa12.2□□□□□ -0.46
HDDC3-203ENST00000494993 NPC2P61916 151 aa12.2□□□□□ -0.46
HDDC3-203ENST00000494993 ST20-AS1Q8NBB2 130 aa12.2□□□□□ -0.46
HDDC3-203ENST00000494993 EIF4EBP3O60516 100 aaPredicted RBP12.19□□□□□ -0.46
HDDC3-203ENST00000494993 ADAMTSL4-AS1Q5T5F5 129 aa12.18□□□□□ -0.46
HDDC3-203ENST00000494993 A0A0J9YXY3 114 aa12.17□□□□□ -0.46
HDDC3-203ENST00000494993 C5orf52A6NGY3 159 aa12.17□□□□□ -0.46
HDDC3-203ENST00000494993 LCE2DQ5TA82 110 aaPredicted RBP12.16□□□□□ -0.46
HDDC3-203ENST00000494993 HINT1P49773 126 aaPredicted RBP12.14□□□□□ -0.47
HDDC3-203ENST00000494993 CBY1Q9Y3M2 126 aa12.14□□□□□ -0.47
HDDC3-203ENST00000494993 E9PLD3 99 aa12.12□□□□□ -0.47
HDDC3-203ENST00000494993 SPRR1BP22528 89 aa12.11□□□□□ -0.47
HDDC3-203ENST00000494993 LCE2CQ5TA81 110 aa12.09□□□□□ -0.47
HDDC3-203ENST00000494993 LIMD2Q9BT23 127 aa12.09□□□□□ -0.47
HDDC3-203ENST00000494993 SPANXCQ9NY87 97 aa12.09□□□□□ -0.47
HDDC3-203ENST00000494993 SLC25A34Q6PIV7 304 aa12.08□□□□□ -0.48
HDDC3-203ENST00000494993 LINC00308Q8TCZ7 52 aa12.08□□□□□ -0.48
HDDC3-203ENST00000494993 HRCT1Q6UXD1 115 aa12.07□□□□□ -0.48
HDDC3-203ENST00000494993 OR13C6PQ8NH95 151 aa12.07□□□□□ -0.48
HDDC3-203ENST00000494993 LITAFQ99732 161 aa12.07□□□□□ -0.48
HDDC3-203ENST00000494993 DHRS4-AS1Q9P1J3 65 aa12.07□□□□□ -0.48
HDDC3-203ENST00000494993 TIMM17BO60830 172 aa12.04□□□□□ -0.48
HDDC3-203ENST00000494993 KRTAP19-2Q3LHN2 52 aa12.04□□□□□ -0.48
HDDC3-203ENST00000494993 LAMTOR3Q9UHA4 124 aa12.04□□□□□ -0.48
HDDC3-203ENST00000494993 PCOTHQ58A44 107 aa12.03□□□□□ -0.48
HDDC3-203ENST00000494993 SPANXDQ9BXN6 97 aa12.02□□□□□ -0.49
HDDC3-203ENST00000494993 C9orf92A6NGG3 77 aa12.01□□□□□ -0.49
HDDC3-203ENST00000494993 FSIP2Q5CZC0 6907 aa12.01□□□□□ -0.49
HDDC3-203ENST00000494993 COLCA2A8K830 154 aa12□□□□□ -0.49
HDDC3-203ENST00000494993 SYS1-DBNDD2H3BUS1 97 aa12□□□□□ -0.49
HDDC3-203ENST00000494993 ELOF1P60002 83 aaKnown RBP12□□□□□ -0.49
HDDC3-203ENST00000494993 IGLV8-61A0A075B6I0 122 aa11.99□□□□□ -0.49
HDDC3-203ENST00000494993 COX7BP24311 80 aa11.99□□□□□ -0.49
HDDC3-203ENST00000494993 C6orf99Q4VX62 202 aa11.97□□□□□ -0.49
HDDC3-203ENST00000494993 CRCT1Q9UGL9 99 aa11.97□□□□□ -0.49
HDDC3-203ENST00000494993 ZNF815PA8K554 130 aa11.96□□□□□ -0.49
HDDC3-203ENST00000494993 MT1HP80294 61 aa11.96□□□□□ -0.49
HDDC3-203ENST00000494993 CD164Q04900 197 aa11.96□□□□□ -0.49
HDDC3-203ENST00000494993 TAL2Q16559 108 aa11.96□□□□□ -0.49
HDDC3-203ENST00000494993 Q1RN00 199 aa11.96□□□□□ -0.49
HDDC3-203ENST00000494993 LINC00518Q8N0U6 118 aa11.96□□□□□ -0.49
HDDC3-203ENST00000494993 LINC01545Q5VT33 79 aa11.95□□□□□ -0.5
HDDC3-203ENST00000494993 DEFB105AQ8NG35 78 aa11.94□□□□□ -0.5
HDDC3-203ENST00000494993 TTTY13Q9BZ97 58 aa11.94□□□□□ -0.5
HDDC3-203ENST00000494993 PRO1933Q9H354 126 aa11.94□□□□□ -0.5
HDDC3-203ENST00000494993 TEX49A0A1B0GTD5 131 aa11.92□□□□□ -0.5
HDDC3-203ENST00000494993 H7C2G1 150 aa11.91□□□□□ -0.5
HDDC3-203ENST00000494993 PET117Q6UWS5 81 aa11.91□□□□□ -0.5
HDDC3-203ENST00000494993 CFC1BP0CG36 223 aa11.9□□□□□ -0.5
HDDC3-203ENST00000494993 TRBV7-6A0A0J9YX20 115 aa11.89□□□□□ -0.51
HDDC3-203ENST00000494993 Q5XG85 94 aa11.89□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BKO60814 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BJP06899 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BOP23527 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BBP33778 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BDP58876 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BCP62807 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST2H2BEQ16778 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.88□□□□□ -0.51
HDDC3-203ENST00000494993 SMIM29Q86T20 159 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BHQ93079 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BNQ99877 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 HIST1H2BMQ99879 126 aa11.88□□□□□ -0.51
HDDC3-203ENST00000494993 AKR1D1P51857 326 aa11.87□□□□□ -0.51
HDDC3-203ENST00000494993 C1orf195Q5TG92 126 aa11.86□□□□□ -0.51
HDDC3-203ENST00000494993 SLC7A5P1Q8MH63 180 aa11.86□□□□□ -0.51
HDDC3-203ENST00000494993 A0A1B0GWB2 263 aa11.85□□□□□ -0.51
HDDC3-203ENST00000494993 IGLV5-48A0A075B6I7 105 aa11.84□□□□□ -0.51
HDDC3-203ENST00000494993 A0A0G2JQZ4 141 aa11.82□□□□□ -0.52
HDDC3-203ENST00000494993 C3orf79P0CE67 100 aa11.82□□□□□ -0.52
HDDC3-203ENST00000494993 SCGB1D4Q6XE38 83 aa11.82□□□□□ -0.52
HDDC3-203ENST00000494993 COPS9Q8WXC6 57 aa11.81□□□□□ -0.52
HDDC3-203ENST00000494993 IFITM1P13164 125 aa11.8□□□□□ -0.52
HDDC3-203ENST00000494993 LORP23490 312 aaPredicted RBP11.8□□□□□ -0.52
HDDC3-203ENST00000494993 RPL37P61927 97 aaKnown RBP11.8□□□□□ -0.52
HDDC3-203ENST00000494993 A6NDN8 102 aa11.79□□□□□ -0.52
HDDC3-203ENST00000494993 KRTAP10-6P60371 365 aaPredicted RBP11.79□□□□□ -0.52
HDDC3-203ENST00000494993 A4D1N5 150 aa11.76□□□□□ -0.53
HDDC3-203ENST00000494993 KRTDAPP60985 99 aa11.76□□□□□ -0.53
HDDC3-203ENST00000494993 Q6ZVH6 145 aa11.76□□□□□ -0.53
HDDC3-203ENST00000494993 ANKRD39Q53RE8 183 aa11.75□□□□□ -0.53
HDDC3-203ENST00000494993 FLGP20930 4061 aaPredicted RBP11.74□□□□□ -0.53
HDDC3-203ENST00000494993 MUSTN1Q8IVN3 82 aa11.74□□□□□ -0.53
HDDC3-203ENST00000494993 NHP2Q9NX24 153 aaKnown RBP11.74□□□□□ -0.53
HDDC3-203ENST00000494993 M0R2T5 61 aa11.72□□□□□ -0.53
HDDC3-203ENST00000494993 TCL1BO95988 128 aa11.72□□□□□ -0.53
HDDC3-203ENST00000494993 SMIM11BQ8TCY0 68 aa11.71□□□□□ -0.53
HDDC3-203ENST00000494993 TRAV13-2A0A0B4J235 113 aa11.7□□□□□ -0.54
HDDC3-203ENST00000494993 C20orf202A1L168 122 aa11.7□□□□□ -0.54
HDDC3-203ENST00000494993 COA6Q5JTJ3 125 aaKnown RBP11.7□□□□□ -0.54
HDDC3-203ENST00000494993 COX6B2Q6YFQ2 88 aa11.7□□□□□ -0.54
HDDC3-203ENST00000494993 PCP2Q8IVA1 136 aa11.68□□□□□ -0.54
HDDC3-203ENST00000494993 ATOH7Q8N100 152 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms